Miyakogusa Predicted Gene
- Lj1g3v2095550.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v2095550.1 Non Chatacterized Hit- tr|J3MR49|J3MR49_ORYBR
Uncharacterized protein OS=Oryza brachyantha GN=OB08G1,25.55,1e-17,no
description,NULL; coiled-coil,NULL; KH_TYPE_1,K Homology domain, type
1; Eukaryotic type KH-domai,CUFF.28458.1
(683 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G51580.1 | Symbols: | RNA-binding KH domain-containing prote... 236 4e-62
AT5G15270.1 | Symbols: | RNA-binding KH domain-containing prote... 220 2e-57
AT5G15270.2 | Symbols: | RNA-binding KH domain-containing prote... 220 2e-57
AT5G53060.1 | Symbols: | RNA-binding KH domain-containing prote... 187 3e-47
AT5G46190.1 | Symbols: | RNA-binding KH domain-containing prote... 181 1e-45
AT1G14170.3 | Symbols: | RNA-binding KH domain-containing prote... 172 9e-43
AT1G14170.2 | Symbols: | RNA-binding KH domain-containing prote... 172 1e-42
AT1G14170.1 | Symbols: | RNA-binding KH domain-containing prote... 171 1e-42
AT5G64390.1 | Symbols: HEN4 | RNA-binding KH domain-containing p... 169 4e-42
AT5G64390.3 | Symbols: HEN4 | RNA-binding KH domain-containing p... 168 1e-41
AT4G18375.2 | Symbols: | RNA-binding KH domain-containing prote... 141 1e-33
AT5G64390.2 | Symbols: HEN4 | RNA-binding KH domain-containing p... 132 1e-30
AT4G18375.1 | Symbols: | RNA-binding KH domain-containing prote... 127 3e-29
AT2G22600.1 | Symbols: | RNA-binding KH domain-containing prote... 117 3e-26
AT3G04610.1 | Symbols: FLK | RNA-binding KH domain-containing pr... 105 9e-23
AT4G26000.1 | Symbols: PEP | RNA-binding KH domain-containing pr... 102 1e-21
AT5G09560.1 | Symbols: | RNA-binding KH domain-containing prote... 93 5e-19
AT2G03110.1 | Symbols: | RNA binding;nucleic acid binding | chr... 67 6e-11
AT5G53060.2 | Symbols: | RNA-binding KH domain-containing prote... 62 9e-10
AT1G33680.1 | Symbols: | KH domain-containing protein | chr1:12... 58 2e-08
AT4G10070.1 | Symbols: | KH domain-containing protein | chr4:62... 54 3e-07
>AT1G51580.1 | Symbols: | RNA-binding KH domain-containing protein
| chr1:19125612-19128102 FORWARD LENGTH=621
Length = 621
Score = 236 bits (602), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 183/554 (33%), Positives = 271/554 (48%), Gaps = 82/554 (14%)
Query: 156 SAIRKALSLVFDRMVEGVED-TADGDEESGKASSFVFRLLILSNQVGCLLGKGGSVIKKM 214
S+ + AL VF+R+V G + T DGDE S + R+++ NQV L+ KGG +I+K+
Sbjct: 114 SSAQMALLRVFERIVFGDDAATVDGDELDKGESEGLCRMIVRGNQVDYLMSKGGKMIQKI 173
Query: 215 SAESGAQIRILPKDKLPVCASASDEIVQITGGVEVVRKALQSVSLQLLEN--PPRDHESL 272
+SGA +RI D++P CA D ++Q+ G V+KAL V+ L E+ PP E
Sbjct: 174 REDSGAIVRISSTDQIPPCAFPGDVVIQMNGKFSSVKKALLLVTNCLQESGAPPTWDE-- 231
Query: 273 STNFTGXXXXXXXXXXXXXXXFAAGPTDTSVFHSAPSLISKFHEGAIHGRMRPSQEMLTF 332
F + P + P + F+ + +E + F
Sbjct: 232 -CPFPQPGYPPEYHSMEYHPQWDHPPPNP-----MPEDVGPFNRPVV-------EEEVAF 278
Query: 333 RLLCPAEKVGNLIGKGGAIIKSVQQETASEIKVIDAVPDSEDCVIVISGPAHPDDRISPV 392
RLLCPA+KVG+LIGKGGA+++++Q E+ + IKV D DSE+ +IVIS + + R S
Sbjct: 279 RLLCPADKVGSLIGKGGAVVRALQNESGASIKVSDPTHDSEERIIVISARENLERRHSLA 338
Query: 393 QEAVFRVQNRVARAIPDVNEHSMLARVLVSSNQIGCLLGKGGSIITEMRKLSGAHIRILG 452
Q+ V RV NR+ I +++AR+LV S IG LLGKGG +I+EMR+ +GA IR+
Sbjct: 339 QDGVMRVHNRIVE-IGFEPSAAVVARLLVHSPYIGRLLGKGGHLISEMRRATGASIRVFA 397
Query: 453 KDKIPKCASENEEVIQITGEIEAVHDALLQITTRLKHHFF-------------------- 492
KD+ K S+++E++Q+ G ++ V DAL QI RL+ F
Sbjct: 398 KDQATKYESQHDEIVQVIGNLKTVQDALFQILCRLREAMFPGRLPFQGMGGPPPPFMGPY 457
Query: 493 ---RDAYPSANYPSNPAFLDNLPPFLPYLGRRGISPPGMYSDLGPPPPHAGFPLDDRPPF 549
+ YP++P + P P+ R PG PP GF DRPP
Sbjct: 458 PEPPPPFGPRQYPASPDRYHS--PVGPF-HERHCHGPGFDR-----PPGPGF---DRPPS 506
Query: 550 MNNIHRSGIPPHIAERKPWGPQGILEG--GGHMGLPDFAGGPPRRILGFGGGNQPIITH- 606
+ W PQ ++G GG + PP GF N+PI +
Sbjct: 507 PMS---------------WTPQPGIDGHPGGMV--------PPDVNHGFALRNEPIGSEN 543
Query: 607 ---TSATXXXXXXXXXXXXIYGEDGECLRQILQISDAKIMITDPKPGAVETKIIISGTPE 663
TSA +YGE+ L I Q+S A +++ DPK G E +++SGT +
Sbjct: 544 PVMTSANVEIVIPQAYLGHVYGENCSNLNYIKQVSGANVVVHDPKAGTTEGLVVVSGTSD 603
Query: 664 QTHAAQSLIQAFVM 677
Q H AQSL+ AF++
Sbjct: 604 QAHFAQSLLHAFIL 617
Score = 99.4 bits (246), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 73/224 (32%), Positives = 109/224 (48%), Gaps = 49/224 (21%)
Query: 328 EMLTFRLLCPAEKVGNLIGKGGAIIKSVQQETASEIKVIDAVP-DSEDCVIVISGPA--- 383
E + FRLLCPA + G +IGKGG++I+ +Q T S+I+VID +P SE+ V++I P+
Sbjct: 17 ESVHFRLLCPATRTGAIIGKGGSVIRHLQSVTGSKIRVIDDIPVPSEERVVLIIAPSGKK 76
Query: 384 ----------HP-------------------DDRISP--VQEAVFRVQNRVARAIP---- 408
+P DD +P Q A+ RV R+
Sbjct: 77 KDESNVCDSENPGSEEPKQEKGSECAGTSGGDDEEAPSSAQMALLRVFERIVFGDDAATV 136
Query: 409 -----DVNEHSMLARVLVSSNQIGCLLGKGGSIITEMRKLSGAHIRILGKDKIPKCASEN 463
D E L R++V NQ+ L+ KGG +I ++R+ SGA +RI D+IP CA
Sbjct: 137 DGDELDKGESEGLCRMIVRGNQVDYLMSKGGKMIQKIREDSGAIVRISSTDQIPPCAFPG 196
Query: 464 EEVIQITGEIEAVHDALLQITTRLKHH-----FFRDAYPSANYP 502
+ VIQ+ G+ +V ALL +T L+ + +P YP
Sbjct: 197 DVVIQMNGKFSSVKKALLLVTNCLQESGAPPTWDECPFPQPGYP 240
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 60/110 (54%), Gaps = 11/110 (10%)
Query: 155 HSAIRKALSLVFDRMVE-GVEDTADGDEESGKASSFVFRLLILSNQVGCLLGKGGSVIKK 213
HS + + V +R+VE G E +A + V RLL+ S +G LLGKGG +I +
Sbjct: 335 HSLAQDGVMRVHNRIVEIGFEPSA----------AVVARLLVHSPYIGRLLGKGGHLISE 384
Query: 214 MSAESGAQIRILPKDKLPVCASASDEIVQITGGVEVVRKALQSVSLQLLE 263
M +GA IR+ KD+ S DEIVQ+ G ++ V+ AL + +L E
Sbjct: 385 MRRATGASIRVFAKDQATKYESQHDEIVQVIGNLKTVQDALFQILCRLRE 434
>AT5G15270.1 | Symbols: | RNA-binding KH domain-containing protein
| chr5:4958738-4960947 FORWARD LENGTH=548
Length = 548
Score = 220 bits (561), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 135/367 (36%), Positives = 210/367 (57%), Gaps = 20/367 (5%)
Query: 154 IHSAIRKALSLVFDRMVEGVEDTADGDEESGKASSFVFRLLILSNQVGCLLGKGGSVIKK 213
+ S + AL + DR+V +D D G+ +LL+ S+Q+GC+LG+GG +++
Sbjct: 115 VLSPAQDALFRIHDRVV--ADDARSEDSPEGE-KQVTAKLLVPSDQIGCILGRGGQIVQN 171
Query: 214 MSAESGAQIRILPKDKLPVCASASDEIVQITGGVEVVRKALQSVSLQLLENPPRDHESLS 273
+ +E+GAQIRI+ +P+CA SDE++QI+G V +V+KAL ++ +L ENP R LS
Sbjct: 172 IRSETGAQIRIVKDRNMPLCALNSDELIQISGEVLIVKKALLQIASRLHENPSRSQNLLS 231
Query: 274 TNFTGXXXXXXXXXXXXXXXFAAGPTDTSVFHSAPSLISKFHEGAIHGRMRPSQEMLTFR 333
++ G P S A ++ R P R
Sbjct: 232 SS-GGYPAGSLMSHAGGPRLVGLAPLMGSYGRDAGDWSRPLYQPP---RNDPPATEFFIR 287
