Miyakogusa Predicted Gene

Lj1g3v2068830.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2068830.1 Non Chatacterized Hit- tr|I1MJF2|I1MJF2_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.24791
PE,84.78,0,seg,NULL; Ribosomal_L18e,Ribosomal protein L18e/L15P; no
description,NULL; 60S RIBOSOMAL PROTEIN
L10,NODE_874_length_1271_cov_66.388672.path2.1
         (279 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G64670.1 | Symbols:  | Ribosomal protein L18e/L15 superfamily...   348   3e-96

>AT5G64670.1 | Symbols:  | Ribosomal protein L18e/L15 superfamily
           protein | chr5:25852535-25853880 REVERSE LENGTH=281
          Length = 281

 Score =  348 bits (892), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 192/289 (66%), Positives = 209/289 (72%), Gaps = 19/289 (6%)

Query: 1   MLRRRL-SALSTSIIRSSIH--SKP--VIRHPSIQLHP----VQFPHSRNAYSAFNPNTL 51
           MLRRRL S +STS+I SS H  +KP  +I  P +Q  P     Q P S +   +F     
Sbjct: 1   MLRRRLLSIISTSLINSSFHQTAKPRFIISSPLLQCRPSPISTQIPTSTSRALSF----- 55

Query: 52  QGFQGFRAYSLLMLNDLRDNVPXXXXXXXXXXXXXXXXXXXXXXHKGQRARKGSKLGFEG 111
              QG RAYSLL LNDLRDNVP                      HKGQ+AR   K GFEG
Sbjct: 56  ---QGIRAYSLLSLNDLRDNVPRKLKTRKGRGIGSGKGKTAGRGHKGQKARGTMKFGFEG 112

Query: 112 GQTPLRRRMPKRGFKNPFSLTFQPVGLGKIAKLINAGKIDSSELITMKTLKDSGAIGKQI 171
           GQTPLRRR+PKRGFKN F L FQPVGLGKIAKLINAGKIDS ELITMKTLKD GAIGKQI
Sbjct: 113 GQTPLRRRLPKRGFKNKFKLHFQPVGLGKIAKLINAGKIDSHELITMKTLKDVGAIGKQI 172

Query: 172 QDGVRLMGRGSEQILWPIHLEVSRVTVRAKEAVEAAGGSVRKVYYNKLGFKALLKPEWFE 231
           +DGVRLMGRG++ I WP+H EVSRVTVRAKE VEAAGGSVR+VYYNKLG +ALLKPEWFE
Sbjct: 173 EDGVRLMGRGADDIKWPLHFEVSRVTVRAKEVVEAAGGSVRRVYYNKLGLRALLKPEWFE 232

Query: 232 KKGRLLPKAARPPPKQKDKVDSIGRLPAPTKPIPFLV--EGSKDVPVLS 278
           KKGRLLPKAARPPPKQ+DKVDSIGRLPAP KPIPF    E   + PV S
Sbjct: 233 KKGRLLPKAARPPPKQQDKVDSIGRLPAPKKPIPFFAAEETKVESPVES 281