Miyakogusa Predicted Gene
- Lj1g3v2128340.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v2128340.1 Non Chatacterized Hit- tr|I1JT85|I1JT85_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.9231
PE=,92.99,0,Adap_comp_sub,Clathrin adaptor, mu subunit, C-terminal;
Clat_adaptor_s,AP complex, mu/sigma subunit;,CUFF.28587.1
(274 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G24550.2 | Symbols: | Clathrin adaptor complexes medium subu... 467 e-132
AT4G24550.3 | Symbols: | Clathrin adaptor complexes medium subu... 466 e-132
AT4G24550.1 | Symbols: | Clathrin adaptor complexes medium subu... 466 e-132
AT1G60780.1 | Symbols: HAP13 | Clathrin adaptor complexes medium... 171 3e-43
AT1G10730.1 | Symbols: | Clathrin adaptor complexes medium subu... 171 4e-43
AT5G46630.2 | Symbols: | Clathrin adaptor complexes medium subu... 127 1e-29
AT5G46630.1 | Symbols: | Clathrin adaptor complexes medium subu... 126 2e-29
AT1G56590.1 | Symbols: ZIP4 | Clathrin adaptor complexes medium ... 107 8e-24
>AT4G24550.2 | Symbols: | Clathrin adaptor complexes medium subunit
family protein | chr4:12675873-12678903 FORWARD
LENGTH=451
Length = 451
Score = 467 bits (1202), Expect = e-132, Method: Compositional matrix adjust.
Identities = 229/279 (82%), Positives = 247/279 (88%), Gaps = 7/279 (2%)
Query: 1 MMISQFFVLSQRGDNIVFRDYRGEVQKGSAETFFRKVKFWKEDAEGDAPPVFNVDGVNYF 60
MMISQFFVLSQRGDNIVFRDYR EV KGS ETFFRKVKFWKED +APP+FNVDGVNYF
Sbjct: 1 MMISQFFVLSQRGDNIVFRDYRAEVPKGSTETFFRKVKFWKEDGNAEAPPIFNVDGVNYF 60
Query: 61 HVKAAGLLFVATTRVNVSPSLVLGLLQRIARVIKDYLGVLNEDSFRKNFVLVYELLDEMI 120
HVK GL FVATTRVNVSPSLVL LLQRIARVIKDYLGVLNEDSFRKNFVLVYELLDE+I
Sbjct: 61 HVKVVGLYFVATTRVNVSPSLVLELLQRIARVIKDYLGVLNEDSFRKNFVLVYELLDEVI 120
Query: 121 DFGYVQTTSTELLKSYVFNEPIMIDAARLPPMGPASIFMQGTKRMPGTAITKSVFANESG 180
DFGYVQTTSTE+LKSY+FNEPI++ ARL P+ PA+IF QG KRMPGTA+TKSV AN+ G
Sbjct: 121 DFGYVQTTSTEVLKSYIFNEPIVVSPARLQPIDPAAIFTQGAKRMPGTAVTKSVVANDPG 180
Query: 181 GKKREEIFVDVIEKISVTFNSSGFILTSEIDGTIQMKSYLTGNPEIRLALNEDLSIGTS- 239
G++REEIFVD+IEKISVTF+SSG+ILTSEIDGTIQMKSYL+GNPEIRLALNEDL+IG
Sbjct: 181 GRRREEIFVDIIEKISVTFSSSGYILTSEIDGTIQMKSYLSGNPEIRLALNEDLNIGRGG 240
Query: 240 ----DYRGS--GAVILDDCNFHESVHLDSFDVDRTLSLV 272
DYR S VILDDCNFHESV LDSFD DRTLSLV
Sbjct: 241 RSVYDYRSSSGSGVILDDCNFHESVRLDSFDSDRTLSLV 279
>AT4G24550.3 | Symbols: | Clathrin adaptor complexes medium subunit
family protein | chr4:12675873-12678689 FORWARD
LENGTH=385
Length = 385
Score = 466 bits (1200), Expect = e-132, Method: Compositional matrix adjust.
