Miyakogusa Predicted Gene

Lj1g3v2157640.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2157640.1 tr|G7KA43|G7KA43_MEDTR F-box protein SKIP19
OS=Medicago truncatula GN=MTR_5g062080 PE=4
SV=1,64.06,8e-17,F-box,F-box domain, cyclin-like; F-box domain,F-box
domain, cyclin-like; no description,NULL,CUFF.28656.1
         (82 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G05460.1 | Symbols:  | RNI-like superfamily protein | chr4:27...    67   3e-12
AT4G05497.1 | Symbols:  | RNI-like superfamily protein | chr4:27...    62   1e-10
AT4G05475.1 | Symbols:  | RNI-like superfamily protein | chr4:27...    58   1e-09
AT4G05470.1 | Symbols:  | RNI-like superfamily protein | chr4:27...    57   3e-09
AT4G05490.1 | Symbols:  | RNI-like superfamily protein | chr4:27...    48   1e-06
AT4G11580.1 | Symbols:  | RNI-like superfamily protein | chr4:70...    46   6e-06

>AT4G05460.1 | Symbols:  | RNI-like superfamily protein |
          chr4:2761106-2762400 REVERSE LENGTH=302
          Length = 302

 Score = 66.6 bits (161), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/51 (54%), Positives = 36/51 (70%)

Query: 16 NWLELPRDVTTNILLRLGVVEIVMSASQVCSLWWNICKDPLMWHIIDMTNL 66
          NW ELP ++T+ IL RLG +EI+ +A +VC  W  +CKDP MW  IDM NL
Sbjct: 18 NWTELPPELTSAILHRLGAIEILENAQKVCRSWRRVCKDPSMWRKIDMHNL 68


>AT4G05497.1 | Symbols:  | RNI-like superfamily protein |
          chr4:2777903-2778801 REVERSE LENGTH=246
          Length = 246

 Score = 61.6 bits (148), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 26/53 (49%), Positives = 37/53 (69%)

Query: 11 NTNGPNWLELPRDVTTNILLRLGVVEIVMSASQVCSLWWNICKDPLMWHIIDM 63
          N    NW ELP ++T++ILLRLG +EI+ +A +VC  W  +C+DP MW  ID+
Sbjct: 15 NGEYRNWAELPPELTSSILLRLGAIEILQNAQRVCKSWRRVCQDPSMWRKIDI 67


>AT4G05475.1 | Symbols:  | RNI-like superfamily protein |
          chr4:2765962-2767957 REVERSE LENGTH=309
          Length = 309

 Score = 57.8 bits (138), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 25/52 (48%), Positives = 38/52 (73%)

Query: 16 NWLELPRDVTTNILLRLGVVEIVMSASQVCSLWWNICKDPLMWHIIDMTNLL 67
          NW++LP ++TT+ILLRL V +I+ +A ++C  W  ICKDP MW  I++ + L
Sbjct: 39 NWVDLPPELTTSILLRLSVTDILDNARKLCRAWRRICKDPSMWRKINLRDCL 90


>AT4G05470.1 | Symbols:  | RNI-like superfamily protein |
          chr4:2763256-2765351 REVERSE LENGTH=304
          Length = 304

 Score = 56.6 bits (135), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 25/52 (48%), Positives = 37/52 (71%)

Query: 16 NWLELPRDVTTNILLRLGVVEIVMSASQVCSLWWNICKDPLMWHIIDMTNLL 67
          NW++LP ++TT+ILLRL + +I+ +A +VC  W  ICKDP MW  I+  + L
Sbjct: 45 NWVDLPPELTTSILLRLSLTDILDNAQKVCKEWRRICKDPSMWRKINTRDCL 96


>AT4G05490.1 | Symbols:  | RNI-like superfamily protein |
          chr4:2771044-2772252 REVERSE LENGTH=307
          Length = 307

 Score = 48.1 bits (113), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/51 (52%), Positives = 36/51 (70%)

Query: 16 NWLELPRDVTTNILLRLGVVEIVMSASQVCSLWWNICKDPLMWHIIDMTNL 66
          NW ELP D+ ++ILLRL  +EI+ +A +VC  W  + KDPL+W  IDM NL
Sbjct: 26 NWAELPPDLLSSILLRLSPLEILENARKVCRSWRRVSKDPLIWRRIDMRNL 76


>AT4G11580.1 | Symbols:  | RNI-like superfamily protein |
          chr4:7006648-7007738 REVERSE LENGTH=333
          Length = 333

 Score = 45.8 bits (107), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 36/64 (56%)

Query: 6  EVEGVNTNGPNWLELPRDVTTNILLRLGVVEIVMSASQVCSLWWNICKDPLMWHIIDMTN 65
          +VE  +     W +L +D+   I  +L V++I M AS+VC  W+    +  +W+ +D+TN
Sbjct: 3  KVESTSGEVSEWADLNKDILELIFNKLDVMDITMGASRVCISWFLASHNKTLWNTVDLTN 62

Query: 66 LLPL 69
          L  L
Sbjct: 63 LQEL 66