Miyakogusa Predicted Gene

Lj1g3v2128340.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2128340.2 Non Chatacterized Hit- tr|I1JT85|I1JT85_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.9231 PE=,91.72,0,Second
domain of Mu2 adaptin subunit (ap50) of ap2 adaptor,Clathrin adaptor,
mu subunit, C-terminal;,CUFF.28587.2
         (302 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G24550.2 | Symbols:  | Clathrin adaptor complexes medium subu...   494   e-140
AT4G24550.3 | Symbols:  | Clathrin adaptor complexes medium subu...   401   e-112
AT4G24550.1 | Symbols:  | Clathrin adaptor complexes medium subu...   397   e-111
AT5G46630.2 | Symbols:  | Clathrin adaptor complexes medium subu...   170   1e-42
AT5G46630.1 | Symbols:  | Clathrin adaptor complexes medium subu...   170   1e-42
AT1G10730.1 | Symbols:  | Clathrin adaptor complexes medium subu...   166   2e-41
AT1G60780.1 | Symbols: HAP13 | Clathrin adaptor complexes medium...   166   2e-41
AT1G56590.1 | Symbols: ZIP4 | Clathrin adaptor complexes medium ...    86   3e-17

>AT4G24550.2 | Symbols:  | Clathrin adaptor complexes medium subunit
           family protein | chr4:12675873-12678903 FORWARD
           LENGTH=451
          Length = 451

 Score =  494 bits (1271), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 239/309 (77%), Positives = 264/309 (85%), Gaps = 7/309 (2%)

Query: 1   MIDFGYVQTTSTELLKSYVFNEPIMIDAARLPPMGPASIFMQGTKRMPGTAITKSVFANE 60
           +IDFGYVQTTSTE+LKSY+FNEPI++  ARL P+ PA+IF QG KRMPGTA+TKSV AN+
Sbjct: 119 VIDFGYVQTTSTEVLKSYIFNEPIVVSPARLQPIDPAAIFTQGAKRMPGTAVTKSVVAND 178

Query: 61  SGGKKREEIFVDVIEKISVTFNSSGFILTSEIDGTIQMKSYLTGNPEIRLALNEDLSIGT 120
            GG++REEIFVD+IEKISVTF+SSG+ILTSEIDGTIQMKSYL+GNPEIRLALNEDL+IG 
Sbjct: 179 PGGRRREEIFVDIIEKISVTFSSSGYILTSEIDGTIQMKSYLSGNPEIRLALNEDLNIGR 238

Query: 121 S-----DYRGSGA--VILDDCNFHESVHLDSFDVDRTLSLVPPDGEFPVMNYRMTQPFKP 173
                 DYR S    VILDDCNFHESV LDSFD DRTLSLVPPDGEFPVMNYRMTQ FKP
Sbjct: 239 GGRSVYDYRSSSGSGVILDDCNFHESVRLDSFDSDRTLSLVPPDGEFPVMNYRMTQEFKP 298

Query: 174 PFRINALIEETGPLKAEVTIKIRAEFNSSINANTVLVQMPLPTSTARVNFELEPGAVGHT 233
           PF +N LIEE G LKAEV IKIRAEF S I ANT+ VQMPLP  T+R +FELEPGA G  
Sbjct: 299 PFHVNTLIEEAGRLKAEVIIKIRAEFPSDIIANTITVQMPLPNYTSRASFELEPGAAGQR 358

Query: 234 TDFKETNKRLEWGIKKVVGGSEHTLRAKLTLSHEFHGNIMKEAGPLSMTFTIPMYNASRL 293
           TDFKE+NK LEW +KK+VGG EHTLRAKLT S EFHGNI KEAGP+SMTFTIPMYN S+L
Sbjct: 359 TDFKESNKMLEWNLKKIVGGGEHTLRAKLTFSQEFHGNITKEAGPVSMTFTIPMYNVSKL 418

Query: 294 QVKYLQIAK 302
           QVKYLQIAK
Sbjct: 419 QVKYLQIAK 427


>AT4G24550.3 | Symbols:  | Clathrin adaptor complexes medium subunit
           family protein | chr4:12675873-12678689 FORWARD
           LENGTH=385
          Length = 385

