Miyakogusa Predicted Gene

Lj1g3v2138380.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2138380.1 Non Chatacterized Hit- tr|C5WWN8|C5WWN8_SORBI
Putative uncharacterized protein Sb01g032790 OS=Sorghu,57.47,3e-19,PUA
domain-like,PUA-like domain; seg,NULL; SUBFAMILY NOT NAMED,NULL; RING
FINGER PROTEIN 127,NULL; L,CUFF.28880.1
         (152 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G75460.1 | Symbols:  | ATP-dependent protease La (LON) domain...   130   4e-31
AT1G19740.1 | Symbols:  | ATP-dependent protease La (LON) domain...   122   8e-29

>AT1G75460.1 | Symbols:  | ATP-dependent protease La (LON) domain
           protein | chr1:28327986-28328822 FORWARD LENGTH=278
          Length = 278

 Score =  130 bits (327), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 62/91 (68%), Positives = 71/91 (78%), Gaps = 2/91 (2%)

Query: 64  EKHH-TDSPRSDDXXXXXXXXXXXXXXXGAILPLQIFEFRYRIMMHTLLHTDLRFGVIYT 122
           EKHH   SP+SDD               GAILPLQIFEFRYRIMMHTLL +DLRFGV+Y+
Sbjct: 56  EKHHNAKSPKSDDIVELPLFPLPLVLFPGAILPLQIFEFRYRIMMHTLLQSDLRFGVVYS 115

Query: 123 DAVTGT-AEVGCVGEVIKHERLVDDRFFLIC 152
           D+V+G+ AEVGCVGEV+KHERLVDDRFFL+C
Sbjct: 116 DSVSGSAAEVGCVGEVVKHERLVDDRFFLVC 146


>AT1G19740.1 | Symbols:  | ATP-dependent protease La (LON) domain
           protein | chr1:6824396-6825232 FORWARD LENGTH=278
          Length = 278

 Score =  122 bits (307), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 56/92 (60%), Positives = 69/92 (75%), Gaps = 3/92 (3%)

Query: 64  EKHHTDS--PRSDDXXXXXXXXXXXXXXXGAILPLQIFEFRYRIMMHTLLHTDLRFGVIY 121
           EKHH ++  P+SDD               GA +PLQIFEFRYR+MM TLL +DLRFGV+Y
Sbjct: 55  EKHHNNANPPKSDDLVELPLFPLPLVLFPGATIPLQIFEFRYRVMMQTLLQSDLRFGVVY 114

Query: 122 TDAVTGTAE-VGCVGEVIKHERLVDDRFFLIC 152
           +DAV+G+A  +GCVGE++KHERLVDDRFFLIC
Sbjct: 115 SDAVSGSAAGIGCVGEIVKHERLVDDRFFLIC 146