Query: 334 LLCPAEKVGNLIGKGGAIIKSVQQETASEIKVIDAVPDSEDCVIVISGPAHPDDRISPVQ 393
L+ P E + ++IGKGGA+I ++QET + IKV + + DC+I IS +D SP
Sbjct: 288 LVSPVENIASVIGKGGALINQLRQETRATIKVDSSRTEGNDCLITISAREVFEDAYSPTI 347
Query: 394 EAVFRVQNRVARAIP-DVNEHSMLARVLVSSNQIGCLLGKGGSIITEMRKLSGAHIRILG 452
EAV R+Q + + + D S R+LV S++IGC+LGKGG+IITEMR+++ A+IRILG
Sbjct: 348 EAVMRLQPKCSDKVERDSGLVSFTTRLLVPSSRIGCILGKGGAIITEMRRMTKANIRILG 407
Query: 453 KDKIPKCASENEEVIQITGEIEAVHDALLQITTRLKHHFF-RDAYPSANYPSNPAFLDNL 511
K+ +PK AS+++E++QI+GE++ +AL+QIT+RL+ + F R+ SA L
Sbjct: 408 KENLPKVASDDDEMVQISGELDVAKEALIQITSRLRANVFDREGAVSA-----------L 456
Query: 512 PPFLPYL 518
P LPY+
Sbjct: 457 MPVLPYV 463
Score = 132 bits (332), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 70/172 (40%), Positives = 113/172 (65%), Gaps = 14/172 (8%)
Query: 332 FRLLCPAEKVGNLIGKGGAIIKSVQQETASEIKVIDAVPDSEDCVIVISGPAHPDDR--- 388
FR LCP +K+G++IG+GG I+K ++ +T S+I++ +A+P ++ VI I P+ +
Sbjct: 52 FRYLCPVKKIGSVIGRGGDIVKQLRNDTRSKIRIGEAIPGCDERVITIYSPSDETNAFGD 111
Query: 389 ----ISPVQEAVFRVQNRV----ARA--IPDVNEHSMLARVLVSSNQIGCLLGKGGSIIT 438
+SP Q+A+FR+ +RV AR+ P+ E + A++LV S+QIGC+LG+GG I+
Sbjct: 112 GEKVLSPAQDALFRIHDRVVADDARSEDSPE-GEKQVTAKLLVPSDQIGCILGRGGQIVQ 170
Query: 439 EMRKLSGAHIRILGKDKIPKCASENEEVIQITGEIEAVHDALLQITTRLKHH 490
+R +GA IRI+ +P CA ++E+IQI+GE+ V ALLQI +RL +
Sbjct: 171 NIRSETGAQIRIVKDRNMPLCALNSDELIQISGEVLIVKKALLQIASRLHEN 222
>AT5G15270.2 | Symbols: | RNA-binding KH domain-containing protein
| chr5:4958738-4960947 FORWARD LENGTH=548
Length = 548
Score = 220 bits (561), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 135/367 (36%), Positives = 210/367 (57%), Gaps = 20/367 (5%)
Query: 154 IHSAIRKALSLVFDRMVEGVEDTADGDEESGKASSFVFRLLILSNQVGCLLGKGGSVIKK 213
+ S + AL + DR+V +D D G+ +LL+ S+Q+GC+LG+GG +++
Sbjct: 115 VLSPAQDALFRIHDRVV--ADDARSEDSPEGE-KQVTAKLLVPSDQIGCILGRGGQIVQN 171
Query: 214 MSAESGAQIRILPKDKLPVCASASDEIVQITGGVEVVRKALQSVSLQLLENPPRDHESLS 273
+ +E+GAQIRI+ +P+CA SDE++QI+G V +V+KAL ++ +L ENP R LS
Sbjct: 172 IRSETGAQIRIVKDRNMPLCALNSDELIQISGEVLIVKKALLQIASRLHENPSRSQNLLS 231
Query: 274 TNFTGXXXXXXXXXXXXXXXFAAGPTDTSVFHSAPSLISKFHEGAIHGRMRPSQEMLTFR 333
++ G P S A ++ R P R
Sbjct: 232 SS-GGYPAGSLMSHAGGPRLVGLAPLMGSYGRDAGDWSRPLYQPP---RNDPPATEFFIR 287
Query: 334 LLCPAEKVGNLIGKGGAIIKSVQQETASEIKVIDAVPDSEDCVIVISGPAHPDDRISPVQ 393
L+ P E + ++IGKGGA+I ++QET + IKV + + DC+I IS +D SP
Sbjct: 288 LVSPVENIASVIGKGGALINQLRQETRATIKVDSSRTEGNDCLITISAREVFEDAYSPTI 347
Query: 394 EAVFRVQNRVARAIP-DVNEHSMLARVLVSSNQIGCLLGKGGSIITEMRKLSGAHIRILG 452
EAV R+Q + + + D S R+LV S++IGC+LGKGG+IITEMR+++ A+IRILG
Sbjct: 348 EAVMRLQPKCSDKVERDSGLVSFTTRLLVPSSRIGCILGKGGAIITEMRRMTKANIRILG 407
Query: 453 KDKIPKCASENEEVIQITGEIEAVHDALLQITTRLKHHFF-RDAYPSANYPSNPAFLDNL 511
K+ +PK AS+++E++QI+GE++ +AL+QIT+RL+ + F R+ SA L
Sbjct: 408 KENLPKVASDDDEMVQISGELDVAKEALIQITSRLRANVFDREGAVSA-----------L 456
Query: 512 PPFLPYL 518
P LPY+
Sbjct: 457 MPVLPYV 463
Score = 132 bits (332), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 70/172 (40%), Positives = 113/172 (65%), Gaps = 14/172 (8%)
Query: 332 FRLLCPAEKVGNLIGKGGAIIKSVQQETASEIKVIDAVPDSEDCVIVISGPAHPDDR--- 388
FR LCP +K+G++IG+GG I+K ++ +T S+I++ +A+P ++ VI I P+ +
Sbjct: 52 FRYLCPVKKIGSVIGRGGDIVKQLRNDTRSKIRIGEAIPGCDERVITIYSPSDETNAFGD 111
Query: 389 ----ISPVQEAVFRVQNRV----ARA--IPDVNEHSMLARVLVSSNQIGCLLGKGGSIIT 438
+SP Q+A+FR+ +RV AR+ P+ E + A++LV S+QIGC+LG+GG I+
Sbjct: 112 GEKVLSPAQDALFRIHDRVVADDARSEDSPE-GEKQVTAKLLVPSDQIGCILGRGGQIVQ 170
Query: 439 EMRKLSGAHIRILGKDKIPKCASENEEVIQITGEIEAVHDALLQITTRLKHH 490
+R +GA IRI+ +P CA ++E+IQI+GE+ V ALLQI +RL +
Sbjct: 171 NIRSETGAQIRIVKDRNMPLCALNSDELIQISGEVLIVKKALLQIASRLHEN 222
>AT5G53060.1 | Symbols: | RNA-binding KH domain-containing protein
| chr5:21515355-21518197 FORWARD LENGTH=652
Length = 652
Score = 187 bits (474), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 126/362 (34%), Positives = 190/362 (52%), Gaps = 30/362 (8%)
Query: 156 SAIRKALSLVFDRMVEGV----------EDTADGDEESGKASSFVFRLLILSNQVGCLLG 205
S ++AL V DR++E E+ D V RL++ VGCLLG
Sbjct: 133 SPAQEALFSVHDRILESEAQFGYGGPPPEEEEDYGGVRPGGGRVVTRLVVSRMHVGCLLG 192
Query: 206 KGGSVIKKMSAESGAQIRILPKD-KLPVCASASDEIVQITGGVEVVRKALQSVSLQLLEN 264
KGG +I++M E+ IRILP++ LP C S S+EIVQI G + V+ AL VS +L E+
Sbjct: 193 KGGKIIEQMRIETKTHIRILPRESNLPRCVSLSEEIVQIVGELNAVKNALAIVSSRLRES 252
Query: 265 PPRDHESLSTNFTGXXXXXXXX------------XXXXXXXFAAGPTDTSVFHSAPSLIS 312
RD +NF G F G + F S S +
Sbjct: 253 QHRDR----SNFQGRSHSPERSFAAAGDDYMPQLRRQSSDRFPRGNFRNNNFSSRQSNYA 308
Query: 313 KFHEGAIHGRMRPSQEMLTFRLLCPAEKVGNLIGKGGAIIKSVQQETASEIKVIDAVPDS 372
+ G S+E L F++LCPA+K+ ++G+ II +Q E +++V D V S
Sbjct: 309 EEAPAVPVGENVYSEE-LVFQILCPADKIVRVVGESQGIIDLLQNEIGVDVRVSDPVAGS 367
Query: 373 EDCVIVISGPAHPDDRISPVQEAVFRVQNRVARAIPDVNEHSMLARVLVSSNQIGCLLGK 432
++ +I IS PDD P QEA+ +Q ++ IPD ++ + R+LV S CL GK
Sbjct: 368 DEQIITISSEEAPDDPFFPAQEALLHIQTQIIDLIPD-KDNLITTRLLVPSRDSICLEGK 426
Query: 433 GGSIITEMRKLSGAHIRILGKDKIPKCASENEEVIQITGEIEAVHDALLQITTRLKHHFF 492
GS ++E+ +L+G ++IL +++IP+CAS N+ VIQITGEI A +AL+++T L+ H F
Sbjct: 427 AGS-VSEISRLTGTSVQILAREEIPRCASINDVVIQITGEIRAAREALVELTLLLRSHMF 485
Query: 493 RD 494
++
Sbjct: 486 KE 487
Score = 119 bits (297), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 77/217 (35%), Positives = 119/217 (54%), Gaps = 26/217 (11%)
Query: 331 TFRLLCPAEKVGNLIGKGGAIIKSVQQETASEIKVIDAVPDSEDCVIVISGPAH--PDDR 388
T+R+LC K G +IGK G IIKS++Q T + I V + VP + +I IS PD R
Sbjct: 69 TYRILCHDAKAGGVIGKSGTIIKSIRQHTGAWINVHELVPGDAERIIEISDNRRRDPDGR 128
Query: 389 I---SPVQEAVFRVQNRVARAI---------PDVNEH---------SMLARVLVSSNQIG 427
+ SP QEA+F V +R+ + P+ E ++ R++VS +G
Sbjct: 129 MPSFSPAQEALFSVHDRILESEAQFGYGGPPPEEEEDYGGVRPGGGRVVTRLVVSRMHVG 188
Query: 428 CLLGKGGSIITEMRKLSGAHIRILGKD-KIPKCASENEEVIQITGEIEAVHDALLQITTR 486
CLLGKGG II +MR + HIRIL ++ +P+C S +EE++QI GE+ AV +AL +++R
Sbjct: 189 CLLGKGGKIIEQMRIETKTHIRILPRESNLPRCVSLSEEIVQIVGELNAVKNALAIVSSR 248
Query: 487 LK--HHFFRDAYPSANYPSNPAFLDNLPPFLPYLGRR 521
L+ H R + ++ +F ++P L R+
Sbjct: 249 LRESQHRDRSNFQGRSHSPERSFAAAGDDYMPQLRRQ 285
Score = 59.3 bits (142), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 57/235 (24%), Positives = 99/235 (42%), Gaps = 35/235 (14%)
Query: 185 KASSFVFRLLILSNQVGCLLGKGGSVIKKMSAESGAQIRILPKDKLPVCASASDEIVQIT 244
