Miyakogusa Predicted Gene

Lj1g3v2124910.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2124910.1 Non Chatacterized Hit- tr|I1KQB7|I1KQB7_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.45155
PE,77.36,4e-17,Nucleoporin_N,Nucleoporin, Nup133/Nup155-like,
N-terminal,CUFF.28558.1
         (74 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G14850.1 | Symbols: NUP155 | nucleoporin 155 | chr1:5116921-5...    74   1e-14

>AT1G14850.1 | Symbols: NUP155 | nucleoporin 155 |
           chr1:5116921-5123259 REVERSE LENGTH=1464
          Length = 1464

 Score = 74.3 bits (181), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/56 (64%), Positives = 39/56 (69%), Gaps = 2/56 (3%)

Query: 18  PLVEVEVVNRWELPPVLKERCIAAGVEGSAFGGIFPEICRAWATFHNSFFLWRFDK 73
           PL+EV     WELP VL ER   AG EG+A  GIFPEI RAWA+  NS FLWRFDK
Sbjct: 56  PLIEVG--ETWELPSVLIERYNTAGGEGTALCGIFPEIRRAWASVDNSLFLWRFDK 109