 Score =  401 bits (1030), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 195/258 (75%), Positives = 218/258 (84%), Gaps = 7/258 (2%)

Query: 1   MIDFGYVQTTSTELLKSYVFNEPIMIDAARLPPMGPASIFMQGTKRMPGTAITKSVFANE 60
           +IDFGYVQTTSTE+LKSY+FNEPI++  ARL P+ PA+IF QG KRMPGTA+TKSV AN+
Sbjct: 119 VIDFGYVQTTSTEVLKSYIFNEPIVVSPARLQPIDPAAIFTQGAKRMPGTAVTKSVVAND 178

Query: 61  SGGKKREEIFVDVIEKISVTFNSSGFILTSEIDGTIQMKSYLTGNPEIRLALNEDLSIGT 120
            GG++REEIFVD+IEKISVTF+SSG+ILTSEIDGTIQMKSYL+GNPEIRLALNEDL+IG 
Sbjct: 179 PGGRRREEIFVDIIEKISVTFSSSGYILTSEIDGTIQMKSYLSGNPEIRLALNEDLNIGR 238

Query: 121 S-----DYRGSGA--VILDDCNFHESVHLDSFDVDRTLSLVPPDGEFPVMNYRMTQPFKP 173
                 DYR S    VILDDCNFHESV LDSFD DRTLSLVPPDGEFPVMNYRMTQ FKP
Sbjct: 239 GGRSVYDYRSSSGSGVILDDCNFHESVRLDSFDSDRTLSLVPPDGEFPVMNYRMTQEFKP 298

Query: 174 PFRINALIEETGPLKAEVTIKIRAEFNSSINANTVLVQMPLPTSTARVNFELEPGAVGHT 233
           PF +N LIEE G LKAEV IKIRAEF S I ANT+ VQMPLP  T+R +FELEPGA G  
Sbjct: 299 PFHVNTLIEEAGRLKAEVIIKIRAEFPSDIIANTITVQMPLPNYTSRASFELEPGAAGQR 358

Query: 234 TDFKETNKRLEWGIKKVV 251
           TDFKE+NK LEW +KKV+
Sbjct: 359 TDFKESNKMLEWNLKKVI 376


>AT4G24550.1 | Symbols:  | Clathrin adaptor complexes medium subunit
           family protein | chr4:12675873-12678526 FORWARD
           LENGTH=380
          Length = 380

 Score =  397 bits (1021), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 194/256 (75%), Positives = 216/256 (84%), Gaps = 7/256 (2%)

Query: 1   MIDFGYVQTTSTELLKSYVFNEPIMIDAARLPPMGPASIFMQGTKRMPGTAITKSVFANE 60
           +IDFGYVQTTSTE+LKSY+FNEPI++  ARL P+ PA+IF QG KRMPGTA+TKSV AN+
Sbjct: 119 VIDFGYVQTTSTEVLKSYIFNEPIVVSPARLQPIDPAAIFTQGAKRMPGTAVTKSVVAND 178

Query: 61  SGGKKREEIFVDVIEKISVTFNSSGFILTSEIDGTIQMKSYLTGNPEIRLALNEDLSIGT 120
            GG++REEIFVD+IEKISVTF+SSG+ILTSEIDGTIQMKSYL+GNPEIRLALNEDL+IG 
Sbjct: 179 PGGRRREEIFVDIIEKISVTFSSSGYILTSEIDGTIQMKSYLSGNPEIRLALNEDLNIGR 238

Query: 121 S-----DYRGS--GAVILDDCNFHESVHLDSFDVDRTLSLVPPDGEFPVMNYRMTQPFKP 173
                 DYR S    VILDDCNFHESV LDSFD DRTLSLVPPDGEFPVMNYRMTQ FKP
Sbjct: 239 GGRSVYDYRSSSGSGVILDDCNFHESVRLDSFDSDRTLSLVPPDGEFPVMNYRMTQEFKP 298

Query: 174 PFRINALIEETGPLKAEVTIKIRAEFNSSINANTVLVQMPLPTSTARVNFELEPGAVGHT 233
           PF +N LIEE G LKAEV IKIRAEF S I ANT+ VQMPLP  T+R +FELEPGA G  
Sbjct: 299 PFHVNTLIEEAGRLKAEVIIKIRAEFPSDIIANTITVQMPLPNYTSRASFELEPGAAGQR 358

