Miyakogusa Predicted Gene

Lj1g3v2069880.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2069880.1 Non Chatacterized Hit- tr|I3S8F6|I3S8F6_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,98.46,0,Peptidyl-tRNA hydrolase II,Peptidyl-tRNA hydrolase II
domain; arch_pth2: peptidyl-tRNA hydrolase,Pep,CUFF.28414.1
         (237 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G32900.2 | Symbols:  | Peptidyl-tRNA hydrolase II (PTH2) fami...   225   2e-59
AT4G32900.1 | Symbols:  | Peptidyl-tRNA hydrolase II (PTH2) fami...   134   6e-32
AT3G03010.2 | Symbols:  | Peptidyl-tRNA hydrolase II (PTH2) fami...   122   2e-28
AT3G03010.1 | Symbols:  | Peptidyl-tRNA hydrolase II (PTH2) fami...   122   2e-28
AT5G16870.1 | Symbols:  | Peptidyl-tRNA hydrolase II (PTH2) fami...   121   3e-28

>AT4G32900.2 | Symbols:  | Peptidyl-tRNA hydrolase II (PTH2) family
           protein | chr4:15878944-15880979 REVERSE LENGTH=193
          Length = 193

 Score =  225 bits (573), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 111/148 (75%), Positives = 128/148 (86%), Gaps = 9/148 (6%)

Query: 99  LSKKIFSP--------SKVQQHLTLSGNG-DREFKMVLVVRQDLKMKSGKIASQCAHAAT 149
           LS+++ SP        SKVQ+  ++ GNG D+E KMVLVVRQDLKM++GKIASQCAHAAT
Sbjct: 46  LSQQVTSPVKRSRLLSSKVQKQSSVPGNGKDQELKMVLVVRQDLKMRTGKIASQCAHAAT 105

Query: 150 GMYAELMQSDRSLLRQWEQCGQPKIVVTCRNQQEMNKLKETAESIGLPTFVVADAGRTEV 209
           GMYAELMQSDR LLR+WE+ GQPKIVVTC+NQQEMNK+ E AES+GLPTFVVADAGRTEV
Sbjct: 106 GMYAELMQSDRYLLRRWEENGQPKIVVTCKNQQEMNKITEAAESVGLPTFVVADAGRTEV 165

Query: 210 SAGSKTVLAVGPGPKASVDSVTGRLALL 237
           +AGS+TVLAVGPGPK  VDS+TGRLALL
Sbjct: 166 AAGSRTVLAVGPGPKELVDSITGRLALL 193


>AT4G32900.1 | Symbols:  | Peptidyl-tRNA hydrolase II (PTH2) family
           protein | chr4:15879542-15880979 REVERSE LENGTH=140
          Length = 140

 Score =  134 bits (337), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 67/95 (70%), Positives = 79/95 (83%), Gaps = 9/95 (9%)

Query: 99  LSKKIFSP--------SKVQQHLTLSGNG-DREFKMVLVVRQDLKMKSGKIASQCAHAAT 149
           LS+++ SP        SKVQ+  ++ GNG D+E KMVLVVRQDLKM++GKIASQCAHAAT
Sbjct: 46  LSQQVTSPVKRSRLLSSKVQKQSSVPGNGKDQELKMVLVVRQDLKMRTGKIASQCAHAAT 105

Query: 150 GMYAELMQSDRSLLRQWEQCGQPKIVVTCRNQQEM 184
           GMYAELMQSDR LLR+WE+ GQPKIVVTC+NQQEM
Sbjct: 106 GMYAELMQSDRYLLRRWEENGQPKIVVTCKNQQEM 140


>AT3G03010.2 | Symbols:  | Peptidyl-tRNA hydrolase II (PTH2) family
           protein | chr3:678982-680137 REVERSE LENGTH=179
          Length = 179

 Score =  122 bits (306), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 58/117 (49%), Positives = 83/117 (70%), Gaps = 1/117 (0%)

Query: 121 REFKMVLVVRQDLKMKSGKIASQCAHAATGMYAELMQSDRSLLRQWEQCGQPKIVVTCRN 180
           + FKMVLVVR DLKM  GKIA+QC+HA  G+Y +L+Q     L +WE C QPK+VV   +
Sbjct: 64  KNFKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKLLQRAPKALNRWEYCAQPKVVVKIES 123

Query: 181 QQEMNKLKETAESIGLPTFVVADAGRTEVSAGSKTVLAVGPGPKASVDSVTGRLALL 237
           ++EM  L+E A+++ LPT +  DAG+T+++  S+TV+A+  GP  +VD VTG L L+
Sbjct: 124 EEEMLVLQERAKTLKLPTHITIDAGKTQIAPNSRTVMAI-LGPVDNVDEVTGGLKLM 179


>AT3G03010.1 | Symbols:  | Peptidyl-tRNA hydrolase II (PTH2) family
           protein | chr3:678982-680137 REVERSE LENGTH=179
          Length = 179

 Score =  122 bits (306), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 58/117 (49%), Positives = 83/117 (70%), Gaps = 1/117 (0%)

Query: 121 REFKMVLVVRQDLKMKSGKIASQCAHAATGMYAELMQSDRSLLRQWEQCGQPKIVVTCRN 180
           + FKMVLVVR DLKM  GKIA+QC+HA  G+Y +L+Q     L +WE C QPK+VV   +
Sbjct: 64  KNFKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKLLQRAPKALNRWEYCAQPKVVVKIES 123

Query: 181 QQEMNKLKETAESIGLPTFVVADAGRTEVSAGSKTVLAVGPGPKASVDSVTGRLALL 237
           ++EM  L+E A+++ LPT +  DAG+T+++  S+TV+A+  GP  +VD VTG L L+
Sbjct: 124 EEEMLVLQERAKTLKLPTHITIDAGKTQIAPNSRTVMAI-LGPVDNVDEVTGGLKLM 179


>AT5G16870.1 | Symbols:  | Peptidyl-tRNA hydrolase II (PTH2) family
           protein | chr5:5546975-5548542 REVERSE LENGTH=169
          Length = 169

 Score =  121 bits (304), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 60/116 (51%), Positives = 82/116 (70%), Gaps = 1/116 (0%)

Query: 122 EFKMVLVVRQDLKMKSGKIASQCAHAATGMYAELMQSDRSLLRQWEQCGQPKIVVTCRNQ 181
           +FKMVLVVR DLKM  GKIA+QC+HA  G+Y +L++     L  WE+C QPK+VV   ++
Sbjct: 55  DFKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKLVRRAPKALDCWEECAQPKVVVKIEDE 114

Query: 182 QEMNKLKETAESIGLPTFVVADAGRTEVSAGSKTVLAVGPGPKASVDSVTGRLALL 237
            EM +L+E A+S+ LPT +  DAGRT+++  S+TV+A+  GP   VD VTG L LL
Sbjct: 115 DEMLELQERAKSLKLPTHITIDAGRTQIAPNSRTVMAI-LGPVEVVDEVTGGLKLL 169