Miyakogusa Predicted Gene

Lj1g3v2141080.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2141080.1 tr|D0TZ45|D0TZ45_STYJA MADS-domain transcription
factor (Fragment) OS=Styrax japonicus GN=TM6 PE=3
S,45.71,2e-19,coiled-coil,NULL; K-box,Transcription factor, K-box;
AGL97, DNA BINDING / TRANSCRIPTION FACTOR,NULL;,CUFF.28630.1
         (112 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G54340.1 | Symbols: AP3, ATAP3 | K-box region and MADS-box tr...    97   3e-21

>AT3G54340.1 | Symbols: AP3, ATAP3 | K-box region and MADS-box
           transcription factor family protein  |
           chr3:20119428-20121087 REVERSE LENGTH=232
          Length = 232

 Score = 96.7 bits (239), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 50/115 (43%), Positives = 75/115 (65%), Gaps = 5/115 (4%)

Query: 1   MDELRLLEQEMDNAAKAVRERKYKVITNQIDTQRKKFNNEREVHNRLLRDLDARAENPPY 60
           + ELR LE EM+N  K VRERK+K + NQI+T +KK  +++++   L+ +L+ RAE+P Y
Sbjct: 118 IQELRRLEDEMENTFKLVRERKFKSLGNQIETTKKKNKSQQDIQKNLIHELELRAEDPHY 177

Query: 61  ELMDNGGEYESVIGFSNLGPRMFALSLQPSH----PNAHNSGGGAGSDLTTYPLL 111
            L+DNGG+Y+SV+G+   G R +AL    +H    PN H     + SD+ T+ LL
Sbjct: 178 GLVDNGGDYDSVLGYQIEGSRAYALRFHQNHHHYYPN-HGLHAPSASDIITFHLL 231