K + RLL+ S CL GK GSV ++S +G ++IL ++++P CAS +D ++QIT
Sbjct: 405 KDNLITTRLLVPSRDSICLEGKAGSV-SEISRLTGTSVQILAREEIPRCASINDVVIQIT 463
Query: 245 GGVEVVRKALQSVSLQLL----------ENPPRDHESLSTN--FTGXXXXXXXXXXXXXX 292
G + R+AL ++L L E PP S ST G
Sbjct: 464 GEIRAAREALVELTLLLRSHMFKELSQKETPP---ASTSTTGPLEGVAGVMEVASSNNTI 520
Query: 293 XFAAGPTDTSV-FHSAPSLISKFHEG----AIHGRMRPSQEM--------------LTFR 333
GPT +++ +++ +F EG A G +E+ T
Sbjct: 521 QSREGPTSSNLNLQQVSTILPQFKEGFGSVAKAGESEHREEVPVTTSRMAVPLVTRSTLE 580
Query: 334 LLCPAEKVGNLIGKGGAIIKSVQQETASEIKVIDAVPDSEDCVIVISGPAHPDDR 388
++ P V L+ K + + + + + + +++ P+ +I ISG +R
Sbjct: 581 VVLPEAVVPKLVTKSRNKLAQISEWSGASVTIVEDRPEETQNIIRISGTPEQAER 635
>AT5G46190.1 | Symbols: | RNA-binding KH domain-containing protein
| chr5:18723435-18725834 REVERSE LENGTH=644
Length = 644
Score = 181 bits (460), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 164/542 (30%), Positives = 240/542 (44%), Gaps = 106/542 (19%)
Query: 192 RLLILSNQVGCLLGKGGSVIKKMSAESGAQIRILPKDKLP---VCASASDEIVQITGGVE 248
RLL+ S+Q ++GK GS+IK + + A ++++ KD CA D IV I+G E
Sbjct: 153 RLLVPSSQCSIVIGKSGSIIKNIRGRTRANVKVVSKDVSDPSHTCAMDFDNIVMISGETE 212
Query: 249 VVRKALQSVSLQLLENPPRDHESLSTNFTGXXXXXXXXXXXXXXXFAAGPTDTSVFHSA- 307
V+KAL +VS + + PR+ L T P+D S++ A
Sbjct: 213 SVKKALFAVSAIMYKVSPREQIPLDTTVQEVPASIII------------PSDLSIYPQAG 260
Query: 308 --PSLISKFHEGA-------------------------------IHGRMRPSQ-EMLTFR 333
PS S F GA +HG S+ E L +
Sbjct: 261 LYPSQDSIFQHGANVSSFIGTLPQGYGENAANPVPVFSASALPVVHGFGGSSRSEKLAIK 320
Query: 334 LLCPAEKVGNLIGKGGAIIKSVQQETASEIKVIDAVPD-SEDCVIVISGPAHPDDRISPV 392
++C + K+G +IGKGG IK ++Q + S I+V D+ + +DCVI ++ PDD S
Sbjct: 321 VICSSSKIGRVIGKGGLTIKGIRQASGSHIEVNDSRTNHDDDCVITVTATESPDDLKSMA 380
Query: 393 QEAVFRVQNRVARAIPDVNEHSMLARVLVSSNQIGCLLGKGGSIITEMRKLSGAHIRILG 452
EAV +Q + I D +E + ++LVSS IGC++GK GSII+E+RK + A I I
Sbjct: 381 VEAVLLLQEK----INDEDEDKVKMQLLVSSKVIGCIIGKSGSIISEIRKRTKADIHISK 436
Query: 453 KDKIPKCASENEEVIQITGEIEAVHDALLQITTRLKHHFFRDAYP-SANYPSNPAFLDNL 511
+ PKCA N+E+++I+GE+ V DAL+QI RL+ RD S N P PA +N
Sbjct: 437 GNNTPKCADPNDELVEISGEVSNVRDALIQIVLRLRDDVLRDRETGSRNQP--PARSENN 494
Query: 512 PPFLPYLGRRGISPPGMYSDLGPPPPHAGFPLDDRPPFMNNIHRSGIPPHIAERKPWGPQ 571
F G++ P + + P A + RP
Sbjct: 495 NFFSSSSSNTGLALPQSF--MSSVPQVASVDFNRRP------------------------ 528
Query: 572 GILEGGGHMGLPDFAGGPPRRILGFGG---GNQPIITHT------------SATXXXXXX 616
E G M + +GG I G+G GN +++ S T
Sbjct: 529 ---ETGSSMSMLPSSGG----IYGYGSFPVGNTSYGSNSSYSSNLYGGLPQSTTMEVRIP 581
Query: 617 XXXXXXIYGEDGECLRQILQISDAKIMITDPKPGAVETKIIISGTPEQTHAAQSLIQAFV 676
+ G G L I +IS A I I+D K +ISGT EQ A++L QAF+
Sbjct: 582 ANAVGKVMGRGGGNLDNIRRISGAMIEISDSKNSHGGRVALISGTSEQKRTAENLFQAFI 641
Query: 677 MS 678
MS
Sbjct: 642 MS 643
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 97/193 (50%), Gaps = 24/193 (12%)
Query: 329 MLTFRLLCPAEKVGNLIGKGGAIIKSVQQETASEIKVIDAVPDSEDCVIVISGPAHPDDR 388
++ +R+LCP+ +G++IGK G +I ++QET + IKV+D P + VI I
Sbjct: 43 VVVYRILCPSGVMGSVIGKSGKVINLIRQETRARIKVVDPFPGCSERVITIFCSVSEKKD 102
Query: 389 ISPV--------------QEAVFRVQNRVARAIPDVNEHSML-------ARVLVSSNQIG 427
I + Q A+ +V + + ++ E++ + R+LV S+Q
Sbjct: 103 IVDIEYSELDYSVPLCSAQAALLKVHDAIVASLATAAENTKIDRDDFRECRLLVPSSQCS 162
Query: 428 CLLGKGGSIITEMRKLSGAHIRILGKDKIP---KCASENEEVIQITGEIEAVHDALLQIT 484
++GK GSII +R + A+++++ KD CA + + ++ I+GE E+V AL ++
Sbjct: 163 IVIGKSGSIIKNIRGRTRANVKVVSKDVSDPSHTCAMDFDNIVMISGETESVKKALFAVS 222
Query: 485 TRLKHHFFRDAYP 497
+ R+ P
Sbjct: 223 AIMYKVSPREQIP 235
Score = 65.9 bits (159), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 58/102 (56%), Gaps = 5/102 (4%)
Query: 174 EDTADGDEESGKASSFVFRLLILSNQVGCLLGKGGSVIKKMSAESGAQIRILPKDKLPVC 233
E D DE+ K +LL+ S +GC++GK GS+I ++ + A I I + P C
Sbjct: 389 EKINDEDEDKVK-----MQLLVSSKVIGCIIGKSGSIISEIRKRTKADIHISKGNNTPKC 443
Query: 234 ASASDEIVQITGGVEVVRKALQSVSLQLLENPPRDHESLSTN 275
A +DE+V+I+G V VR AL + L+L ++ RD E+ S N
Sbjct: 444 ADPNDELVEISGEVSNVRDALIQIVLRLRDDVLRDRETGSRN 485
>AT1G14170.3 | Symbols: | RNA-binding KH domain-containing protein
| chr1:4843463-4845253 REVERSE LENGTH=479
Length = 479
Score = 172 bits (435), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 117/312 (37%), Positives = 182/312 (58%), Gaps = 24/312 (7%)
Query: 184 GKASSFVFRLLILSNQVGCLLGKGGSVIKKMSAESGAQIRILPKDKLPVCA--SASDEIV 241
G+ + R+L+ S+Q+GC++GKGG VI+ + ++ AQIR++ KD LP CA + DE++
Sbjct: 141 GEKQTVTVRMLVPSDQIGCVIGKGGQVIQNLRNDTNAQIRVI-KDHLPACALTLSHDELL 199
Query: 242 QITGGVEVVRKALQSVSLQLLENPPRDHESLSTNFTGXXXXXXXXXXXXXXXFAAGPTDT 301
I G VVR+AL V+ L +NP R L ++ +
Sbjct: 200 LIIGEPLVVREALYQVASLLHDNPSRFQHLLLSSSSSSMHQPG----------------- 242
Query: 302 SVFHSAPSLISKFHEGAIHGRMRPSQEMLTFRLLCPAEKVGNLIGKGGAIIKSVQQETAS 361
++ SA +L S A+ + ++E +CPAE VG +IGKGG I ++QET +
Sbjct: 243 AMLMSA-ALTSSHRNYAVRRDIADAREFCVC-FICPAENVGGVIGKGGGFINQIRQETGA 300
Query: 362 EIKVIDAVPDSEDCVIVISGPAHPDDRISPVQEAVFRVQNRVARAI-PDVNEHSMLARVL 420
I+V + D +DC+I IS +D+ SP A R+Q R + + D N+ ++ R+L
Sbjct: 301 TIRVNTSETDDDDCIIFISSKEFYEDQ-SPAVNAAIRLQQRCSEKVGKDANDLAISTRLL 359
Query: 421 VSSNQIGCLLGKGGSIITEMRKLSGAHIRILGKDKIPKCASENEEVIQITGEIEAVHDAL 480
VSS+QIGCL+GKGG++I+EMR ++ A+IRIL K+ +PK A E+EE++QITG +A AL
Sbjct: 360 VSSSQIGCLIGKGGAVISEMRSVTRANIRILQKEDVPKIAREDEEMVQITGSPDAAMKAL 419
Query: 481 LQITTRLKHHFF 492
Q+ RL+ + F
Sbjct: 420 TQVILRLRANSF 431
Score = 96.7 bits (239), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 99/181 (54%), Gaps = 20/181 (11%)
Query: 326 SQEMLTFRLLCPAEKVGNLIGKGGAIIKSVQQETASEIKVIDAVPDSEDCVIVISGPAHP 385
+ E +R LCP +K G++IGKGG I K ++ ET S +++ +A+P E+ V+ +
Sbjct: 40 ASEDTVYRYLCPVKKTGSIIGKGGEIAKQIRSETKSNMRINEALPGCEERVVTMYSTNEE 99
Query: 386 -----DD--RISPVQEAVFRVQNRVARAIPDV----------NEHSMLARVLVSSNQIGC 428
DD + P +A+F+V + V + ++ R+LV S+QIGC
Sbjct: 100 LNHFGDDGELVCPALDALFKVHDMVVADADQDDGTDDDNDLGEKQTVTVRMLVPSDQIGC 159
Query: 429 LLGKGGSIITEMRKLSGAHIRILGKDKIPKCA--SENEEVIQITGEIEAVHDALLQITTR 486
++GKGG +I +R + A IR++ KD +P CA ++E++ I GE V +AL Q+ +
Sbjct: 160 VIGKGGQVIQNLRNDTNAQIRVI-KDHLPACALTLSHDELLLIIGEPLVVREALYQVASL 218
Query: 487 L 487
L
Sbjct: 219 L 219
>AT1G14170.2 | Symbols: | RNA-binding KH domain-containing protein
| chr1:4843463-4845253 REVERSE LENGTH=446
Length = 446
Score = 172 bits (435), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 117/312 (37%), Positives = 182/312 (58%), Gaps = 24/312 (7%)
