Miyakogusa Predicted Gene

Lj1g3v2098300.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2098300.1 Non Chatacterized Hit- tr|D7M6A7|D7M6A7_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,36.7,6e-19,WGG,Pre-rRNA-processing protein TSR2; seg,NULL;
SUBFAMILY NOT NAMED,NULL; UNCHARACTERIZED,NULL,CUFF.28514.1
         (244 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G27990.1 | Symbols:  | Pre-rRNA-processing protein TSR2, cons...   104   5e-23
AT3G22510.1 | Symbols:  | Pre-rRNA-processing protein TSR2, cons...    76   2e-14

>AT5G27990.1 | Symbols:  | Pre-rRNA-processing protein TSR2,
           conserved region | chr5:10017358-10018265 FORWARD
           LENGTH=184
          Length = 184

 Score =  104 bits (260), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 68/194 (35%), Positives = 104/194 (53%), Gaps = 18/194 (9%)

Query: 1   MEGSKFLQGESKRVFSEGIDLVLNRWSALQTAVENEWGGRDSNLKAHQLAADVLSWFTQS 60
           M  +  L  E++ +  EGI L+L RW+A++ AVEN WGGRDS  KA++  A V  +F QS
Sbjct: 1   MNQNATLTVEARDILKEGIGLILWRWTAMRAAVENGWGGRDSQAKANETVATVFDFFIQS 60

Query: 61  KEPLY-IDDLEAIFDEGMLSLNVEVEDGSIEEVAGNLMAMHDECVEGNFRSIDILREANI 119
           K+P+  I+ L  + D+G+  LN   EDGS++EVA  L+ ++++C  GN+  ++ LR A  
Sbjct: 61  KDPVKDIEKLGDLLDKGLDELNTTAEDGSVDEVANLLVDLYEDCCNGNYEMLEELR-ATY 119

Query: 120 KQAARPRLAQIVXXXXXXXXXXXXXIIGGDNSSNMDVDIQNFESDMNSVNKPANEPLSKA 179
            Q +    A +V                   +++M VD  N + +      P +EP+   
Sbjct: 120 SQTS----ASVVKVSNGDDEESDDEDDD--QTTDMMVDASNQKQEA----MPVDEPV--- 166

Query: 180 AAEADDGWVAVSRR 193
              ADDGW  VS R
Sbjct: 167 ---ADDGWTVVSSR 177


>AT3G22510.1 | Symbols:  | Pre-rRNA-processing protein TSR2,
           conserved region | chr3:7973544-7974087 FORWARD
           LENGTH=124
          Length = 124

 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 40/96 (41%), Positives = 60/96 (62%), Gaps = 2/96 (2%)

Query: 14  VFSEGIDLVLNRWSALQTAVENEWGGRDSNLKAHQLAADVLSWFTQSKEPLYIDDLEAIF 73
           V    I  +L+RW  LQ AV+N+WGG DS  K+ +LA ++    +QS   + ++++E + 
Sbjct: 30  VLQRDIGELLSRWGGLQMAVKNQWGGHDSLKKSQELAHNLFHLISQSN-VITVEEIENLL 88

Query: 74  DEG-MLSLNVEVEDGSIEEVAGNLMAMHDECVEGNF 108
            E  +LS N E+EDGSIEEVA  LM +H+E + G  
Sbjct: 89  HESLLLSFNTEIEDGSIEEVAEQLMILHEEHLRGTL 124