Query: 234 TDFKETNKRLEWGIKK 249
           TDFKE+NK LEW +KK
Sbjct: 359 TDFKESNKMLEWNLKK 374


>AT5G46630.2 | Symbols:  | Clathrin adaptor complexes medium subunit
           family protein | chr5:18920580-18923060 FORWARD
           LENGTH=441
          Length = 441

 Score =  170 bits (430), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 98/306 (32%), Positives = 166/306 (54%), Gaps = 17/306 (5%)

Query: 1   MIDFGYVQTTSTELLKSYVFNEPIMIDAARLPPMGPASIFMQGTKRMPGTAITKSVFANE 60
           ++DFGY Q  S E+LK Y+  E +    +  P   P       T ++ G       +  E
Sbjct: 119 IMDFGYPQNLSPEILKLYITQEGVRSPFSSKPKDKPVP---NATLQVTGAV----GWRRE 171

Query: 61  SGGKKREEIFVDVIEKISVTFNSSGFILTSEIDGTIQMKSYLTGNPEIRLALNEDLSIGT 120
               K+ E+F+D++E +++  +S G +L  ++ G + MK +L+G P+++L LN+ + +  
Sbjct: 172 GLAYKKNEVFLDIVESVNLLMSSKGNVLRCDVTGKVLMKCFLSGMPDLKLGLNDKIGLEK 231

Query: 121 -----SDYRGSGAVI-LDDCNFHESVHLDSFDVDRTLSLVPPDGEFPVMNYRMTQPFKPP 174
                S    SG  I LDD  FH+ V+L  F+ ++T+S VPPDGEF +M YR+T+    P
Sbjct: 232 ESEMKSRPAKSGKTIELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYRITEGVNLP 291

Query: 175 FRINALIEETGPLKAEVTIKIRAEFNSSINANTVLVQMPLPTSTARVNFELEPGAVGHTT 234
           FR+   I+E G  + EV +K+++ F + + A  V+V++P+P  TA+ NF++  G   +  
Sbjct: 292 FRVLPTIKELGRTRMEVNVKVKSVFGAKMFALGVVVKIPVPKQTAKTNFQVTTGRAKYNP 351

Query: 235 DFKETNKRLEWGIKKVVGGSEHTLRAKLTLSHEFHGNIMKEAGPLSMTFTIPMYNASRLQ 294
                   L W I+K  G +E TL A++ L             P+ M F +PM+ AS L+
Sbjct: 352 SI----DCLVWKIRKFPGQTESTLSAEIELISTMGEKKSWTRPPIQMEFQVPMFTASGLR 407

Query: 295 VKYLQI 300
           V++L++
Sbjct: 408 VRFLKV 413


>AT5G46630.1 | Symbols:  | Clathrin adaptor complexes medium subunit
           family protein | chr5:18920580-18923252 FORWARD
           LENGTH=438
          Length = 438

 Score =  170 bits (430), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 98/306 (32%), Positives = 166/306 (54%), Gaps = 17/306 (5%)

Query: 1   MIDFGYVQTTSTELLKSYVFNEPIMIDAARLPPMGPASIFMQGTKRMPGTAITKSVFANE 60
           ++DFGY Q  S E+LK Y+  E +    +  P   P       T ++ G       +  E
Sbjct: 119 IMDFGYPQNLSPEILKLYITQEGVRSPFSSKPKDKPVP---NATLQVTGAV----GWRRE 171

Query: 61  SGGKKREEIFVDVIEKISVTFNSSGFILTSEIDGTIQMKSYLTGNPEIRLALNEDLSIGT 120
               K+ E+F+D++E +++  +S G +L  ++ G + MK +L+G P+++L LN+ + +  
Sbjct: 172 GLAYKKNEVFLDIVESVNLLMSSKGNVLRCDVTGKVLMKCFLSGMPDLKLGLNDKIGLEK 231