Query: 184 GKASSFVFRLLILSNQVGCLLGKGGSVIKKMSAESGAQIRILPKDKLPVCA--SASDEIV 241
G+ + R+L+ S+Q+GC++GKGG VI+ + ++ AQIR++ KD LP CA + DE++
Sbjct: 108 GEKQTVTVRMLVPSDQIGCVIGKGGQVIQNLRNDTNAQIRVI-KDHLPACALTLSHDELL 166
Query: 242 QITGGVEVVRKALQSVSLQLLENPPRDHESLSTNFTGXXXXXXXXXXXXXXXFAAGPTDT 301
I G VVR+AL V+ L +NP R L ++ +
Sbjct: 167 LIIGEPLVVREALYQVASLLHDNPSRFQHLLLSSSSSSMHQPG----------------- 209
Query: 302 SVFHSAPSLISKFHEGAIHGRMRPSQEMLTFRLLCPAEKVGNLIGKGGAIIKSVQQETAS 361
++ SA +L S A+ + ++E +CPAE VG +IGKGG I ++QET +
Sbjct: 210 AMLMSA-ALTSSHRNYAVRRDIADAREFCVC-FICPAENVGGVIGKGGGFINQIRQETGA 267
Query: 362 EIKVIDAVPDSEDCVIVISGPAHPDDRISPVQEAVFRVQNRVARAI-PDVNEHSMLARVL 420
I+V + D +DC+I IS +D+ SP A R+Q R + + D N+ ++ R+L
Sbjct: 268 TIRVNTSETDDDDCIIFISSKEFYEDQ-SPAVNAAIRLQQRCSEKVGKDANDLAISTRLL 326
Query: 421 VSSNQIGCLLGKGGSIITEMRKLSGAHIRILGKDKIPKCASENEEVIQITGEIEAVHDAL 480
VSS+QIGCL+GKGG++I+EMR ++ A+IRIL K+ +PK A E+EE++QITG +A AL
Sbjct: 327 VSSSQIGCLIGKGGAVISEMRSVTRANIRILQKEDVPKIAREDEEMVQITGSPDAAMKAL 386
Query: 481 LQITTRLKHHFF 492
Q+ RL+ + F
Sbjct: 387 TQVILRLRANSF 398
Score = 96.3 bits (238), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 97/175 (55%), Gaps = 20/175 (11%)
Query: 332 FRLLCPAEKVGNLIGKGGAIIKSVQQETASEIKVIDAVPDSEDCVIVISGPAHP-----D 386
+R LCP +K G++IGKGG I K ++ ET S +++ +A+P E+ V+ + D
Sbjct: 13 YRYLCPVKKTGSIIGKGGEIAKQIRSETKSNMRINEALPGCEERVVTMYSTNEELNHFGD 72
Query: 387 D--RISPVQEAVFRVQNRVARAIPDV----------NEHSMLARVLVSSNQIGCLLGKGG 434
D + P +A+F+V + V + ++ R+LV S+QIGC++GKGG
Sbjct: 73 DGELVCPALDALFKVHDMVVADADQDDGTDDDNDLGEKQTVTVRMLVPSDQIGCVIGKGG 132
Query: 435 SIITEMRKLSGAHIRILGKDKIPKCA--SENEEVIQITGEIEAVHDALLQITTRL 487
+I +R + A IR++ KD +P CA ++E++ I GE V +AL Q+ + L
Sbjct: 133 QVIQNLRNDTNAQIRVI-KDHLPACALTLSHDELLLIIGEPLVVREALYQVASLL 186
>AT1G14170.1 | Symbols: | RNA-binding KH domain-containing protein
| chr1:4843463-4845253 REVERSE LENGTH=454
Length = 454
Score = 171 bits (434), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 117/312 (37%), Positives = 182/312 (58%), Gaps = 24/312 (7%)
Query: 184 GKASSFVFRLLILSNQVGCLLGKGGSVIKKMSAESGAQIRILPKDKLPVCA--SASDEIV 241
G+ + R+L+ S+Q+GC++GKGG VI+ + ++ AQIR++ KD LP CA + DE++
Sbjct: 116 GEKQTVTVRMLVPSDQIGCVIGKGGQVIQNLRNDTNAQIRVI-KDHLPACALTLSHDELL 174
Query: 242 QITGGVEVVRKALQSVSLQLLENPPRDHESLSTNFTGXXXXXXXXXXXXXXXFAAGPTDT 301
I G VVR+AL V+ L +NP R L ++ +
Sbjct: 175 LIIGEPLVVREALYQVASLLHDNPSRFQHLLLSSSSSSMHQPG----------------- 217
Query: 302 SVFHSAPSLISKFHEGAIHGRMRPSQEMLTFRLLCPAEKVGNLIGKGGAIIKSVQQETAS 361
++ SA +L S A+ + ++E +CPAE VG +IGKGG I ++QET +
Sbjct: 218 AMLMSA-ALTSSHRNYAVRRDIADAREFCVC-FICPAENVGGVIGKGGGFINQIRQETGA 275
Query: 362 EIKVIDAVPDSEDCVIVISGPAHPDDRISPVQEAVFRVQNRVARAI-PDVNEHSMLARVL 420
I+V + D +DC+I IS +D+ SP A R+Q R + + D N+ ++ R+L
Sbjct: 276 TIRVNTSETDDDDCIIFISSKEFYEDQ-SPAVNAAIRLQQRCSEKVGKDANDLAISTRLL 334
Query: 421 VSSNQIGCLLGKGGSIITEMRKLSGAHIRILGKDKIPKCASENEEVIQITGEIEAVHDAL 480
VSS+QIGCL+GKGG++I+EMR ++ A+IRIL K+ +PK A E+EE++QITG +A AL
Sbjct: 335 VSSSQIGCLIGKGGAVISEMRSVTRANIRILQKEDVPKIAREDEEMVQITGSPDAAMKAL 394
Query: 481 LQITTRLKHHFF 492
Q+ RL+ + F
Sbjct: 395 TQVILRLRANSF 406
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 102/188 (54%), Gaps = 20/188 (10%)
Query: 319 IHGRMRPSQEMLTFRLLCPAEKVGNLIGKGGAIIKSVQQETASEIKVIDAVPDSEDCVIV 378
IH + + E +R LCP +K G++IGKGG I K ++ ET S +++ +A+P E+ V+
Sbjct: 8 IHDQNVIASEDTVYRYLCPVKKTGSIIGKGGEIAKQIRSETKSNMRINEALPGCEERVVT 67
Query: 379 ISGPAHP-----DD--RISPVQEAVFRVQNRVARAIPDV----------NEHSMLARVLV 421
+ DD + P +A+F+V + V + ++ R+LV
Sbjct: 68 MYSTNEELNHFGDDGELVCPALDALFKVHDMVVADADQDDGTDDDNDLGEKQTVTVRMLV 127
Query: 422 SSNQIGCLLGKGGSIITEMRKLSGAHIRILGKDKIPKCA--SENEEVIQITGEIEAVHDA 479
S+QIGC++GKGG +I +R + A IR++ KD +P CA ++E++ I GE V +A
Sbjct: 128 PSDQIGCVIGKGGQVIQNLRNDTNAQIRVI-KDHLPACALTLSHDELLLIIGEPLVVREA 186
Query: 480 LLQITTRL 487
L Q+ + L
Sbjct: 187 LYQVASLL 194
>AT5G64390.1 | Symbols: HEN4 | RNA-binding KH domain-containing
protein | chr5:25743442-25747380 FORWARD LENGTH=857
Length = 857
Score = 169 bits (429), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 125/402 (31%), Positives = 198/402 (49%), Gaps = 61/402 (15%)
Query: 330 LTFRLLCPAEKVGNLIGKGGAIIKSVQQETASEIKVIDAVPDSEDCVIVISGPAHPDDRI 389
+ F++LC E G +IG GG +++ + ET + I V + + D E+ +I ++ +P+ +
Sbjct: 452 VVFKILCSTENAGGVIGTGGKVVRMLHSETGAFINVGNTLDDCEERLIAVTASENPECQS 511
Query: 390 SPVQEAVFRVQNRV-----ARAIPDVNEHSMLARVLVSSNQIGCLLGKGGSIITEMRKLS 444
SP Q+A+ + +R+ + + + S+ AR++V ++QIGC+LGKGG I++EMRK +
Sbjct: 512 SPAQKAIMLIFSRLFELATNKILDNGPRSSITARLVVPTSQIGCVLGKGGVIVSEMRKTT 571
Query: 445 GAHIRILGKDKIPKCASENEEVIQITGEIEAVHDALLQITTRLKHHFFRDAYP------- 497
GA I+IL ++ PKC SEN++V+QITGE V +A+ IT+RL+ F ++
Sbjct: 572 GAAIQILKVEQNPKCISENDQVVQITGEFPNVREAIFHITSRLRDSVFSNSMKNSLAKSS 631
Query: 498 --------------------SANYPSNPA-------------FLDNLPPFLPYLGRRGIS 524
S SNPA FL + Y G
Sbjct: 632 SALTTERFYDRQSDNPLSIGSHQSVSNPATNSSSLHRRSEDSFLSGSHSSVNYSRSVGTD 691
Query: 525 PPGMYSDLGPP--PPHAGFPLDDRPPFM-----NNIHRSGIPPHI-AERKPWGPQGILEG 576
P D P P AG+ + F N+ H + P + A P P+G+ +
Sbjct: 692 PYIRPEDPFPDRFNPSAGYSHNFGRRFTMDHSDNSHHLTEAPSRLWASPPPAAPRGLSDA 751
Query: 577 GGHMGLPDFAGGPPRRILGFGGGNQPIITHTSATXXXXXXXXXXXXIYGEDGECLRQILQ 636
G GL G +LG G I+T+T T +YGE G L Q+ Q
Sbjct: 752 SG--GLSSARAG---HVLG-SGHKSAIVTNT--TVEIRVPANAMSFVYGEQGYNLEQLRQ 803
Query: 637 ISDAKIMITDPKPGAVETKIIISGTPEQTHAAQSLIQAFVMS 678
IS A+++I +P G + I+ISGTP+QT AAQ+L+ AF+++
Sbjct: 804 ISGARVIIHEPPLGTSDRIIVISGTPDQTQAAQNLLHAFILT 845
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 91/179 (50%), Gaps = 25/179 (13%)
Query: 332 FRLLCPAEKVGNLIGKGGAIIKSVQQETASEIKVIDAVPDSEDCVIVISGPAHPDDRI-- 389
FRLLCP VG +IGK G +IK +QQ T ++I+V + S D VI I A R+
Sbjct: 49 FRLLCPLSHVGAVIGKSGNVIKQLQQSTGAKIRVEEPPSGSPDRVITIIAQADSKSRVKL 108
Query: 390 -------------------SPVQEAVFRVQNRVARAIPDVNEHSMLARVLVSSNQIGCLL 430
S Q A+ +V +A + + +++ R+L S+ G ++
Sbjct: 109 GANNNGNAEGEKKEEEVEVSKAQGALIKVFELLA---AEADSDTVVCRLLTESSHAGAVI 165
Query: 431 GKGGSIITEMRKLSGAHIRILGKDKIPKCASENEEVIQITGEIEAVHDALLQITTRLKH 489
GKGG ++ +RK +G I I + +P CA ++E++++ G AV AL+ I+ L++
Sbjct: 166 GKGGQMVGSIRKETGCKISIR-IENLPICADTDDEMVEVEGNAIAVKKALVSISRCLQN 223
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 67/106 (63%), Gaps = 3/106 (2%)
Query: 156 SAIRKALSLVFDRMVEGVEDTADGDEESGKASSFVFRLLILSNQVGCLLGKGGSVIKKMS 215
