Miyakogusa Predicted Gene

Lj1g3v2139540.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2139540.1 tr|D7MEZ7|D7MEZ7_ARALL Predicted protein
(Fragment) OS=Arabidopsis lyrata subsp. lyrata
GN=ARALYDRAF,67.21,1e-16,seg,NULL; RING FINGER PROTEIN 127,NULL; PUA
domain-like,PUA-like domain; LON,Peptidase S16, lon N-te,CUFF.28885.1
         (124 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G75460.1 | Symbols:  | ATP-dependent protease La (LON) domain...    77   2e-15
AT1G19740.1 | Symbols:  | ATP-dependent protease La (LON) domain...    71   1e-13

>AT1G75460.1 | Symbols:  | ATP-dependent protease La (LON) domain
           protein | chr1:28327986-28328822 FORWARD LENGTH=278
          Length = 278

 Score = 77.4 bits (189), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 37/60 (61%), Positives = 41/60 (68%), Gaps = 1/60 (1%)

Query: 64  EKHH-TDSPRSDDXXXXXXXXXXXXXXXGAILPLQIFEFRYRIMMHTLLHTDLRFGVIYT 122
           EKHH   SP+SDD               GAILPLQIFEFRYRIMMHTLL +DLRFGV+Y+
Sbjct: 56  EKHHNAKSPKSDDIVELPLFPLPLVLFPGAILPLQIFEFRYRIMMHTLLQSDLRFGVVYS 115


>AT1G19740.1 | Symbols:  | ATP-dependent protease La (LON) domain
           protein | chr1:6824396-6825232 FORWARD LENGTH=278
          Length = 278

 Score = 71.2 bits (173), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 33/63 (52%), Positives = 41/63 (65%), Gaps = 2/63 (3%)

Query: 64  EKHHTDS--PRSDDXXXXXXXXXXXXXXXGAILPLQIFEFRYRIMMHTLLHTDLRFGVIY 121
           EKHH ++  P+SDD               GA +PLQIFEFRYR+MM TLL +DLRFGV+Y
Sbjct: 55  EKHHNNANPPKSDDLVELPLFPLPLVLFPGATIPLQIFEFRYRVMMQTLLQSDLRFGVVY 114

Query: 122 TAA 124
           + A
Sbjct: 115 SDA 117