Miyakogusa Predicted Gene
- Lj1g3v2069890.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v2069890.2 tr|Q6NNL9|Q6NNL9_ARATH At5g11630 OS=Arabidopsis
thaliana GN=At5g11630 PE=4 SV=1,56.04,1e-18,seg,NULL,CUFF.28418.2
(91 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G11630.2 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 92 6e-20
AT5G11630.1 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 81 1e-16
AT5G47455.3 | Symbols: | unknown protein; BEST Arabidopsis thal... 71 1e-13
AT4G17310.2 | Symbols: | unknown protein; LOCATED IN: chloropla... 71 1e-13
AT5G47455.4 | Symbols: | unknown protein; BEST Arabidopsis thal... 59 9e-10
AT5G47455.2 | Symbols: | unknown protein; BEST Arabidopsis thal... 58 1e-09
AT5G47455.5 | Symbols: | unknown protein; BEST Arabidopsis thal... 58 1e-09
AT4G17310.1 | Symbols: | unknown protein; LOCATED IN: chloropla... 58 2e-09
AT5G47455.7 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 57 3e-09
AT5G47455.6 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 57 3e-09
AT5G47455.1 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 57 3e-09
AT4G39300.2 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 50 3e-07
AT4G39300.1 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 47 2e-06
>AT5G11630.2 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast;
EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
growth stages; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT4G17310.2); Has 82 Blast
hits to 82 proteins in 10 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 82; Viruses - 0;
Other Eukaryotes - 0 (source: NCBI BLink). |
chr5:3740545-3741529 FORWARD LENGTH=91
Length = 91
Score = 92.4 bits (228), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 49/91 (53%), Positives = 62/91 (68%)
Query: 1 MASRYRSFSQPAMSLIKSTITKPTTNPKPSPFLFKXXXXXXXXXXVAELGCVQSLLPLHS 60
MASR RS S+PA S +S + KP+ PK + + +LG +QSLLPL+S
Sbjct: 1 MASRCRSLSKPAFSAFRSAMNKPSIRPKSASSFIGVPPSPGFSRPIGQLGSLQSLLPLYS 60
Query: 61 AVSSARLTSCLGIDSRTSRSLSQEMGLSTPR 91
AV+SARLTSCLGIDS+ SRSL+QE+GLS PR
Sbjct: 61 AVASARLTSCLGIDSQNSRSLAQELGLSVPR 91
>AT5G11630.1 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast;
EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
growth stages; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT4G17310.1); Has 90 Blast
hits to 90 proteins in 10 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 90; Viruses - 0;
Other Eukaryotes - 0 (source: NCBI BLink). |
chr5:3740545-3740909 FORWARD LENGTH=93
Length = 93
Score = 80.9 bits (198), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/85 (51%), Positives = 56/85 (65%)
Query: 1 MASRYRSFSQPAMSLIKSTITKPTTNPKPSPFLFKXXXXXXXXXXVAELGCVQSLLPLHS 60
MASR RS S+PA S +S + KP+ PK + + +LG +QSLLPL+S
Sbjct: 1 MASRCRSLSKPAFSAFRSAMNKPSIRPKSASSFIGVPPSPGFSRPIGQLGSLQSLLPLYS 60
Query: 61 AVSSARLTSCLGIDSRTSRSLSQEM 85
AV+SARLTSCLGIDS+ SRSL+Q M
Sbjct: 61 AVASARLTSCLGIDSQNSRSLAQGM 85
>AT5G47455.3 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT4G17310.2); Has 138 Blast hits to 138 proteins
in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0;
Fungi - 0; Plants - 138; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr5:19250805-19252229 FORWARD
LENGTH=106
Length = 106
Score = 71.2 bits (173), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/45 (75%), Positives = 40/45 (88%)
Query: 47 AELGCVQSLLPLHSAVSSARLTSCLGIDSRTSRSLSQEMGLSTPR 91