S +KA+ L+F R+ E + ++G SS RL++ ++Q+GC+LGKGG ++ +M
Sbjct: 512 SPAQKAIMLIFSRLFELATNKI---LDNGPRSSITARLVVPTSQIGCVLGKGGVIVSEMR 568
Query: 216 AESGAQIRILPKDKLPVCASASDEIVQITGGVEVVRKALQSVSLQL 261
+GA I+IL ++ P C S +D++VQITG VR+A+ ++ +L
Sbjct: 569 KTTGAAIQILKVEQNPKCISENDQVVQITGEFPNVREAIFHITSRL 614
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Query: 186 ASSFVFRLLILSNQVGCLLGKGGSVIKKMSAESGAQIRILPKDKLPVCASASDEIVQITG 245
+ + V RLL S+ G ++GKGG ++ + E+G +I I ++ LP+CA DE+V++ G
Sbjct: 147 SDTVVCRLLTESSHAGAVIGKGGQMVGSIRKETGCKISIRIEN-LPICADTDDEMVEVEG 205
Query: 246 GVEVVRKALQSVSLQLLEN 264
V+KAL S+S + L+N
Sbjct: 206 NAIAVKKALVSIS-RCLQN 223
>AT5G64390.3 | Symbols: HEN4 | RNA-binding KH domain-containing
protein | chr5:25743442-25747380 FORWARD LENGTH=866
Length = 866
Score = 168 bits (426), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 125/409 (30%), Positives = 199/409 (48%), Gaps = 66/409 (16%)
Query: 330 LTFRLLCPAEKVGNLIGKGGAIIKSVQQETASEIKVIDAVPDSEDCVIVISGPAHPDDRI 389
+ F++LC E G +IG GG +++ + ET + I V + + D E+ +I ++ +P+ +
Sbjct: 452 VVFKILCSTENAGGVIGTGGKVVRMLHSETGAFINVGNTLDDCEERLIAVTASENPECQS 511
Query: 390 SPVQEAVFRVQNRV-----ARAIPDVNEHSMLARVLVSSNQIGCLLGKGGSIITEMRKLS 444
SP Q+A+ + +R+ + + + S+ AR++V ++QIGC+LGKGG I++EMRK +
Sbjct: 512 SPAQKAIMLIFSRLFELATNKILDNGPRSSITARLVVPTSQIGCVLGKGGVIVSEMRKTT 571
Query: 445 GAHIRILGKDKIPKCASENEEVIQITGEIEAVHDALLQITTRLKHHFFRDAYP------- 497
GA I+IL ++ PKC SEN++V+QITGE V +A+ IT+RL+ F ++
Sbjct: 572 GAAIQILKVEQNPKCISENDQVVQITGEFPNVREAIFHITSRLRDSVFSNSMKNSLAKSS 631
Query: 498 --------------------SANYPSNPA-------------FLDNLPPFLPYLGRRGIS 524
S SNPA FL + Y G
Sbjct: 632 SALTTERFYDRQSDNPLSIGSHQSVSNPATNSSSLHRRSEDSFLSGSHSSVNYSRSVGTD 691
Query: 525 PPGMYSDLGPP--PPHAGFPLDDRPPFM-----NNIHRSGIPPHI-AERKPWGPQGILEG 576
P D P P AG+ + F N+ H + P + A P P+G+ +
Sbjct: 692 PYIRPEDPFPDRFNPSAGYSHNFGRRFTMDHSDNSHHLTEAPSRLWASPPPAAPRGLSDA 751
Query: 577 GGHMGLPDFAGGPPRRILG-------FGGGNQPIITHTSATXXXXXXXXXXXXIYGEDGE 629
G GL G +LG F G++ I T+ T +YGE G
Sbjct: 752 SG--GLSSARAG---HVLGSLHARLVFSSGHKSAIV-TNTTVEIRVPANAMSFVYGEQGY 805
Query: 630 CLRQILQISDAKIMITDPKPGAVETKIIISGTPEQTHAAQSLIQAFVMS 678
L Q+ QIS A+++I +P G + I+ISGTP+QT AAQ+L+ AF+++
Sbjct: 806 NLEQLRQISGARVIIHEPPLGTSDRIIVISGTPDQTQAAQNLLHAFILT 854
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 91/179 (50%), Gaps = 25/179 (13%)
Query: 332 FRLLCPAEKVGNLIGKGGAIIKSVQQETASEIKVIDAVPDSEDCVIVISGPAHPDDRI-- 389
FRLLCP VG +IGK G +IK +QQ T ++I+V + S D VI I A R+
Sbjct: 49 FRLLCPLSHVGAVIGKSGNVIKQLQQSTGAKIRVEEPPSGSPDRVITIIAQADSKSRVKL 108
Query: 390 -------------------SPVQEAVFRVQNRVARAIPDVNEHSMLARVLVSSNQIGCLL 430
S Q A+ +V +A + + +++ R+L S+ G ++
Sbjct: 109 GANNNGNAEGEKKEEEVEVSKAQGALIKVFELLA---AEADSDTVVCRLLTESSHAGAVI 165
Query: 431 GKGGSIITEMRKLSGAHIRILGKDKIPKCASENEEVIQITGEIEAVHDALLQITTRLKH 489
GKGG ++ +RK +G I I + +P CA ++E++++ G AV AL+ I+ L++
Sbjct: 166 GKGGQMVGSIRKETGCKISIR-IENLPICADTDDEMVEVEGNAIAVKKALVSISRCLQN 223
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 67/106 (63%), Gaps = 3/106 (2%)
Query: 156 SAIRKALSLVFDRMVEGVEDTADGDEESGKASSFVFRLLILSNQVGCLLGKGGSVIKKMS 215
S +KA+ L+F R+ E + ++G SS RL++ ++Q+GC+LGKGG ++ +M
Sbjct: 512 SPAQKAIMLIFSRLFELATNKI---LDNGPRSSITARLVVPTSQIGCVLGKGGVIVSEMR 568
Query: 216 AESGAQIRILPKDKLPVCASASDEIVQITGGVEVVRKALQSVSLQL 261
+GA I+IL ++ P C S +D++VQITG VR+A+ ++ +L
Sbjct: 569 KTTGAAIQILKVEQNPKCISENDQVVQITGEFPNVREAIFHITSRL 614
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Query: 186 ASSFVFRLLILSNQVGCLLGKGGSVIKKMSAESGAQIRILPKDKLPVCASASDEIVQITG 245
+ + V RLL S+ G ++GKGG ++ + E+G +I I ++ LP+CA DE+V++ G
Sbjct: 147 SDTVVCRLLTESSHAGAVIGKGGQMVGSIRKETGCKISIRIEN-LPICADTDDEMVEVEG 205
Query: 246 GVEVVRKALQSVSLQLLEN 264
V+KAL S+S + L+N
Sbjct: 206 NAIAVKKALVSIS-RCLQN 223
>AT4G18375.2 | Symbols: | RNA-binding KH domain-containing protein
| chr4:10152825-10155125 FORWARD LENGTH=606
Length = 606
Score = 141 bits (356), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 158/558 (28%), Positives = 243/558 (43%), Gaps = 104/558 (18%)
Query: 161 ALSLVFDRMVEGVEDT---ADGDEESGKASSFVFRLLILSNQVGCLLGKGGSVIKKMSAE 217
AL V+D +V E+ + D + K RLL+ +Q L+GK G IK++
Sbjct: 112 ALLKVYDAIVASDEENNTKTNVDRDDNKEC----RLLVPFSQSSSLIGKAGENIKRIRRR 167
Query: 218 SGAQIRILPKDKLP---VCASASDEIVQITGGVEVVRKALQSVSLQLL-----ENPPRDH 269
+ A ++++ KD VCA D +V I+G E V++AL +VS + EN P D
Sbjct: 168 TRASVKVVSKDVSDPSHVCAMEYDNVVVISGEPESVKQALFAVSAIMYKINPRENIPLDS 227
Query: 270 ES---------LSTNFTGXXXXXXXXXXXXXXXFAAGPTDTSVFHS-APSLISKFHEGA- 318
S + ++ + G S F++ + S + E A
Sbjct: 228 TSQDVPAASVIVPSDLSNSVYPQTGFYSNQDHILQQGAGVPSYFNALSVSDFQGYAETAA 287
Query: 319 ------------IHGRMRPSQ-EMLTFRLLCPAEKVGNLIGKGGAIIKSVQQETASEIKV 365
HG S+ E L F++LCP + +IGKGG+ IK +++ + S I+V
Sbjct: 288 NPVPVFASSLPVTHGFGGSSRSEELVFKVLCPLCNIMRVIGKGGSTIKRIREASGSCIEV 347
Query: 366 IDAVPDSED--CVIVISGPAHPDDRISPVQEAVFRVQNRVARAIPDVNEHSMLARVLVSS 423
D+ D CVI+++ PDD S EAV +Q I D + ++ ++LVSS
Sbjct: 348 NDSRTKCGDDECVIIVTATESPDDMKSMAVEAVLLLQ----EYINDEDAENVKMQLLVSS 403
Query: 424 NQIGCLLGKGGSIITEMRKLSGAHIRILGKDKIPKCASENEEVIQITGEIEAVHDALLQI 483
IGC++GK GS+I E+RK + A+I I K +++++++GE+ +V DAL+QI
Sbjct: 404 KVIGCVIGKSGSVINEIRKRTNANICISKGKK--------DDLVEVSGEVSSVRDALIQI 455
Query: 484 TTRLKHHFFRDAYPSANYPSNPAFLDNLPPFLPYLGRRGISPPGMYSDLGPPPPHAG--- 540
RL+ D A PA DN FL G + P S + G
Sbjct: 456 VLRLREDVLGDKDSVATRKP-PARTDNC-SFLSGSSNAGYTLPSFMSSMASTSGFHGYGS 513
Query: 541 FPLDDRPPFMNNIHRSGIPPHIAERKPWGPQGILEGGGHMGLPDFAGGPPRRILGFGGGN 600
FP D N + +G P+ R P LE + +P A +++G GGGN
Sbjct: 514 FPAGD-----NVLGSTG--PYSYGRLP--SSSALE----ILIPAHAMS---KVMGKGGGN 557
Query: 601 QPIITHTSATXXXXXXXXXXXXIYGEDGECLRQILQISDAKIMITDPKPGAVETKIIISG 660
L I +IS A I I+ K + ++SG
Sbjct: 558 ------------------------------LENIRRISGAMIEISASKTSHGDHIALLSG 587
Query: 661 TPEQTHAAQSLIQAFVMS 678
T EQ A++L+QAFVMS
Sbjct: 588 TLEQMRCAENLVQAFVMS 605
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 88/377 (23%), Positives = 156/377 (41%), Gaps = 55/377 (14%)
Query: 328 EMLTFRLLCPAEKVGNLIGKGGAIIKSVQQETASEIKVIDAVPDSEDCVIVISGPAH--- 384
E++ +R+LCP + VG +IGK G +I +++ T ++IKV D + VI I
Sbjct: 34 ELVVYRILCPIDVVGGVIGKSGKVINAIRHNTKAKIKVFDQLHGCSQRVITIYCSVKEKQ 93
Query: 385 --------PDDRISPVQEAVFRVQNRVARAIPDVNEHSML-------ARVLVSSNQIGCL 429
++ + Q+A+ +V + + + + N + + R+LV +Q L