Identities = 229/279 (82%), Positives = 247/279 (88%), Gaps = 7/279 (2%)
Query: 1 MMISQFFVLSQRGDNIVFRDYRGEVQKGSAETFFRKVKFWKEDAEGDAPPVFNVDGVNYF 60
MMISQFFVLSQRGDNIVFRDYR EV KGS ETFFRKVKFWKED +APP+FNVDGVNYF
Sbjct: 1 MMISQFFVLSQRGDNIVFRDYRAEVPKGSTETFFRKVKFWKEDGNAEAPPIFNVDGVNYF 60
Query: 61 HVKAAGLLFVATTRVNVSPSLVLGLLQRIARVIKDYLGVLNEDSFRKNFVLVYELLDEMI 120
HVK GL FVATTRVNVSPSLVL LLQRIARVIKDYLGVLNEDSFRKNFVLVYELLDE+I
Sbjct: 61 HVKVVGLYFVATTRVNVSPSLVLELLQRIARVIKDYLGVLNEDSFRKNFVLVYELLDEVI 120
Query: 121 DFGYVQTTSTELLKSYVFNEPIMIDAARLPPMGPASIFMQGTKRMPGTAITKSVFANESG 180
DFGYVQTTSTE+LKSY+FNEPI++ ARL P+ PA+IF QG KRMPGTA+TKSV AN+ G
Sbjct: 121 DFGYVQTTSTEVLKSYIFNEPIVVSPARLQPIDPAAIFTQGAKRMPGTAVTKSVVANDPG 180
Query: 181 GKKREEIFVDVIEKISVTFNSSGFILTSEIDGTIQMKSYLTGNPEIRLALNEDLSIGTS- 239
G++REEIFVD+IEKISVTF+SSG+ILTSEIDGTIQMKSYL+GNPEIRLALNEDL+IG
Sbjct: 181 GRRREEIFVDIIEKISVTFSSSGYILTSEIDGTIQMKSYLSGNPEIRLALNEDLNIGRGG 240
Query: 240 ----DYRGS--GAVILDDCNFHESVHLDSFDVDRTLSLV 272
DYR S VILDDCNFHESV LDSFD DRTLSLV
Sbjct: 241 RSVYDYRSSSGSGVILDDCNFHESVRLDSFDSDRTLSLV 279
>AT4G24550.1 | Symbols: | Clathrin adaptor complexes medium subunit
family protein | chr4:12675873-12678526 FORWARD
LENGTH=380
Length = 380
Score = 466 bits (1199), Expect = e-132, Method: Compositional matrix adjust.
Identities = 229/279 (82%), Positives = 247/279 (88%), Gaps = 7/279 (2%)
Query: 1 MMISQFFVLSQRGDNIVFRDYRGEVQKGSAETFFRKVKFWKEDAEGDAPPVFNVDGVNYF 60
MMISQFFVLSQRGDNIVFRDYR EV KGS ETFFRKVKFWKED +APP+FNVDGVNYF
Sbjct: 1 MMISQFFVLSQRGDNIVFRDYRAEVPKGSTETFFRKVKFWKEDGNAEAPPIFNVDGVNYF 60
Query: 61 HVKAAGLLFVATTRVNVSPSLVLGLLQRIARVIKDYLGVLNEDSFRKNFVLVYELLDEMI 120
HVK GL FVATTRVNVSPSLVL LLQRIARVIKDYLGVLNEDSFRKNFVLVYELLDE+I
Sbjct: 61 HVKVVGLYFVATTRVNVSPSLVLELLQRIARVIKDYLGVLNEDSFRKNFVLVYELLDEVI 120
Query: 121 DFGYVQTTSTELLKSYVFNEPIMIDAARLPPMGPASIFMQGTKRMPGTAITKSVFANESG 180
DFGYVQTTSTE+LKSY+FNEPI++ ARL P+ PA+IF QG KRMPGTA+TKSV AN+ G
Sbjct: 121 DFGYVQTTSTEVLKSYIFNEPIVVSPARLQPIDPAAIFTQGAKRMPGTAVTKSVVANDPG 180
Query: 181 GKKREEIFVDVIEKISVTFNSSGFILTSEIDGTIQMKSYLTGNPEIRLALNEDLSIGTS- 239
