Miyakogusa Predicted Gene

Lj1g3v2051930.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2051930.1 Non Chatacterized Hit- tr|I1K9A0|I1K9A0_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.15194
PE,93.73,0,SUBFAMILY NOT NAMED,NULL; EUKARYOTIC TRANSLATION INITIATION
FACTOR 3,NULL; Paf67,Translation
initiat,gene.Ljchr1_pseudomol_20120830.path1.gene4802.1
         (384 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G25757.1 | Symbols:  | RNA polymerase I-associated factor PAF...   588   e-168
AT5G25754.1 | Symbols:  | RNA polymerase I-associated factor PAF...   588   e-168

>AT5G25757.1 | Symbols:  | RNA polymerase I-associated factor PAF67
           | chr5:8965515-8967460 REVERSE LENGTH=514
          Length = 514

 Score =  588 bits (1516), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 291/352 (82%), Positives = 320/352 (90%), Gaps = 6/352 (1%)

Query: 1   MYETSFQTLSERLFKDTPWPSVDAGAHYGDNDNAFCLLYREMRCRHLYARLTPKLRQRIE 60
           M ETSFQ++SERLFKDTPWPSV+A A Y DND+ FCLLYREM  RHLYARL+P L+QRI+
Sbjct: 49  MCETSFQSISERLFKDTPWPSVEAIAPYVDNDHVFCLLYREMWFRHLYARLSPTLKQRID 108

Query: 61  SWDNYCPLFQVVLHGVVNMQLPNQWLWDMVDEFVYQFQSFCQYRAKMKNKTEQEIALLRQ 120
           S+DNYC LFQVVLHGVVNMQLPNQWLWDMVDEFVYQFQSFCQ+RAK+KNKTE+EIALLRQ
Sbjct: 109 SYDNYCSLFQVVLHGVVNMQLPNQWLWDMVDEFVYQFQSFCQFRAKLKNKTEEEIALLRQ 168

Query: 121 FDQAWNVYGVLNYLQALVEKSAIIQILEQEKEGLEQFTATDGYDYNGGSNVLKVLGYFSM 180
            D+AWNVYGVLN+LQALVEKS IIQILE +K+GLE FT TDGYD++GGSNVLKVLGYFSM
Sbjct: 169 HDKAWNVYGVLNFLQALVEKSCIIQILEHDKDGLE-FTETDGYDFSGGSNVLKVLGYFSM 227

Query: 181 VGLLRVHCLLGDYHTGLKCLLPIDITQQGVYTSVIGSHITTIYHYGFANLMLRSLFYRYV 240
           VGLLRVHCLLGDYHT LK L PIDITQ GVYTSVIG HI TIYHYGFA LMLR    RYV
Sbjct: 228 VGLLRVHCLLGDYHTALKWLQPIDITQPGVYTSVIGCHIATIYHYGFATLMLR----RYV 283

Query: 241 EAIREFNKILLYIYKTKQYHNKSPQYEQILKKNEQMYALLAICLSLCPQSRLVDETVNSQ 300
           +A+REFNKILLYI+KTKQYH KSPQYEQ+LKKNEQMYALLA+ LSLCPQ++LVDE+VNSQ
Sbjct: 284 DAVREFNKILLYIFKTKQYHQKSPQYEQLLKKNEQMYALLALSLSLCPQTKLVDESVNSQ 343

Query: 301 LREKYGEKMGRMQRYDDEAFAMYDELFSYACPKFITPSA-PSFDEPLVNYNQ 351
           LR+KYGEKM RM R DDEAF +YDELFSYACPKFITPSA P+F+EPLVNYNQ
Sbjct: 344 LRDKYGEKMMRMLRSDDEAFGIYDELFSYACPKFITPSAPPTFEEPLVNYNQ 395


>AT5G25754.1 | Symbols:  | RNA polymerase I-associated factor PAF67
           | chr5:8953564-8955511 FORWARD LENGTH=514
          Length = 514

 Score =  588 bits (1516), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 291/352 (82%), Positives = 320/352 (90%), Gaps = 6/352 (1%)

Query: 1   MYETSFQTLSERLFKDTPWPSVDAGAHYGDNDNAFCLLYREMRCRHLYARLTPKLRQRIE 60
           M ETSFQ++SERLFKDTPWPSV+A A Y DND+ FCLLYREM  RHLYARL+P L+QRI+
Sbjct: 49  MCETSFQSISERLFKDTPWPSVEAIAPYVDNDHVFCLLYREMWFRHLYARLSPTLKQRID 108

Query: 61  SWDNYCPLFQVVLHGVVNMQLPNQWLWDMVDEFVYQFQSFCQYRAKMKNKTEQEIALLRQ 120
           S+DNYC LFQVVLHGVVNMQLPNQWLWDMVDEFVYQFQSFCQ+RAK+KNKTE+EIALLRQ
Sbjct: 109 SYDNYCSLFQVVLHGVVNMQLPNQWLWDMVDEFVYQFQSFCQFRAKLKNKTEEEIALLRQ 168

Query: 121 FDQAWNVYGVLNYLQALVEKSAIIQILEQEKEGLEQFTATDGYDYNGGSNVLKVLGYFSM 180
            D+AWNVYGVLN+LQALVEKS IIQILE +K+GLE FT TDGYD++GGSNVLKVLGYFSM
Sbjct: 169 HDKAWNVYGVLNFLQALVEKSCIIQILEHDKDGLE-FTETDGYDFSGGSNVLKVLGYFSM 227

Query: 181 VGLLRVHCLLGDYHTGLKCLLPIDITQQGVYTSVIGSHITTIYHYGFANLMLRSLFYRYV 240
           VGLLRVHCLLGDYHT LK L PIDITQ GVYTSVIG HI TIYHYGFA LMLR    RYV
Sbjct: 228 VGLLRVHCLLGDYHTALKWLQPIDITQPGVYTSVIGCHIATIYHYGFATLMLR----RYV 283

Query: 241 EAIREFNKILLYIYKTKQYHNKSPQYEQILKKNEQMYALLAICLSLCPQSRLVDETVNSQ 300
           +A+REFNKILLYI+KTKQYH KSPQYEQ+LKKNEQMYALLA+ LSLCPQ++LVDE+VNSQ
Sbjct: 284 DAVREFNKILLYIFKTKQYHQKSPQYEQLLKKNEQMYALLALSLSLCPQTKLVDESVNSQ 343

Query: 301 LREKYGEKMGRMQRYDDEAFAMYDELFSYACPKFITPSA-PSFDEPLVNYNQ 351
           LR+KYGEKM RM R DDEAF +YDELFSYACPKFITPSA P+F+EPLVNYNQ
Sbjct: 344 LRDKYGEKMMRMLRSDDEAFGIYDELFSYACPKFITPSAPPTFEEPLVNYNQ 395