Sbjct: 94 EEIGFTKSENEPLCCAQDALLKVYDAIVASDEENNTKTNVDRDDNKECRLLVPFSQSSSL 153
Query: 430 LGKGGSIITEMRKLSGAHIRILGKD-KIPK--CASENEEVIQITGEIEAVHDALLQITTR 486
+GK G I +R+ + A ++++ KD P CA E + V+ I+GE E+V AL ++
Sbjct: 154 IGKAGENIKRIRRRTRASVKVVSKDVSDPSHVCAMEYDNVVVISGEPESVKQALFAVSA- 212
Query: 487 LKHHFFRDAYPSANYPSNPAFLDNLPPFLPYLGRRGISPPGMYSDLGPPPPHAGFPLDDR 546
P N P LD+ +P I P + + + P GF
Sbjct: 213 ----IMYKINPRENIP-----LDSTSQDVP--AASVIVPSDLSNSV---YPQTGF----- 253
Query: 547 PPFMNNIH----RSGIPPHIAERKPWGPQGILEGGGHMGLPDFAGGPPRRILGFGGGNQP 602
+ N H +G+P + QG E + +P FA P GFGG ++
Sbjct: 254 --YSNQDHILQQGAGVPSYFNALSVSDFQGYAETAAN-PVPVFASSLP-VTHGFGGSSRS 309
Query: 603 IITHTSATXXXXXXXXXXXXIYGEDGECLRQILQISDAKIMITD--PKPGAVETKIIISG 660
+ G+ G +++I + S + I + D K G E II++
Sbjct: 310 ----EELVFKVLCPLCNIMRVIGKGGSTIKRIREASGSCIEVNDSRTKCGDDECVIIVTA 365
Query: 661 TPEQTHAAQSLIQAFVM 677
T ++A ++
Sbjct: 366 TESPDDMKSMAVEAVLL 382
>AT5G64390.2 | Symbols: HEN4 | RNA-binding KH domain-containing
protein | chr5:25743442-25746742 FORWARD LENGTH=824
Length = 824
Score = 132 bits (331), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 66/183 (36%), Positives = 116/183 (63%), Gaps = 5/183 (2%)
Query: 330 LTFRLLCPAEKVGNLIGKGGAIIKSVQQETASEIKVIDAVPDSEDCVIVISGPAHPDDRI 389
+ F++LC E G +IG GG +++ + ET + I V + + D E+ +I ++ +P+ +
Sbjct: 452 VVFKILCSTENAGGVIGTGGKVVRMLHSETGAFINVGNTLDDCEERLIAVTASENPECQS 511
Query: 390 SPVQEAVFRVQNRV-----ARAIPDVNEHSMLARVLVSSNQIGCLLGKGGSIITEMRKLS 444
SP Q+A+ + +R+ + + + S+ AR++V ++QIGC+LGKGG I++EMRK +
Sbjct: 512 SPAQKAIMLIFSRLFELATNKILDNGPRSSITARLVVPTSQIGCVLGKGGVIVSEMRKTT 571
Query: 445 GAHIRILGKDKIPKCASENEEVIQITGEIEAVHDALLQITTRLKHHFFRDAYPSANYPSN 504
GA I+IL ++ PKC SEN++V+QITGE V +A+ IT+RL+ F ++ ++ S+
Sbjct: 572 GAAIQILKVEQNPKCISENDQVVQITGEFPNVREAIFHITSRLRDSVFSNSMKNSLAKSS 631
Query: 505 PAF 507
A
Sbjct: 632 SAL 634
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 91/179 (50%), Gaps = 25/179 (13%)
Query: 332 FRLLCPAEKVGNLIGKGGAIIKSVQQETASEIKVIDAVPDSEDCVIVISGPAHPDDRI-- 389
FRLLCP VG +IGK G +IK +QQ T ++I+V + S D VI I A R+
Sbjct: 49 FRLLCPLSHVGAVIGKSGNVIKQLQQSTGAKIRVEEPPSGSPDRVITIIAQADSKSRVKL 108
Query: 390 -------------------SPVQEAVFRVQNRVARAIPDVNEHSMLARVLVSSNQIGCLL 430
S Q A+ +V +A + + +++ R+L S+ G ++
Sbjct: 109 GANNNGNAEGEKKEEEVEVSKAQGALIKVFELLA---AEADSDTVVCRLLTESSHAGAVI 165
Query: 431 GKGGSIITEMRKLSGAHIRILGKDKIPKCASENEEVIQITGEIEAVHDALLQITTRLKH 489
GKGG ++ +RK +G I I + +P CA ++E++++ G AV AL+ I+ L++
Sbjct: 166 GKGGQMVGSIRKETGCKISIR-IENLPICADTDDEMVEVEGNAIAVKKALVSISRCLQN 223
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 69/109 (63%), Gaps = 3/109 (2%)
Query: 156 SAIRKALSLVFDRMVEGVEDTADGDEESGKASSFVFRLLILSNQVGCLLGKGGSVIKKMS 215
S +KA+ L+F R+ E + ++G SS RL++ ++Q+GC+LGKGG ++ +M
Sbjct: 512 SPAQKAIMLIFSRLFELATNKI---LDNGPRSSITARLVVPTSQIGCVLGKGGVIVSEMR 568
Query: 216 AESGAQIRILPKDKLPVCASASDEIVQITGGVEVVRKALQSVSLQLLEN 264
+GA I+IL ++ P C S +D++VQITG VR+A+ ++ +L ++
Sbjct: 569 KTTGAAIQILKVEQNPKCISENDQVVQITGEFPNVREAIFHITSRLRDS 617
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Query: 186 ASSFVFRLLILSNQVGCLLGKGGSVIKKMSAESGAQIRILPKDKLPVCASASDEIVQITG 245
+ + V RLL S+ G ++GKGG ++ + E+G +I I ++ LP+CA DE+V++ G
Sbjct: 147 SDTVVCRLLTESSHAGAVIGKGGQMVGSIRKETGCKISIRIEN-LPICADTDDEMVEVEG 205
Query: 246 GVEVVRKALQSVSLQLLEN 264
V+KAL S+S + L+N
Sbjct: 206 NAIAVKKALVSIS-RCLQN 223
>AT4G18375.1 | Symbols: | RNA-binding KH domain-containing protein
| chr4:10152825-10154836 FORWARD LENGTH=532
Length = 532
Score = 127 bits (318), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 120/418 (28%), Positives = 190/418 (45%), Gaps = 55/418 (13%)
Query: 161 ALSLVFDRMVEGVEDT---ADGDEESGKASSFVFRLLILSNQVGCLLGKGGSVIKKMSAE 217
AL V+D +V E+ + D + K RLL+ +Q L+GK G IK++
Sbjct: 112 ALLKVYDAIVASDEENNTKTNVDRDDNKEC----RLLVPFSQSSSLIGKAGENIKRIRRR 167
Query: 218 SGAQIRILPKDKLP---VCASASDEIVQITGGVEVVRKALQSVSLQLL-----ENPPRDH 269
+ A ++++ KD VCA D +V I+G E V++AL +VS + EN P D
Sbjct: 168 TRASVKVVSKDVSDPSHVCAMEYDNVVVISGEPESVKQALFAVSAIMYKINPRENIPLDS 227
Query: 270 ES---------LSTNFTGXXXXXXXXXXXXXXXFAAGPTDTSVFHS-APSLISKFHEGA- 318
S + ++ + G S F++ + S + E A
Sbjct: 228 TSQDVPAASVIVPSDLSNSVYPQTGFYSNQDHILQQGAGVPSYFNALSVSDFQGYAETAA 287
Query: 319 ------------IHGRMRPSQ-EMLTFRLLCPAEKVGNLIGKGGAIIKSVQQETASEIKV 365
HG S+ E L F++LCP + +IGKGG+ IK +++ + S I+V
Sbjct: 288 NPVPVFASSLPVTHGFGGSSRSEELVFKVLCPLCNIMRVIGKGGSTIKRIREASGSCIEV 347
Query: 366 IDAVPDSED--CVIVISGPAHPDDRISPVQEAVFRVQNRVARAIPDVNEHSMLARVLVSS 423
D+ D CVI+++ PDD S EAV +Q I D + ++ ++LVSS
Sbjct: 348 NDSRTKCGDDECVIIVTATESPDDMKSMAVEAVLLLQ----EYINDEDAENVKMQLLVSS 403
Query: 424 NQIGCLLGKGGSIITEMRKLSGAHIRILGKDKIPKCASENEEVIQITGEIEAVHDALLQI 483
IGC++GK GS+I E+RK + A+I I K +++++++GE+ +V DAL+QI
Sbjct: 404 KVIGCVIGKSGSVINEIRKRTNANICISKGKK--------DDLVEVSGEVSSVRDALIQI 455
Query: 484 TTRLKHHFFRDAYPSANYPSNPAFLDNLPPFLPYLGRRGISPPGMYSDLGPPPPHAGF 541
RL+ D A PA DN FL G + P S + G+
Sbjct: 456 VLRLREDVLGDKDSVATRKP-PARTDNC-SFLSGSSNAGYTLPSFMSSMASTSGFHGY 511
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 88/377 (23%), Positives = 156/377 (41%), Gaps = 55/377 (14%)
Query: 328 EMLTFRLLCPAEKVGNLIGKGGAIIKSVQQETASEIKVIDAVPDSEDCVIVISGPAH--- 384
E++ +R+LCP + VG +IGK G +I +++ T ++IKV D + VI I
Sbjct: 34 ELVVYRILCPIDVVGGVIGKSGKVINAIRHNTKAKIKVFDQLHGCSQRVITIYCSVKEKQ 93
Query: 385 --------PDDRISPVQEAVFRVQNRVARAIPDVNEHSML-------ARVLVSSNQIGCL 429
++ + Q+A+ +V + + + + N + + R+LV +Q L
Sbjct: 94 EEIGFTKSENEPLCCAQDALLKVYDAIVASDEENNTKTNVDRDDNKECRLLVPFSQSSSL 153
Query: 430 LGKGGSIITEMRKLSGAHIRILGKD-KIPK--CASENEEVIQITGEIEAVHDALLQITTR 486
+GK G I +R+ + A ++++ KD P CA E + V+ I+GE E+V AL ++
Sbjct: 154 IGKAGENIKRIRRRTRASVKVVSKDVSDPSHVCAMEYDNVVVISGEPESVKQALFAVSA- 212
Query: 487 LKHHFFRDAYPSANYPSNPAFLDNLPPFLPYLGRRGISPPGMYSDLGPPPPHAGFPLDDR 546
P N P LD+ +P I P + + + P GF
Sbjct: 213 ----IMYKINPRENIP-----LDSTSQDVP--AASVIVPSDLSNSV---YPQTGF----- 253
Query: 547 PPFMNNIH----RSGIPPHIAERKPWGPQGILEGGGHMGLPDFAGGPPRRILGFGGGNQP 602
+ N H +G+P + QG E + +P FA P GFGG ++
Sbjct: 254 --YSNQDHILQQGAGVPSYFNALSVSDFQGYAETAAN-PVPVFASSLP-VTHGFGGSSRS 309
Query: 603 IITHTSATXXXXXXXXXXXXIYGEDGECLRQILQISDAKIMITD--PKPGAVETKIIISG 660
+ G+ G +++I + S + I + D K G E II++
Sbjct: 310 ----EELVFKVLCPLCNIMRVIGKGGSTIKRIREASGSCIEVNDSRTKCGDDECVIIVTA 365
Query: 661 TPEQTHAAQSLIQAFVM 677
T ++A ++
