Miyakogusa Predicted Gene

Lj1g3v2126140.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2126140.1 Non Chatacterized Hit- tr|I1JDN0|I1JDN0_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.19114 PE,66.67,2e-19,
,CUFF.28573.1
         (128 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G38060.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    57   3e-09
AT5G38060.2 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    57   3e-09

>AT5G38060.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: chloroplast;
           BEST Arabidopsis thaliana protein match is: unknown
           protein (TAIR:AT1G65000.1); Has 1807 Blast hits to 1807
           proteins in 277 species: Archae - 0; Bacteria - 0;
           Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
           Other Eukaryotes - 339 (source: NCBI BLink). |
           chr5:15189490-15189964 FORWARD LENGTH=134
          Length = 134

 Score = 57.4 bits (137), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 26/41 (63%), Positives = 29/41 (70%)

Query: 75  CSTLNQKNNINLRTCKNCKTQFDPALNHPRAGRFHTAHNGA 115
           C+  +      LRTCKNCKTQFDP LN+PRA RFHTAH G 
Sbjct: 44  CTASSSDGPKTLRTCKNCKTQFDPLLNNPRACRFHTAHFGG 84


>AT5G38060.2 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: chloroplast; Has
           30201 Blast hits to 17322 proteins in 780 species:
           Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi -
           3422; Plants - 5037; Viruses - 0; Other Eukaryotes -
           2996 (source: NCBI BLink). | chr5:15189490-15189964
           FORWARD LENGTH=122
          Length = 122

 Score = 57.0 bits (136), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 26/45 (57%), Positives = 31/45 (68%)

Query: 75  CSTLNQKNNINLRTCKNCKTQFDPALNHPRAGRFHTAHNGATPVN 119
           C+  +      LRTCKNCKTQFDP LN+PRA RFHTAH G   ++
Sbjct: 44  CTASSSDGPKTLRTCKNCKTQFDPLLNNPRACRFHTAHFGGGTMD 88