Miyakogusa Predicted Gene
- Lj1g3v2125960.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v2125960.1 Non Chatacterized Hit- tr|D7L1U6|D7L1U6_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,70,2e-19,Rer1,Retrieval of early ER protein Rer1; PROTEIN
RER1,Retrieval of early ER protein
Rer1,NODE_58446_length_239_cov_286.460266.path1.1
(65 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G21600.1 | Symbols: ATRER1B, RER1B | endoplasmatic reticulum ... 100 2e-22
AT4G39220.1 | Symbols: ATRER1A | Rer1 family protein | chr4:1826... 99 5e-22
AT2G23310.1 | Symbols: ATRER1C1 | Rer1 family protein | chr2:991... 96 5e-21
AT2G23310.2 | Symbols: ATRER1C1 | Rer1 family protein | chr2:991... 92 7e-20
AT2G18240.1 | Symbols: | Rer1 family protein | chr2:7935466-793... 69 9e-13
AT2G18240.2 | Symbols: | Rer1 family protein | chr2:7935466-793... 69 9e-13
>AT2G21600.1 | Symbols: ATRER1B, RER1B | endoplasmatic reticulum
retrieval protein 1B | chr2:9243550-9244579 FORWARD
LENGTH=195
Length = 195
Score = 100 bits (249), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 44/59 (74%), Positives = 51/59 (86%)
Query: 1 MTFFSAFDVPVFWPILLFYWVTLFTLTMRRQIAHMIRYKYVPFSFGKMRYDGKRASAES 59
MTFFS FDVPVFWPILL YWV LF LTMRRQIAHMI++KY+PFS GK +Y G+++SA S
Sbjct: 130 MTFFSVFDVPVFWPILLCYWVVLFVLTMRRQIAHMIKHKYIPFSIGKQKYSGRKSSANS 188
>AT4G39220.1 | Symbols: ATRER1A | Rer1 family protein |
chr4:18264280-18265531 FORWARD LENGTH=191
Length = 191
Score = 99.4 bits (246), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 43/58 (74%), Positives = 49/58 (84%)
Query: 1 MTFFSAFDVPVFWPILLFYWVTLFTLTMRRQIAHMIRYKYVPFSFGKMRYDGKRASAE 58
MTFFS FDVPVFWPILL YW+ LF LTMRRQIAHMI+YKY+PFSFGK +Y G+ +S
Sbjct: 131 MTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYKYIPFSFGKQKYGGRSSSGS 188
>AT2G23310.1 | Symbols: ATRER1C1 | Rer1 family protein |
chr2:9917643-9918913 FORWARD LENGTH=212
Length = 212
Score = 95.9 bits (237), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 44/60 (73%), Positives = 49/60 (81%)
Query: 1 MTFFSAFDVPVFWPILLFYWVTLFTLTMRRQIAHMIRYKYVPFSFGKMRYDGKRASAEST 60
MTFF FDVPVFWPILLFYWV LF LTMR+QI HMI+Y+YVPFSFGK +Y K A ES+
Sbjct: 152 MTFFEVFDVPVFWPILLFYWVMLFFLTMRKQIQHMIKYRYVPFSFGKKQYGKKPAPTESS 211
>AT2G23310.2 | Symbols: ATRER1C1 | Rer1 family protein |
chr2:9917643-9918913 FORWARD LENGTH=211
Length = 211
Score = 92.0 bits (227), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 44/60 (73%), Positives = 49/60 (81%), Gaps = 1/60 (1%)
Query: 1 MTFFSAFDVPVFWPILLFYWVTLFTLTMRRQIAHMIRYKYVPFSFGKMRYDGKRASAEST 60
MTFF FDVPVFWPILLFYWV LF LTMR+QI HMI+Y+YVPFSFGK +Y K A ES+
Sbjct: 152 MTFFEVFDVPVFWPILLFYWVMLFFLTMRKQIQHMIKYRYVPFSFGK-KYGKKPAPTESS 210
>AT2G18240.1 | Symbols: | Rer1 family protein |
chr2:7935466-7936464 FORWARD LENGTH=221
Length = 221
Score = 68.6 bits (166), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 30/47 (63%), Positives = 36/47 (76%)
Query: 1 MTFFSAFDVPVFWPILLFYWVTLFTLTMRRQIAHMIRYKYVPFSFGK 47
MTFFS DVPVFWPILL YW+ L++LTM+R I HM +Y+Y PF K
Sbjct: 134 MTFFSFLDVPVFWPILLCYWLVLYSLTMKRLIVHMFKYRYFPFDVRK 180
>AT2G18240.2 | Symbols: | Rer1 family protein |
chr2:7935466-7936464 FORWARD LENGTH=220
Length = 220
Score = 68.6 bits (166), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 30/47 (63%), Positives = 36/47 (76%)
Query: 1 MTFFSAFDVPVFWPILLFYWVTLFTLTMRRQIAHMIRYKYVPFSFGK 47
MTFFS DVPVFWPILL YW+ L++LTM+R I HM +Y+Y PF K
Sbjct: 134 MTFFSFLDVPVFWPILLCYWLVLYSLTMKRLIVHMFKYRYFPFDVRK 180