Sbjct: 366 TESPDDMKSMAVEAVLL 382
>AT2G22600.1 | Symbols: | RNA-binding KH domain-containing protein
| chr2:9596617-9599050 FORWARD LENGTH=632
Length = 632
Score = 117 bits (292), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 145/568 (25%), Positives = 238/568 (41%), Gaps = 86/568 (15%)
Query: 156 SAIRKALSLVFDR--MVEGVED---TADGDEESGKASSFVFRLLILSNQVGCLLGKGGSV 210
SA + AL V +R +V +D DG++E R NQ+G +LG GG
Sbjct: 107 SAAQTALIRVLERSWVVLAAKDGGGVVDGEDEEAYCGILADR-----NQIGAVLGLGGKN 161
Query: 211 IKKMSAESGAQIRILPKDKLPVCASASDEIVQITGGVEVVRKALQSVSLQLLENPP---- 266
++ M SGA IR+LP P+C + +DE++QITG V V+KAL VS + N P
Sbjct: 162 VEWMRRNSGAMIRVLPP---PICGTKNDELIQITGDVLAVKKALVMVSSYIQNNAPLNGY 218
Query: 267 ------RDHESLSTNFTGXXXXXXXXXXXXXXXFAAGPTDTSVFHSAPSLISKFHEGAIH 320
+ +ESLST+ F +S+ ++ + S H
Sbjct: 219 PPPLSIKGYESLSTD---------GNSEDPHSEFFPNLRSSSLSNATEIVASNRHLPYDG 269
Query: 321 GRMRPSQEMLTFRLLCPAEKVGNLIGKGGAIIKSVQQETASEIKVIDAVPDSEDCVIVIS 380
G ++ + F+++ + G +IGK G II+++Q ET + I V + S + V+ +S
Sbjct: 270 G--NSTERKVVFKIIFTSVVAGGIIGKQGTIIRALQNETGASISVGAPLKVSGERVVTVS 327
Query: 381 GPAHPDDRISPVQEAVFRVQNR-----VARAI-PDVNEHSML-ARVLVSSNQIGCLLGKG 433
+ + R S Q A+ V R V + + P ++ +++ ++LV S+ G G
Sbjct: 328 ARENLESRYSHAQNALALVFARSVEIDVEKGLRPGLHNGAIVKTKLLVPSHFANSFNGNG 387
Query: 434 GSIITEMRKLSGAHIRILGKDKIPKCASENEEVIQITGEIEAVHDALLQITTRLKHHFF- 492
E +GA + I +++ + SENE VI+I GE V AL ++++L+ +
Sbjct: 388 NR---EAIIATGADVHISVGNQVLEWISENEVVIEIKGEYSHVQKALTHVSSKLRENLLP 444
Query: 493 -----------RDAYPSANYPSNPAFLDNLPPFLPYLGR-RGISPPGMYSDLGPPPPHAG 540
+ Y SA S + NL P R +S DL A
Sbjct: 445 KKVLGEMRARVSNPYESAGGRSQ---IYNLQPSQQDASRGDSLSVSAAVPDLKMVRSGAE 501
Query: 541 FPLDDRPPFMNNIHRSGIPPHIAERKPWG-PQGILEGGGHMGLP--------DFAGGPPR 591
N++ + + + E + PQ +LE G+ D + PPR
Sbjct: 502 VLKS------NSVMHTEVLKEVDELNDFTLPQSLLEEDLTQGMKQLQMSSNGDVSSLPPR 555
Query: 592 RILGFGGGNQPIITHTSATXXXXXXXXXXXXIYGEDGECLRQILQISDAKIMITDPKPGA 651
++ T +YG DG + + QIS A + + DP
Sbjct: 556 ---------SKGVSVRKITLELAVEKDALGSLYGRDGTGVDNLQQISGANVDVKDPT--G 604
Query: 652 VETKIIISGTPEQTHAAQSLIQAFVMSE 679
E ++ISG PEQ A SLI++ + +
Sbjct: 605 TEATVLISGNPEQARTAMSLIESILTDQ 632
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 73/251 (29%), Positives = 111/251 (44%), Gaps = 53/251 (21%)
Query: 332 FRLLCPAEKVGNLIGKGGAIIKSVQQETASEIKVIDAVPDSEDCVIVI------------ 379
R++C A +G +IG G ++ +++ET ++I V S+ V+ I
Sbjct: 27 IRVVCHASVIGGIIGSNGYVVSKLRRETGTKIHCESPVNGSDHWVVFIVGSTAVNQSILL 86
Query: 380 -------SGPAHPDD---RISPVQEAVFRVQNR--VARA------IPDVNEHSMLARVLV 421
SG H D +S Q A+ RV R V A + D + +L
Sbjct: 87 TDRVGEFSGGEHEDWVTCEVSAAQTALIRVLERSWVVLAAKDGGGVVDGEDEEAYCGILA 146
Query: 422 SSNQIGCLLGKGGSIITEMRKLSGAHIRILGKDKIPKCASENEEVIQITGEIEAVHDALL 481
NQIG +LG GG + MR+ SGA IR+L P C ++N+E+IQITG++ AV AL+
Sbjct: 147 DRNQIGAVLGLGGKNVEWMRRNSGAMIRVLPP---PICGTKNDELIQITGDVLAVKKALV 203
Query: 482 QITTRLKHHFFRDAYPSANYPSNPAFLDNLPPFLPYLGRRGISPPGMYSDLGPPPPHAGF 541
+++ Y N A L+ PP L G +S G D PH+ F
Sbjct: 204 MVSS---------------YIQNNAPLNGYPPPLSIKGYESLSTDGNSED-----PHSEF 243
Query: 542 PLDDRPPFMNN 552
+ R ++N
Sbjct: 244 FPNLRSSSLSN 254
>AT3G04610.1 | Symbols: FLK | RNA-binding KH domain-containing
protein | chr3:1250762-1254272 REVERSE LENGTH=577
Length = 577
Score = 105 bits (263), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 91/360 (25%), Positives = 159/360 (44%), Gaps = 38/360 (10%)
Query: 332 FRLLCPAEKVGNLIGKGGAIIKSVQQETASEIKVIDAVPDSEDCVIVISGPAHPDDRISP 391
FR+L PA+KVG++IG+ G +IK + +ET + IK++D P + + +++SG P+ + P
Sbjct: 189 FRMLVPAQKVGSIIGRKGDVIKKIVEETRARIKILDGPPGTTERAVMVSGKEEPESSLPP 248
Query: 392 VQEAVFRVQNRVARAIPDVNEHS-----MLARVLVSSNQIGCLLGKGGSIITEMRKLSGA 446
+ + RV R+ + + + R+LV ++Q G L+GK G + +++ S
Sbjct: 249 SMDGLLRVHMRIVDGLDGEASQAPPPSKVSTRLLVPASQAGSLIGKQGGTVKAIQEASAC 308
Query: 447 HIRILGKDKIPKCASENEEVIQITGEIEAVHDALLQITTRLKHHFF-RDAYPS-ANYPSN 504
+R+LG + +P A +++ V+++ GE +VH AL I + L+ R P N
Sbjct: 309 IVRVLGSEDLPVFALQDDRVVEVVGEPTSVHRALELIASHLRKFLVDRSIIPFFENQMQK 368
Query: 505 PAF-LDNLPPFLPYLGRRGISPPGMYSDLGPPPPHA------GFPLDDRPPFMNNI-HRS 556
P +D++PP + GPP HA G+ + P H S
Sbjct: 369 PTRQMDHMPP--------------PHQSWGPPQGHAPSVGGGGYGHNPPPYMQPPPRHDS 414
Query: 557 GIPPHIAERKPWGPQGILEGGGHMGLPDFAGGPPRRILGFGGGNQPIITHTSATXXXXXX 616
PP + P +E H G+ + PP + + P + T
Sbjct: 415 YYPPPEMRQPP------MEKQPHQGISAYGREPP---MNVHVSSAPPMVAQQVTQQMQIP 465
Query: 617 XXXXXXIYGEDGECLRQILQISDAKIMITDPKPGAVETKIIISGTPEQTHAAQSLIQAFV 676
+ G G + ++S A + I + + E + +SGT Q A LIQ F+
Sbjct: 466 LSYADAVIGTSGSNISYTRRLSGATVTIQETRGVPGEMTVEVSGTGSQVQTAVQLIQNFM 525
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 53/100 (53%), Gaps = 3/100 (3%)
Query: 162 LSLVFDRMVEGVEDTADGDEESGKASSFVFRLLILSNQVGCLLGKGGSVIKKMSAESGAQ 221
L V R+V+G++ A K S+ RLL+ ++Q G L+GK G +K + S
Sbjct: 253 LLRVHMRIVDGLDGEASQAPPPSKVST---RLLVPASQAGSLIGKQGGTVKAIQEASACI 309
Query: 222 IRILPKDKLPVCASASDEIVQITGGVEVVRKALQSVSLQL 261
+R+L + LPV A D +V++ G V +AL+ ++ L
Sbjct: 310 VRVLGSEDLPVFALQDDRVVEVVGEPTSVHRALELIASHL 349
>AT4G26000.1 | Symbols: PEP | RNA-binding KH domain-containing
protein | chr4:13197280-13199539 FORWARD LENGTH=495
Length = 495
Score = 102 bits (253), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 97/168 (57%), Gaps = 9/168 (5%)
Query: 332 FRLLCPAEKVGNLIGKGGAIIKSVQQETASEIKVIDAVPDSEDCVIVISGPAHPDDRISP 391
FR++ P KVG +IG+ G IK + +ET + IKV+D ++ D +++ISG P+ +SP
Sbjct: 76 FRMIVPVTKVGAIIGRKGDFIKKMCEETRARIKVLDGPVNTPDRIVLISGKEEPEAYMSP 135
Query: 392 VQEAVFRVQNRVARAIPDVNEHSML--------ARVLVSSNQIGCLLGKGGSIITEMRKL 443
+AV RV RV+ +PD ++ + R+LV+S Q L+GK GS+I + +
Sbjct: 136 AMDAVLRVFRRVS-GLPDNDDDDVQNAGSVFSSVRLLVASTQAINLIGKQGSLIKSIVEN 194
Query: 444 SGAHIRILGKDKIPKCASENEEVIQITGEIEAVHDALLQITTRLKHHF 491
SGA +RIL +++ P A+++E ++ + GE + AL I L+
Sbjct: 195 SGASVRILSEEETPFYAAQDERIVDLQGEALKILKALEAIVGHLRRFL 242
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 51/90 (56%)
Query: 168 RMVEGVEDTADGDEESGKASSFVFRLLILSNQVGCLLGKGGSVIKKMSAESGAQIRILPK 227
R V G+ D D D ++ + RLL+ S Q L+GK GS+IK + SGA +RIL +
Sbjct: 145 RRVSGLPDNDDDDVQNAGSVFSSVRLLVASTQAINLIGKQGSLIKSIVENSGASVRILSE 204
Query: 228 DKLPVCASASDEIVQITGGVEVVRKALQSV 257
++ P A+ + IV + G + KAL+++
Sbjct: 205 EETPFYAAQDERIVDLQGEALKILKALEAI 234
>AT5G09560.1 | Symbols: | RNA-binding KH domain-containing protein
| chr5:2967170-2969655 FORWARD LENGTH=612