Query: 121 -----SDYRGSGAVI-LDDCNFHESVHLDSFDVDRTLSLVPPDGEFPVMNYRMTQPFKPP 174
                S    SG  I LDD  FH+ V+L  F+ ++T+S VPPDGEF +M YR+T+    P
Sbjct: 232 ESEMKSRPAKSGKTIELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYRITEGVNLP 291

Query: 175 FRINALIEETGPLKAEVTIKIRAEFNSSINANTVLVQMPLPTSTARVNFELEPGAVGHTT 234
           FR+   I+E G  + EV +K+++ F + + A  V+V++P+P  TA+ NF++  G   +  
Sbjct: 292 FRVLPTIKELGRTRMEVNVKVKSVFGAKMFALGVVVKIPVPKQTAKTNFQVTTGRAKYNP 351

Query: 235 DFKETNKRLEWGIKKVVGGSEHTLRAKLTLSHEFHGNIMKEAGPLSMTFTIPMYNASRLQ 294
                   L W I+K  G +E TL A++ L             P+ M F +PM+ AS L+
Sbjct: 352 SI----DCLVWKIRKFPGQTESTLSAEIELISTMGEKKSWTRPPIQMEFQVPMFTASGLR 407

Query: 295 VKYLQI 300
           V++L++
Sbjct: 408 VRFLKV 413


>AT1G10730.1 | Symbols:  | Clathrin adaptor complexes medium subunit
           family protein | chr1:3565463-3567779 FORWARD LENGTH=428
          Length = 428

 Score =  166 bits (421), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 96/303 (31%), Positives = 157/303 (51%), Gaps = 23/303 (7%)

Query: 1   MIDFGYVQTTSTELLKSYVFNEPIMIDAARLPPMGPASIFMQGTKRMPGTAITKSVFANE 60
           M+DFGY Q T   +L  ++  +   ++  + PPM                A+T SV    
Sbjct: 120 MMDFGYPQFTEARILSEFIKTDAYRMEVTQRPPM----------------AVTNSVSWRS 163

Query: 61  SGGK-KREEIFVDVIEKISVTFNSSGFILTSEIDGTIQMKSYLTGNPEIRLALNEDLSIG 119
            G K K+ E+F+DVIE +++  NS+G I+ S++ G ++M++YL+G PE +L LN+ + + 
Sbjct: 164 EGLKFKKNEVFLDVIESVNILVNSNGQIVRSDVVGALKMRTYLSGMPECKLGLNDRILLE 223

Query: 120 TSDYRGSG-AVILDDCNFHESVHLDSFDVDRTLSLVPPDGEFPVMNYRMTQPFKPPFRIN 178
                  G A+ L+D  FH+ V L  F+ DRT+S +PPDG F +M YR++   KP   + 
Sbjct: 224 AQGRAIKGKAIDLEDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLSTQVKPLIWVE 283

Query: 179 ALIEETGPLKAEVTIKIRAEFNSSINANTVLVQMPLPTSTARVNFELEPGAVGHTTDFKE 238
           A IE     + E+ +K R++F     A +V +++P+PT     +     G+  +  +   
Sbjct: 284 AHIERHSRSRVEMLVKARSQFKDRSYATSVEIELPVPTDAYNPDVRTSLGSAAYAPE--- 340

Query: 239 TNKRLEWGIKKVVGGSEHTLRAKLTL-SHEFHGNIMKEAGPLSMTFTIPMYNASRLQVKY 297
               L W I+   G  EHTL+A   L S        +   P+ + F IP +  S +QV+Y
Sbjct: 341 -KDALVWKIQYFYGNKEHTLKADFHLPSIAAEEATPERKAPIRVKFEIPKFIVSGIQVRY 399

Query: 298 LQI 300
           L+I
Sbjct: 400 LKI 402


>AT1G60780.1 | Symbols: HAP13 | Clathrin adaptor complexes medium
           subunit family protein | chr1:22369289-22371885 REVERSE
           LENGTH=428
          Length = 428

 Score =  166 bits (420), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 96/303 (31%), Positives = 157/303 (51%), Gaps = 23/303 (7%)

Query: 1   MIDFGYVQTTSTELLKSYVFNEPIMIDAARLPPMGPASIFMQGTKRMPGTAITKSV-FAN 59
           M+DFGY Q T   +L  ++  +   ++  + PPM                A+T +V + +
Sbjct: 120 MMDFGYPQYTEARILSEFIKTDAYRMEVTQRPPM----------------AVTNAVSWRS 163