+ELGCVQSLLPLHS V++ARLTSCL SR+SR+L+QEMGLS PR
Sbjct: 62 SELGCVQSLLPLHSTVAAARLTSCLSTTSRSSRALTQEMGLSVPR 106
>AT4G17310.2 | Symbols: | unknown protein; LOCATED IN:
chloroplast; EXPRESSED IN: 9 plant structures;
EXPRESSED DURING: LP.04 four leaves visible, 4
anthesis, petal differentiation and expansion stage;
BEST Arabidopsis thaliana protein match is: unknown
protein (TAIR:AT5G47455.3); Has 35333 Blast hits to
34131 proteins in 2444 species: Archae - 798; Bacteria
- 22429; Metazoa - 974; Fungi - 991; Plants - 531;
Viruses - 0; Other Eukaryotes - 9610 (source: NCBI
BLink). | chr4:9685429-9686848 REVERSE LENGTH=97
Length = 97
Score = 71.2 bits (173), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/45 (75%), Positives = 40/45 (88%)
Query: 47 AELGCVQSLLPLHSAVSSARLTSCLGIDSRTSRSLSQEMGLSTPR 91
+ELGCVQSLLPLHS V++ARLTSCL SR+SR+LSQE+GLS PR
Sbjct: 53 SELGCVQSLLPLHSTVAAARLTSCLSTTSRSSRALSQELGLSVPR 97
>AT5G47455.4 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT4G17310.2); Has 125 Blast hits to 125 proteins
in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0;
Fungi - 0; Plants - 125; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr5:19250805-19252261 FORWARD
LENGTH=116
Length = 116
Score = 58.5 bits (140), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 28/42 (66%), Positives = 35/42 (83%)
Query: 47 AELGCVQSLLPLHSAVSSARLTSCLGIDSRTSRSLSQEMGLS 88
+ELGCVQSLLPLHS V++ARLTSCL SR+SR+L+Q+ S
Sbjct: 62 SELGCVQSLLPLHSTVAAARLTSCLSTTSRSSRALTQDGTFS 103
>AT5G47455.2 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT4G17310.2); Has 132 Blast hits to 132 proteins
in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0;
Fungi - 0; Plants - 132; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr5:19250805-19251954
FORWARD LENGTH=104
Length = 104
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/38 (71%), Positives = 34/38 (89%)
Query: 47 AELGCVQSLLPLHSAVSSARLTSCLGIDSRTSRSLSQE 84
+ELGCVQSLLPLHS V++ARLTSCL SR+SR+L+Q+
Sbjct: 62 SELGCVQSLLPLHSTVAAARLTSCLSTTSRSSRALTQD 99
>AT5G47455.5 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT4G17310.2); Has 132 Blast hits to 132 proteins
in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0;
Fungi - 0; Plants - 132; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr5:19250805-19251954
FORWARD LENGTH=104
Length = 104
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/38 (71%), Positives = 34/38 (89%)
Query: 47 AELGCVQSLLPLHSAVSSARLTSCLGIDSRTSRSLSQE 84
+ELGCVQSLLPLHS V++ARLTSCL SR+SR+L+Q+
Sbjct: 62 SELGCVQSLLPLHSTVAAARLTSCLSTTSRSSRALTQD 99
>AT4G17310.1 | Symbols: | unknown protein; LOCATED IN:
chloroplast; EXPRESSED IN: 9 plant structures;
EXPRESSED DURING: LP.04 four leaves visible, 4
anthesis, petal differentiation and expansion stage;
BEST Arabidopsis thaliana protein match is: unknown
protein (TAIR:AT5G47455.7); Has 164 Blast hits to 164
proteins in 12 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 164; Viruses - 0;
Other Eukaryotes - 0 (source: NCBI BLink). |
chr4:9686466-9686848 REVERSE LENGTH=99
Length = 99
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/37 (75%), Positives = 33/37 (89%)
Query: 47 AELGCVQSLLPLHSAVSSARLTSCLGIDSRTSRSLSQ 83
+ELGCVQSLLPLHS V++ARLTSCL SR+SR+LSQ
Sbjct: 53 SELGCVQSLLPLHSTVAAARLTSCLSTTSRSSRALSQ 89
>AT5G47455.7 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast;
EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8