Length = 612
Score = 93.2 bits (230), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 111/230 (48%), Gaps = 25/230 (10%)
Query: 332 FRLLCPAEKVGNLIGKGGAIIKSVQQETASEIKVIDAVPDSEDCVIVISGPAHPDDRISP 391
++LC E +++ + T + I V D PD ++ ++ I+ D S
Sbjct: 314 LKILCSNE--------SASVVIKTRSVTDASISVGDRHPDCDERLVTITAFEKTKDITSE 365
Query: 392 VQEAVFRV-----QNRVARAIPDVNEHSMLARVLVSSNQIGCLLGKGGSIITEMRKLSGA 446
Q A+ V +N A+ + S+ AR++V SNQI CLLG+ G I T +++ +GA
Sbjct: 366 SQRALVLVFSNMYENATAKVLDSGLTSSITARLVVRSNQINCLLGEEGRIKTTIQQRTGA 425
Query: 447 HIRILGKDKIPKCASENEEVIQITGEIEAVHDALLQITTRLK-----HHFFRDAYPSANY 501
I +L ++ PKC SEN +V+QI+GE V +A+ Q+T+ L+ F R + + NY
Sbjct: 426 FITVLNVEQNPKCVSENNQVVQISGEFPNVREAINQVTSMLREDLINQSFQRGSQYAVNY 485
Query: 502 PSNPAFLDNLPP---FLPYLGRRGISPPGMYSDLGPPPPHAGFPLDDRPP 548
+P F + P + P GR P +D+ A L + PP
Sbjct: 486 SEDP-FPELFSPTAGYTPTFGRSSTMDP---NDIFHYSSQASSRLWESPP 531
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 62/111 (55%), Gaps = 3/111 (2%)
Query: 154 IHSAIRKALSLVFDRMVEGVEDTADGDEESGKASSFVFRLLILSNQVGCLLGKGGSVIKK 213
I S ++AL LVF M E +SG SS RL++ SNQ+ CLLG+ G +
Sbjct: 362 ITSESQRALVLVFSNMYENATAKV---LDSGLTSSITARLVVRSNQINCLLGEEGRIKTT 418
Query: 214 MSAESGAQIRILPKDKLPVCASASDEIVQITGGVEVVRKALQSVSLQLLEN 264
+ +GA I +L ++ P C S ++++VQI+G VR+A+ V+ L E+
Sbjct: 419 IQQRTGAFITVLNVEQNPKCVSENNQVVQISGEFPNVREAINQVTSMLRED 469
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 86/186 (46%), Gaps = 28/186 (15%)
Query: 328 EMLTFRLLCPAEKVGNLIGKGGAIIKSVQQETASEIKVIDA-VPDSEDCVIVISGPAHPD 386
E +TFR+LC + G++IGK G ++K + + T S I V + DS +I I G
Sbjct: 28 EYVTFRILCNVSQAGHVIGKHGGMVKKLHKSTESSIWVEKTPLDDSPYRIIKIFGHVGSV 87
Query: 387 DRI-----------------------SPVQEAVFRVQNRVARAIPDVNEHSMLARVLVSS 423
R+ S Q A+ RV A D ++ +L+
Sbjct: 88 SRVKLGVIVNNVSNREKKEQEQEVEVSRAQYALIRVFE--ALNFGDCTSSTVSCNLLMEG 145
Query: 424 NQIGCLLGKGGSIITEMRKLSGAHIRILGKDKIPKCASENEEVIQITG-EIEAVHDALLQ 482
+ + ++GK G ++ + + +G ++++ D + C + + V++I G + AV AL+
Sbjct: 146 SHVVTVIGKNGELMQRILEETGCNVQLRSHD-LSICTNPGDVVLKIEGNRLSAVMKALVS 204
Query: 483 ITTRLK 488
I++RL+
Sbjct: 205 ISSRLQ 210
>AT2G03110.1 | Symbols: | RNA binding;nucleic acid binding |
chr2:935432-935975 FORWARD LENGTH=153
Length = 153
Score = 66.6 bits (161), Expect = 6e-11, Method: Composition-based stats.
Identities = 35/78 (44%), Positives = 51/78 (65%), Gaps = 3/78 (3%)
Query: 192 RLLILSNQVGCLLGKGGSVIKKMSAESGAQIRILPKDKLPVCASA--SDEIVQITGGVEV 249
R+L+ S+Q+G L+GKGG +I+ + ++ AQIR+ D LP+CA A DE++QI G
Sbjct: 76 RMLVPSDQIGYLIGKGGPIIQTLRNDTNAQIRV-RNDNLPMCALALSHDELLQIIGDPSA 134
Query: 250 VRKALQSVSLQLLENPPR 267
VR+AL V+ L NP R
Sbjct: 135 VREALYQVAFLLYNNPSR 152
Score = 57.8 bits (138), Expect = 3e-08, Method: Composition-based stats.
Identities = 44/143 (30%), Positives = 73/143 (51%), Gaps = 23/143 (16%)
Query: 363 IKVIDAVPDSEDCVIVISGPAHPDDRIS--------PVQEAVFRVQNRVARAIPDV---- 410
++V +A+P ++ V+ I + +RI P +A+F+V + V D
Sbjct: 1 MRVNEALPGCDERVVTIYSNSEERNRIEDDNEDFVCPAFDALFKVHDMVVVEEFDDDDDY 60
Query: 411 --------NEHSMLARVLVSSNQIGCLLGKGGSIITEMRKLSGAHIRILGKDKIPKC--A 460
+ + R+LV S+QIG L+GKGG II +R + A IR+ D +P C A
Sbjct: 61 NDNDEYSEGQTVVTVRMLVPSDQIGYLIGKGGPIIQTLRNDTNAQIRVR-NDNLPMCALA 119
Query: 461 SENEEVIQITGEIEAVHDALLQI 483
++E++QI G+ AV +AL Q+
Sbjct: 120 LSHDELLQIIGDPSAVREALYQV 142
>AT5G53060.2 | Symbols: | RNA-binding KH domain-containing protein
| chr5:21515355-21520310 FORWARD LENGTH=198
Length = 198
Score = 62.4 bits (150), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 63/123 (51%), Gaps = 23/123 (18%)
Query: 331 TFRLLCPAEKVGNLIGKGGAIIKSVQQETASEIKVIDAVPDSEDCVIVISGPAH--PDDR 388
T+R+LC K G +IGK G IIKS++Q T + I V + VP + +I IS PD R
Sbjct: 69 TYRILCHDAKAGGVIGKSGTIIKSIRQHTGAWINVHELVPGDAERIIEISDNRRRDPDGR 128
Query: 389 I---SPVQEAVFRVQNRVARAI---------PDVNE---------HSMLARVLVSSNQIG 427
+ SP QEA+F V +R+ + P+ E ++ R++VS +G
Sbjct: 129 MPSFSPAQEALFSVHDRILESEAQFGYGGPPPEEEEDYGGVRPGGGRVVTRLVVSRMHVG 188
Query: 428 CLL 430
CLL
Sbjct: 189 CLL 191
>AT1G33680.1 | Symbols: | KH domain-containing protein |
chr1:12204056-12208282 FORWARD LENGTH=763
Length = 763
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 75/287 (26%), Positives = 124/287 (43%), Gaps = 51/287 (17%)
Query: 317 GAIHGRMRPSQEMLTFRLLCPAEKVGNLIGKGGAIIKSVQQETASEIKV---IDAVPDSE 373
G+ H + +Q T R+ P+ KVG LIGKGG +++ +Q + ++I++ +A P S
Sbjct: 220 GSTHKEVDDTQ-STTRRIDVPSSKVGTLIGKGGEMVRYLQVNSGAKIQIRRDAEADPSSA 278
Query: 374 DCVIVISGPAHPDDRISPVQEAVFR------VQNRVARAIPDVNEHSMLARVLVSSNQIG 427
+ I G ++ + AV V AR +P+ E + V S+++G
Sbjct: 279 LRPVEIIGTVSCIEKAEKLINAVIAEVEAGGVPALAARGVPEQME------IKVPSDKVG 332
Query: 428 CLLGKGGSIITEMRKLSGAHIRILGKDKIPKCASENEEVIQITGEIEAVHDALLQITTRL 487
++G+GG I M+ S A I+++ ++ + + E ++I+G+ + A T +
Sbjct: 333 VIIGRGGETIKNMQTKSRARIQLIPQN---EGDASKERTVRISGDKRQIDIA----TALI 385
Query: 488 KHHFFRDAYPS--ANYPSNPAFLDNLPPFLPYLGRRGI----SPPGMYSDLGP------- 534
K ++D PS + + A+ P P G RG S P Y GP
Sbjct: 386 KDVMYQDGRPSPYSGGFNQQAYQPRGPGGPPQWGSRGPHGPHSMPYNYHHGGPYPSQGSH 445
Query: 535 --PPPHAGFPLDDRPPFMNNIHRSGI-------PPHIAERKPWGPQG 572
PP G+P PP RSG PPH +G QG
Sbjct: 446 FRPPNSGGYPPQHMPP------RSGYGSGWEQRPPHSGPYDYYGRQG 486
>AT4G10070.1 | Symbols: | KH domain-containing protein |
chr4:6295608-6299759 REVERSE LENGTH=725
Length = 725
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 71/297 (23%), Positives = 118/297 (39%), Gaps = 81/297 (27%)
Query: 328 EMLTFRLLCPAEKVGNLIGKGGAIIKSVQQETASEIKVIDAVPDSEDCVIVISGPAHPDD 387
+ T R+ P+ KVG LIGKGG I+ +Q + ++I+++ DSE A P
Sbjct: 174 QSTTRRIDVPSSKVGVLIGKGGETIRYLQFNSGAKIQILR---DSE---------ADPSS 221
Query: 388 RISPVQ--------EAVFRVQNRVARAIPDVNEHSMLAR---------------VLVSSN 424
+ PV+ E+ ++ + V +++AR + V ++
Sbjct: 222 ALRPVEIIGSVACIESAEKLISAVIAEAEAGGSPALVARGHPSTHAIGIPEQIEIKVPND 281
Query: 425 QIGCLLGKGGSIITEMRKLSGAHIRILGKDKIPKCASEN---EEVIQITGEIEAVHDALL 481
++G ++G+GG I M+ SGA ++ IP+ A + E ++I+G+ + A
Sbjct: 282 KVGLIIGRGGETIKNMQTRSGARTQL-----IPQHAEGDGLKERTVRISGDKMQIDIATD 336
Query: 482 QITTRLKHHFFRDAYPSANYPSNPAFLDNLPPFLPYLGRRGISPPGMYSDLGPPPPHAGF 541
I + + +Y S Y + PA+ P P G RG PHA
Sbjct: 337 MIKDVMNQNARPSSY-SGGY-NQPAYRPQGPGGPPQWGSRG--------------PHAPH 380
Query: 542 PLDDRPPFMNNIHRSGIPPHIAERKPWGPQGILEGGGHMGLPDFAGGPPRRILGFGG 598
P D P R P+ Q G + P F G PP+ + GG
Sbjct: 381 PYDYHP-----------------RGPYSSQ-----GSYYNSPGFGGYPPQHMPPRGG 415