Miyakogusa Predicted Gene

Lj1g3v2063290.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2063290.1 tr|C1E5F9|C1E5F9_MICSR Predicted protein
OS=Micromonas sp. (strain RCC299 / NOUM17) GN=MICPUN_81588
,54.02,1e-18,seg,NULL; SUBFAMILY NOT NAMED,NULL; UNCHARACTERIZED,ER
membrane protein complex subunit 1; DUF1620,D,CUFF.28365.1
         (98 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G11560.1 | Symbols:  | catalytics | chr5:3709734-3713994 REVE...   117   1e-27

>AT5G11560.1 | Symbols:  | catalytics | chr5:3709734-3713994 REVERSE
           LENGTH=982
          Length = 982

 Score =  117 bits (294), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 55/87 (63%), Positives = 66/87 (75%)

Query: 12  QSYITHSLKVEGLRGIVTVPAKLESTSLVFAYGVDLFFTQIAPSRTYDSLTEDFSYXXXX 71
           Q+Y+THS KVEGLRGIVT P+KLEST+ VFAYGVDLF+T++APS+TYDSLT+DFSY    
Sbjct: 896 QAYVTHSHKVEGLRGIVTAPSKLESTTHVFAYGVDLFYTRLAPSKTYDSLTDDFSYALLL 955

Query: 72  XXXXXXXXXXXXXWVLSERKDLEEKWR 98
                        WVLSE+K+L EKWR
Sbjct: 956 ITIVALVAAIYITWVLSEKKELSEKWR 982