G++REEIFVD+IEKISVTF+SSG+ILTSEIDGTIQMKSYL+GNPEIRLALNEDL+IG
Sbjct: 181 GRRREEIFVDIIEKISVTFSSSGYILTSEIDGTIQMKSYLSGNPEIRLALNEDLNIGRGG 240
Query: 240 ----DYRGS--GAVILDDCNFHESVHLDSFDVDRTLSLV 272
DYR S VILDDCNFHESV LDSFD DRTLSLV
Sbjct: 241 RSVYDYRSSSGSGVILDDCNFHESVRLDSFDSDRTLSLV 279
>AT1G60780.1 | Symbols: HAP13 | Clathrin adaptor complexes medium
subunit family protein | chr1:22369289-22371885 REVERSE
LENGTH=428
Length = 428
Score = 171 bits (434), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 95/271 (35%), Positives = 154/271 (56%), Gaps = 19/271 (7%)
Query: 4 SQFFVLSQRGDNIVFRDYRGEVQKGSAETFFRKVKFWKEDAEGDAPPVFNVDGVNYFHVK 63
S F+L +G +V+RDYRG+V AE FF K+ + D++ + P ++ +GV Y V+
Sbjct: 6 SALFLLDIKGRVLVWRDYRGDVSAAQAERFFTKLIEKEGDSQSNDPVAYD-NGVTYMFVQ 64
Query: 64 AAGLLFVATTRVNVSPSLVLGLLQRIARVIKDYLGVLNEDSFRKNFVLVYELLDEMIDFG 123
+ + + +R N + + +L L R+ V K Y L E+S R NFV+VYELLDEM+DFG
Sbjct: 65 HSNVYLMIASRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDFG 124
Query: 124 YVQTTSTELLKSYVFNEPIMIDAARLPPMGPASIFMQGTKRMPGTAITKSV-FANESGGK 182
Y Q T +L ++ + ++ + PPM A+T +V + +E
Sbjct: 125 YPQYTEARILSEFIKTDAYRMEVTQRPPM----------------AVTNAVSWRSEGIQY 168
Query: 183 KREEIFVDVIEKISVTFNSSGFILTSEIDGTIQMKSYLTGNPEIRLALNEDLSIGTSDYR 242
K+ E+F+DVIE +++ NS+G I+ S++ G ++M++YLTG PE +L LN+ + +
Sbjct: 169 KKNEVFLDVIENVNILVNSNGQIVRSDVVGALKMRTYLTGMPECKLGLNDRVLLEAQGRA 228
Query: 243 GSGAVI-LDDCNFHESVHLDSFDVDRTLSLV 272
G I L+D FH+ V L F+ DRT+S +
Sbjct: 229 TKGKAIDLEDIKFHQCVRLARFENDRTISFI 259
>AT1G10730.1 | Symbols: | Clathrin adaptor complexes medium subunit
family protein | chr1:3565463-3567779 FORWARD LENGTH=428
Length = 428
Score = 171 bits (434), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 96/271 (35%), Positives = 153/271 (56%), Gaps = 19/271 (7%)
Query: 4 SQFFVLSQRGDNIVFRDYRGEVQKGSAETFFRKVKFWKEDAEGDAPPVFNVDGVNYFHVK 63
S F+L +G +V+RDYRG+V AE FF K+ + D++ + P ++ +GV Y V+
Sbjct: 6 SALFLLDIKGRVLVWRDYRGDVTAAQAERFFTKLIETEGDSQSNDPVAYD-NGVTYMFVQ 64
Query: 64 AAGLLFVATTRVNVSPSLVLGLLQRIARVIKDYLGVLNEDSFRKNFVLVYELLDEMIDFG 123
+ + + +R N + + +L L R+ V K Y L E+S R NFV+VYELLDEM+DFG
