Miyakogusa Predicted Gene

Lj1g3v2098330.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2098330.1 tr|A4S8T6|A4S8T6_OSTLU Predicted protein
(Fragment) OS=Ostreococcus lucimarinus (strain CCE9901)
GN=,35.9,2e-18,no description,NULL; NTF2-like,NULL; SnoaL_3,NULL;
UVR,UVR domain,CUFF.28518.1
         (227 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G09250.1 | Symbols:  | Nuclear transport factor 2 (NTF2) fami...   193   9e-50
AT3G09250.2 | Symbols:  | Nuclear transport factor 2 (NTF2) fami...   193   1e-49
AT4G10925.3 | Symbols:  | Nuclear transport factor 2 (NTF2) fami...    58   4e-09
AT4G10925.2 | Symbols:  | Nuclear transport factor 2 (NTF2) fami...    58   4e-09
AT4G10925.1 | Symbols:  | Nuclear transport factor 2 (NTF2) fami...    58   4e-09

>AT3G09250.1 | Symbols:  | Nuclear transport factor 2 (NTF2) family
           protein | chr3:2839080-2840294 FORWARD LENGTH=244
          Length = 244

 Score =  193 bits (490), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 87/149 (58%), Positives = 118/149 (79%), Gaps = 1/149 (0%)

Query: 80  AKSEDSEGTLSSDNVAVDETTLVQELESAIAEENYAKAAEIRDILKNLKKDRETTLFGAN 139
            K E++  T   +++++DE TL Q+LE+A+ EENY +AA+IRD LK L++D + ++  AN
Sbjct: 69  VKREENNQTADVESISMDENTLKQDLETAVQEENYVEAAKIRDKLKELQEDNKASVLSAN 128

Query: 140 SRFYESFKNGDLAAMQAMWAKSDEVCCVHPGMKGISGYDDVIESWNIVWANYEFPLEIKL 199
           SRFY+SF+NGDLAAMQ++W+KS   CCVHPG KGI+GYD V+ESW +VW NYEFPL I+L
Sbjct: 129 SRFYQSFRNGDLAAMQSLWSKSGNPCCVHPGAKGITGYDYVMESWELVWMNYEFPLLIEL 188

Query: 200 EDIKFHVGEDMGYVTCMEFVKTKG-GRWG 227
           +D++ HV  ++GYVTCMEFVKTKG   WG
Sbjct: 189 KDVEVHVRGEVGYVTCMEFVKTKGSSSWG 217


>AT3G09250.2 | Symbols:  | Nuclear transport factor 2 (NTF2) family
           protein | chr3:2839488-2840585 FORWARD LENGTH=246
          Length = 246

 Score =  193 bits (490), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 87/149 (58%), Positives = 118/149 (79%), Gaps = 1/149 (0%)

Query: 80  AKSEDSEGTLSSDNVAVDETTLVQELESAIAEENYAKAAEIRDILKNLKKDRETTLFGAN 139
            K E++  T   +++++DE TL Q+LE+A+ EENY +AA+IRD LK L++D + ++  AN
Sbjct: 55  VKREENNQTADVESISMDENTLKQDLETAVQEENYVEAAKIRDKLKELQEDNKASVLSAN 114

Query: 140 SRFYESFKNGDLAAMQAMWAKSDEVCCVHPGMKGISGYDDVIESWNIVWANYEFPLEIKL 199
           SRFY+SF+NGDLAAMQ++W+KS   CCVHPG KGI+GYD V+ESW +VW NYEFPL I+L
Sbjct: 115 SRFYQSFRNGDLAAMQSLWSKSGNPCCVHPGAKGITGYDYVMESWELVWMNYEFPLLIEL 174

Query: 200 EDIKFHVGEDMGYVTCMEFVKTKG-GRWG 227
           +D++ HV  ++GYVTCMEFVKTKG   WG
Sbjct: 175 KDVEVHVRGEVGYVTCMEFVKTKGSSSWG 203


>AT4G10925.3 | Symbols:  | Nuclear transport factor 2 (NTF2) family
           protein | chr4:6702987-6704283 REVERSE LENGTH=231
          Length = 231

 Score = 58.2 bits (139), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 49/90 (54%), Gaps = 1/90 (1%)

Query: 135 LFGANSRFYESFKNGDLAAMQAMWAKSDEVCCVHPGMKGISGYDDVIESWNIVWANYEFP 194
           +   N+ F+   ++  L AM  +W  SD V C+H   +  SGY++VI+SW + + N+E  
Sbjct: 108 IISVNTEFFTIIRDRALQAMARLWLNSDYVKCIHASGELFSGYNEVIQSWQLCF-NWEQG 166

Query: 195 LEIKLEDIKFHVGEDMGYVTCMEFVKTKGG 224
            + ++  ++  +  DM +VT   ++   GG
Sbjct: 167 FDFQVHTVRTRILTDMAWVTMKAYLNVDGG 196


>AT4G10925.2 | Symbols:  | Nuclear transport factor 2 (NTF2) family
           protein | chr4:6702987-6704283 REVERSE LENGTH=231
          Length = 231

 Score = 58.2 bits (139), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 49/90 (54%), Gaps = 1/90 (1%)

Query: 135 LFGANSRFYESFKNGDLAAMQAMWAKSDEVCCVHPGMKGISGYDDVIESWNIVWANYEFP 194
           +   N+ F+   ++  L AM  +W  SD V C+H   +  SGY++VI+SW + + N+E  
Sbjct: 108 IISVNTEFFTIIRDRALQAMARLWLNSDYVKCIHASGELFSGYNEVIQSWQLCF-NWEQG 166

Query: 195 LEIKLEDIKFHVGEDMGYVTCMEFVKTKGG 224
            + ++  ++  +  DM +VT   ++   GG
Sbjct: 167 FDFQVHTVRTRILTDMAWVTMKAYLNVDGG 196


>AT4G10925.1 | Symbols:  | Nuclear transport factor 2 (NTF2) family
           protein | chr4:6702987-6704283 REVERSE LENGTH=231
          Length = 231

 Score = 58.2 bits (139), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 49/90 (54%), Gaps = 1/90 (1%)

Query: 135 LFGANSRFYESFKNGDLAAMQAMWAKSDEVCCVHPGMKGISGYDDVIESWNIVWANYEFP 194
           +   N+ F+   ++  L AM  +W  SD V C+H   +  SGY++VI+SW + + N+E  
Sbjct: 108 IISVNTEFFTIIRDRALQAMARLWLNSDYVKCIHASGELFSGYNEVIQSWQLCF-NWEQG 166

Query: 195 LEIKLEDIKFHVGEDMGYVTCMEFVKTKGG 224
            + ++  ++  +  DM +VT   ++   GG
Sbjct: 167 FDFQVHTVRTRILTDMAWVTMKAYLNVDGG 196