growth stages; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT4G17310.1); Has 147 Blast
hits to 147 proteins in 13 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 147;
Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
| chr5:19250805-19251665 FORWARD LENGTH=100
Length = 100
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 27/37 (72%), Positives = 33/37 (89%)
Query: 47 AELGCVQSLLPLHSAVSSARLTSCLGIDSRTSRSLSQ 83
+ELGCVQSLLPLHS V++ARLTSCL SR+SR+L+Q
Sbjct: 62 SELGCVQSLLPLHSTVAAARLTSCLSTTSRSSRALTQ 98
>AT5G47455.6 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast;
EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8
growth stages; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT4G17310.1); Has 35333 Blast
hits to 34131 proteins in 2444 species: Archae - 798;
Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants -
531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI
BLink). | chr5:19250805-19251665 FORWARD LENGTH=100
Length = 100
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 27/37 (72%), Positives = 33/37 (89%)
Query: 47 AELGCVQSLLPLHSAVSSARLTSCLGIDSRTSRSLSQ 83
+ELGCVQSLLPLHS V++ARLTSCL SR+SR+L+Q
Sbjct: 62 SELGCVQSLLPLHSTVAAARLTSCLSTTSRSSRALTQ 98
>AT5G47455.1 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast;
EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8
growth stages; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT4G17310.1); Has 147 Blast
hits to 147 proteins in 13 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 147;
Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
| chr5:19250805-19251665 FORWARD LENGTH=100
Length = 100
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 27/37 (72%), Positives = 33/37 (89%)
Query: 47 AELGCVQSLLPLHSAVSSARLTSCLGIDSRTSRSLSQ 83
+ELGCVQSLLPLHS V++ARLTSCL SR+SR+L+Q
Sbjct: 62 SELGCVQSLLPLHSTVAAARLTSCLSTTSRSSRALTQ 98
>AT4G39300.2 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast;
EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
growth stages; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G11630.2); Has 89 Blast
hits to 89 proteins in 11 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0;
Other Eukaryotes - 0 (source: NCBI BLink). |
chr4:18286835-18288156 FORWARD LENGTH=96
Length = 96
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 49/87 (56%), Gaps = 8/87 (9%)
Query: 1 MASRYRSFSQPAMSLIKSTITKPTTNPKPSPFLFKXXXXXXXXXXVAELGCVQSLLPLHS 60
+ SR R+ +Q +++L KPTT SPF ++ LG V++++PLHS
Sbjct: 16 LVSRSRTVTQKSLNL------KPTTTS--SPFASMSQSIPRASRVLSALGSVETMIPLHS 67
Query: 61 AVSSARLTSCLGIDSRTSRSLSQEMGL 87
AV+SARL S + DS LSQE+G+
Sbjct: 68 AVASARLRSSIAADSSCWSLLSQELGV 94
>AT4G39300.1 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast;
EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
growth stages; Has 30201 Blast hits to 17322 proteins
in 780 species: Archae - 12; Bacteria - 1396; Metazoa -
17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other
Eukaryotes - 2996 (source: NCBI BLink). |
chr4:18286835-18287823 FORWARD LENGTH=96
Length = 96
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 50/90 (55%), Gaps = 10/90 (11%)
Query: 1 MASRYRSFSQPAMSLIKSTITKPTTNPKPSPFLFKXXXXXXXXXXVAELGCVQSLLPLHS 60
+ SR R+ +Q +++L KPTT SPF ++ LG V++++PLHS
Sbjct: 16 LVSRSRTVTQKSLNL------KPTTTS--SPFASMSQSIPRASRVLSALGSVETMIPLHS 67
Query: 61 AVSSARLTSCLGIDSRTSRSLSQEMGLSTP 90
AV+SARL S + DS LSQ GL+TP
Sbjct: 68 AVASARLRSSIAADSSCWSLLSQ--GLATP 95