Sbjct: 65 HSNIYLMIASRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDFG 124
Query: 124 YVQTTSTELLKSYVFNEPIMIDAARLPPMGPASIFMQGTKRMPGTAITKSVFANESGGK- 182
Y Q T +L ++ + ++ + PPM A+T SV G K
Sbjct: 125 YPQFTEARILSEFIKTDAYRMEVTQRPPM----------------AVTNSVSWRSEGLKF 168
Query: 183 KREEIFVDVIEKISVTFNSSGFILTSEIDGTIQMKSYLTGNPEIRLALNEDLSIGTSDYR 242
K+ E+F+DVIE +++ NS+G I+ S++ G ++M++YL+G PE +L LN+ + +
Sbjct: 169 KKNEVFLDVIESVNILVNSNGQIVRSDVVGALKMRTYLSGMPECKLGLNDRILLEAQGRA 228
Query: 243 GSGAVI-LDDCNFHESVHLDSFDVDRTLSLV 272
G I L+D FH+ V L F+ DRT+S +
Sbjct: 229 IKGKAIDLEDIKFHQCVRLARFENDRTISFI 259
>AT5G46630.2 | Symbols: | Clathrin adaptor complexes medium subunit
family protein | chr5:18920580-18923060 FORWARD
LENGTH=441
Length = 441
Score = 127 bits (318), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 84/281 (29%), Positives = 138/281 (49%), Gaps = 27/281 (9%)
Query: 4 SQFFVLSQRGDNIVFRDYRGEVQKGSAETFFRKVKFWKEDAEGDAPPVFNVDGVNYFHVK 63
S + L+ RGD ++ R YR +V + F + KE PV + G ++ +++
Sbjct: 6 SAIYFLNLRGDVLINRTYRDDVGGNMVDAFRTHIMQTKELGNC---PVRQIGGCSFVYMR 62
Query: 64 AAGLLFVATTRVNVSPSLVLGLLQRIARVIKDYLG-VLNEDSFRKNFVLVYELLDEMIDF 122
+ + V N + + + + K Y G +ED+ R NFVL+YELLDE++DF
Sbjct: 63 ISNVYIVIVVSSNANVACGFKFVVEAVALFKSYFGGAFDEDAIRNNFVLIYELLDEIMDF 122
Query: 123 GYVQTTSTELLKSYVFNEPIMIDAARLPPMGPASIFMQGTKRMPGTAITKSV-----FAN 177
GY Q S E+LK Y+ E G S F K P T V +
Sbjct: 123 GYPQNLSPEILKLYITQE------------GVRSPFSSKPKDKPVPNATLQVTGAVGWRR 170
Query: 178 ESGGKKREEIFVDVIEKISVTFNSSGFILTSEIDGTIQMKSYLTGNPEIRLALNEDLSIG 237
E K+ E+F+D++E +++ +S G +L ++ G + MK +L+G P+++L LN+ + +
Sbjct: 171 EGLAYKKNEVFLDIVESVNLLMSSKGNVLRCDVTGKVLMKCFLSGMPDLKLGLNDKIGLE 230
Query: 238 -----TSDYRGSGAVI-LDDCNFHESVHLDSFDVDRTLSLV 272
S SG I LDD FH+ V+L F+ ++T+S V
Sbjct: 231 KESEMKSRPAKSGKTIELDDVTFHQCVNLTRFNSEKTVSFV 271
>AT5G46630.1 | Symbols: | Clathrin adaptor complexes medium subunit
family protein | chr5:18920580-18923252 FORWARD
LENGTH=438
Length = 438
Score = 126 bits (316), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 81/276 (29%), Positives = 139/276 (50%), Gaps = 17/276 (6%)
