Miyakogusa Predicted Gene

Lj1g3v2068680.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2068680.1 Non Chatacterized Hit- tr|E6R0S1|E6R0S1_CRYGW
Putative uncharacterized protein OS=Cryptococcus
gatti,32.06,6e-19,zf-RING_2,Zinc finger, RING-type; SWIM,Zinc finger,
SWIM-type; no description,Zinc finger, RING/FYVE,CUFF.28395.1
         (251 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G11620.1 | Symbols:  | SWIM zinc finger family protein / mito...   173   8e-44

>AT5G11620.1 | Symbols:  | SWIM zinc finger family protein /
           mitogen-activated protein kinase kinase kinase
           (MAPKKK)-related | chr5:3739076-3740127 REVERSE
           LENGTH=273
          Length = 273

 Score =  173 bits (439), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 104/244 (42%), Positives = 134/244 (54%), Gaps = 42/244 (17%)

Query: 33  LSQPISDRIVXXXXXXXXXXXXXXX-TFFILGATGNVYTVTLTSSPSCTCPDRTTPCKHI 91
           L+QP++DRI+                TF +LGAT NVYTVTL ++P+CTCPDR  PCKHI
Sbjct: 22  LAQPVADRILRALRHRIRLLHRPNAGTFHVLGATCNVYTVTLMATPTCTCPDRKKPCKHI 81

Query: 92  LFVLIRVLGVPLEDTILRRKTLRPCHLQRLLSEPTSSEALAGDTLRQRFHQLFFGGGKG- 150
           LFVLIRVLG+PL+D  LR++ LR C L  L S PT  + LA   L+QRF QLF       
Sbjct: 82  LFVLIRVLGIPLDDKCLRQRRLRTCLLFHLFSAPTRPDCLASFRLQQRFLQLFPATTSQP 141

Query: 151 -----------GTETVVPEEGASCPICLDEM--------------GKEGKLVACGTCRNA 185
                        E  V EE A+CPICLD++               KE  +V C  C+N 
Sbjct: 142 GYTTNSSSSTSKMENEVDEEPATCPICLDDIIAIENVDGGNGGGKEKETAVVKCRVCKNK 201

Query: 186 VHEECFVRWRRSKVSGATRCVICRARW-RNRAEQDE-------------YLNLSEYLSDE 231
           VH+EC + WR+S+      CV+CRARW  NR+ ++              YLNL+ Y+ DE
Sbjct: 202 VHDECMLAWRKSRGRRPAICVVCRARWPANRSSKNPNVGDNNENCHGNCYLNLAPYV-DE 260

Query: 232 DVAD 235
           +V D
Sbjct: 261 EVED 264