Query: 60  ESGGKKREEIFVDVIEKISVTFNSSGFILTSEIDGTIQMKSYLTGNPEIRLALNEDLSIG 119
           E    K+ E+F+DVIE +++  NS+G I+ S++ G ++M++YLTG PE +L LN+ + + 
Sbjct: 164 EGIQYKKNEVFLDVIENVNILVNSNGQIVRSDVVGALKMRTYLTGMPECKLGLNDRVLLE 223

Query: 120 TSDYRGSG-AVILDDCNFHESVHLDSFDVDRTLSLVPPDGEFPVMNYRMTQPFKPPFRIN 178
                  G A+ L+D  FH+ V L  F+ DRT+S +PPDG F +M YR++   KP   + 
Sbjct: 224 AQGRATKGKAIDLEDIKFHQCVRLARFENDRTISFIPPDGAFDLMTYRLSTQVKPLIWVE 283

Query: 179 ALIEETGPLKAEVTIKIRAEFNSSINANTVLVQMPLPTSTARVNFELEPGAVGHTTDFKE 238
           A IE     + E+ IK R++F     A  V +++P+PT  +        G+  +  +   
Sbjct: 284 AQIESHSRSRVEMLIKARSQFKERSTATNVEIELPVPTDASNPTVRTSLGSASYAPE--- 340

Query: 239 TNKRLEWGIKKVVGGSEHTLRAKLTL-SHEFHGNIMKEAGPLSMTFTIPMYNASRLQVKY 297
               L W IK   G  E+ LRA+  L S        +   P+ + F IP +  S +QV+Y
Sbjct: 341 -KDALVWKIKSFPGNKEYMLRAEFHLPSITAEEATPERKAPIRVKFEIPYFTVSGIQVRY 399

Query: 298 LQI 300
           L+I
Sbjct: 400 LKI 402


>AT1G56590.1 | Symbols: ZIP4 | Clathrin adaptor complexes medium
           subunit family protein | chr1:21202250-21204697 REVERSE
           LENGTH=415
          Length = 415

 Score = 85.9 bits (211), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 70/265 (26%), Positives = 117/265 (44%), Gaps = 25/265 (9%)

Query: 1   MIDFGYVQTTSTELLKSYVFNEPIMIDAARLPPMGPASIFMQGTKRMPGTAITKSVFANE 60
           MID G+  TT   +LK  +   P ++        G AS     +  +P  A +   +   
Sbjct: 117 MIDNGFPLTTEPSILKEMI-APPNLVSKMLSVVTGNAS---NVSDTLPSGAGSCVPWRPT 172

Query: 61  SGGKKREEIFVDVIEKISVTFNSSGFILTSEIDGTIQMKSYLTGNPEIRLALNEDLSIGT 120
                  E++VD++E++    N  G ++  EI G +QM S LTG P++ L+         
Sbjct: 173 DPKYSSNEVYVDLVEEMDAIVNRDGELVKCEIYGEVQMNSQLTGFPDLTLSF-------- 224

Query: 121 SDYRGSGAVILDDCNFHESVHLDSFDVDRTLSLVPPDGEFPVMNYRMTQPFKPPFRINAL 180
                +   IL+D  FH  V    ++  + LS VPPDGEF +M+YR+ +    P  +   
Sbjct: 225 -----ANPSILEDMRFHPCVRYRPWESHQVLSFVPPDGEFKLMSYRVKKLKNTPVYVKPQ 279

Query: 181 I-EETGPLKAEVTIKIRAEFNSSINANTVLVQMPLPTSTARVNFELEPGAVGHTTDFKET 239
           I  ++G  +  V + IR++   +I + T+  Q+P   S+A +       +  H T    +
Sbjct: 280 ITSDSGTCRISVLVGIRSDPGKTIESITLSFQLPHCVSSADL-------SSNHGTVTILS 332

Query: 240 NKRLEWGIKKVVGGSEHTLRAKLTL 264
           NK   W I ++       L   L L
Sbjct: 333 NKTCTWTIGRIPKDKTPCLSGTLAL 357