Query: 4 SQFFVLSQRGDNIVFRDYRGEVQKGSAETFFRKVKFWKEDAEGDAPPVFNVDGVNYFHVK 63
S + L+ RGD ++ R YR +V + F + KE PV + G ++ +++
Sbjct: 6 SAIYFLNLRGDVLINRTYRDDVGGNMVDAFRTHIMQTKELGNC---PVRQIGGCSFVYMR 62
Query: 64 AAGLLFVATTRVNVSPSLVLGLLQRIARVIKDYLG-VLNEDSFRKNFVLVYELLDEMIDF 122
+ + V N + + + + K Y G +ED+ R NFVL+YELLDE++DF
Sbjct: 63 ISNVYIVIVVSSNANVACGFKFVVEAVALFKSYFGGAFDEDAIRNNFVLIYELLDEIMDF 122
Query: 123 GYVQTTSTELLKSYVFNEPIMIDAARLPPMGPASIFMQGTKRMPGTAITKSVFANESGGK 182
GY Q S E+LK Y+ E + + P P T ++ G + E
Sbjct: 123 GYPQNLSPEILKLYITQEGVRSPFSSKPKDKPVP---NATLQVTGAV----GWRREGLAY 175
Query: 183 KREEIFVDVIEKISVTFNSSGFILTSEIDGTIQMKSYLTGNPEIRLALNEDLSIG----- 237
K+ E+F+D++E +++ +S G +L ++ G + MK +L+G P+++L LN+ + +
Sbjct: 176 KKNEVFLDIVESVNLLMSSKGNVLRCDVTGKVLMKCFLSGMPDLKLGLNDKIGLEKESEM 235
Query: 238 TSDYRGSGAVI-LDDCNFHESVHLDSFDVDRTLSLV 272
S SG I LDD FH+ V+L F+ ++T+S V
Sbjct: 236 KSRPAKSGKTIELDDVTFHQCVNLTRFNSEKTVSFV 271
>AT1G56590.1 | Symbols: ZIP4 | Clathrin adaptor complexes medium
subunit family protein | chr1:21202250-21204697 REVERSE
LENGTH=415
Length = 415
Score = 107 bits (267), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 79/275 (28%), Positives = 130/275 (47%), Gaps = 26/275 (9%)
Query: 2 MISQFFVLSQRGDNIVFRDYRGEVQKGSAETFFRKVKFWKED-AEGD---APPVFNVDGV 57
M+ F++S G+ ++ + G S +F W + ++GD A PV
Sbjct: 1 MLQCIFLISDSGEVMLEKQLTGHRVDRSICAWF-----WDQYISQGDSFKALPVIASPTH 55
Query: 58 NYFHVKAAGLLFVATTRVNVSPSLVLGLLQRIARVIKDYLGVLNEDSFRKNFVLVYELLD 117
F + G+ F+A ++V + P + + L R+A V+ +YLG LNED + NF++VYELLD
Sbjct: 56 YLFQIVRDGITFLACSQVEMPPLMAIEFLCRVADVLSEYLGGLNEDLIKDNFIIVYELLD 115
Query: 118 EMIDFGYVQTTSTELLKSYVFNEPIMIDAARLPPMGPASIFMQGTKRMPGTAITKSVFAN 177
EMID G+ TT +LK + P ++ G AS + +P A + +
Sbjct: 116 EMIDNGFPLTTEPSILKEMI-APPNLVSKMLSVVTGNAS---NVSDTLPSGAGSCVPWRP 171
Query: 178 ESGGKKREEIFVDVIEKISVTFNSSGFILTSEIDGTIQMKSYLTGNPEIRLALNEDLSIG 237
E++VD++E++ N G ++ EI G +QM S LTG P++ L+
Sbjct: 172 TDPKYSSNEVYVDLVEEMDAIVNRDGELVKCEIYGEVQMNSQLTGFPDLTLSF------- 224
Query: 238 TSDYRGSGAVILDDCNFHESVHLDSFDVDRTLSLV 272
+ IL+D FH V ++ + LS V
Sbjct: 225 ------ANPSILEDMRFHPCVRYRPWESHQVLSFV 253