Miyakogusa Predicted Gene

Lj1g3v2050890.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2050890.2 Non Chatacterized Hit- tr|D8RJ77|D8RJ77_SELML
Putative uncharacterized protein MYB3R1
OS=Selaginella,53.68,3e-17,coiled-coil,NULL; seg,NULL,CUFF.28611.2
         (496 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G32730.2 | Symbols: PC-MYB1, MYB3R-1, ATMYB3R-1, ATMYB3R1 | H...   278   4e-75
AT5G11510.1 | Symbols: MYB3R-4, AtMYB3R4 | myb domain protein 3r...   257   1e-68
AT4G32730.1 | Symbols: PC-MYB1, MYB3R-1, ATMYB3R-1, ATMYB3R1, MY...   191   1e-48
AT5G11510.2 | Symbols: MYB3R-4 | myb domain protein 3r-4 | chr5:...   146   3e-35

>AT4G32730.2 | Symbols: PC-MYB1, MYB3R-1, ATMYB3R-1, ATMYB3R1 |
           Homeodomain-like protein | chr4:15791039-15795643
           FORWARD LENGTH=995
          Length = 995

 Score =  278 bits (712), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 204/511 (39%), Positives = 263/511 (51%), Gaps = 66/511 (12%)

Query: 7   IENDTSSLVPVNSFCHGSDTIQTSNPRDEEPNGHAEQEEAGALCYEPPRFPSLDIPFLSC 66
           I  D+  LVP+NSF   S   +   P D++P     +++ GALCYEPPRFPS DIPF SC
Sbjct: 530 IPKDSLKLVPLNSFSSPSRVNKIYFPIDDKP----AEKDKGALCYEPPRFPSADIPFFSC 585

Query: 67  DLVQSGGDMQQEFSPLGIRQFMMSSMNCLTPFKLWDSPSRDDSPDALLRSAAKTFTATPS 126
           DLV S  D++QE+SP GIRQ M+SSMNC TP +LWDSP  D SPD +L   AK+F+  PS
Sbjct: 586 DLVPSNSDLRQEYSPFGIRQLMISSMNCTTPLRLWDSPCHDRSPDVMLNDTAKSFSGAPS 645

Query: 127 ILKKRSRDLLSPLSDKRIDKKLEVDMTSTLIKNFSRLDVMFVDNETQHLLSPA-SVEKLN 185
           ILKKR RDLLSP+ D+R DKKL+   TS+L  +FSRLDVM  + +      P+ S E  N
Sbjct: 646 ILKKRHRDLLSPVLDRRKDKKLKRAATSSLANDFSRLDVMLDEGDDCMTSRPSESPEDKN 705

Query: 186 SGTSVEDDRENHREAIKVEQVEEKNESANLXXXXXXXXXXXXXXXXMTEQRPLDIDSKTT 245
              S    R+N   A           SA L                  E  P+D + K T
Sbjct: 706 ICASPSIARDNRNCA-----------SARL----------------YQEMIPIDEEPKET 738

Query: 246 NNVNIVAVTMPQPSGILVDHDT---NDQLLHSPRGGSKSERVQSSSARKQKNPCTKVNSP 302
             +    VT  Q      D      NDQ       GS  E    S    +  P  KVN+ 
Sbjct: 739 --LESGGVTSMQNENGCNDGGASAKNDQ----ETSGSFFELRLCSPGMTRARPDNKVNAS 792

Query: 303 CIRAKEHERLSVA-----------VTCVQSVCSSGPGESSGDHTANDGAFETYSIFAGTP 351
                   ++S+            +  V S+  S   +++   T+ D   E ++IF GTP
Sbjct: 793 AKDLSNQHKISLGDFPTEEMSSEPLCTVDSIPLSAIDKTNTAETSFD--IENFNIFDGTP 850

Query: 352 FRKSLESPSAWKSPAAWKSPWFVNAFLSSPRPGTELTIEDFGYLLSPGDRSYDAIGLMKQ 411
           FRK L++PS WKSP          +FL SP+   E+T ED G  +SPG+RSYDAIGLMK 
Sbjct: 851 FRKLLDTPSPWKSPL------LFGSFLQSPKLPPEITFEDIGCFMSPGERSYDAIGLMKH 904

Query: 412 VSEQTAVQYANAHEILENQTHKALLP-----RDASGXXXXXXXXXXXXXXXXVERRILDF 466
           +SE +A  YA+A E+L N T +++L      +   G                VE R LDF
Sbjct: 905 LSEHSATAYADALEVLGNDTPESILKKRQLNKSIQGKENQHQPHDQLGNRSQVECRALDF 964

Query: 467 SECETPGDDKSKSS-GVTFSSPSSYLLKGCR 496
           S+C TPG  K  S+    +SSPSSYLLK CR
Sbjct: 965 SDCGTPGKAKVPSASPGGYSSPSSYLLKSCR 995


>AT5G11510.1 | Symbols: MYB3R-4, AtMYB3R4 | myb domain protein 3r-4
           | chr5:3680452-3684684 FORWARD LENGTH=961
          Length = 961

 Score =  257 bits (657), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 177/492 (35%), Positives = 256/492 (52%), Gaps = 50/492 (10%)

Query: 9   NDTSSLVPVNSFCHGSDTIQTSNPRDEEPNGHAEQEEAGALCYEPPRFPSLDIPFLSCDL 68
           ND   LVPVN F   ++    S P+  EPN   EQ            FPS D+P  +CDL
Sbjct: 516 NDPKKLVPVNDFASLAEDRPHSLPK-HEPNMTNEQHHEDMGASSSLGFPSFDLPVFNCDL 574

Query: 69  VQSGGDMQQEFSPLGIRQFMMSSMNCLTPFKLWDSPSRDDSPDALLRSAAKTFTATPSIL 128
           +QS  D   ++SPLGIR+ +MS+M C++P +LW+SP           +  KT     SIL
Sbjct: 575 LQSKNDPLHDYSPLGIRKLLMSTMTCMSPLRLWESP-----------TGKKTLVGAQSIL 623

Query: 129 KKRSRDLLSPLSDKRIDKKLEVDMTSTLIKNFSRLDVMFVDNETQHLLSPASVEKLNSGT 188
           +KR+RDLL+PLS+KR DKKLE+D+ ++L K+FSRLDVMF  +ET++  S       NS  
Sbjct: 624 RKRTRDLLTPLSEKRSDKKLEIDIAASLAKDFSRLDVMF--DETENRQSNFG----NSTG 677

Query: 189 SVEDDRENHREAIKVEQVEEKNESANLXXXXX-XXXXXXXXXXXMTEQRPLDIDSKTTNN 247
            +  DRENH   +  +  E   + ++L                   +Q  ++ + +  ++
Sbjct: 678 VIHGDRENHFHILNGDGEEWSGKPSSLFSHRMPEETMHIRKSLEKVDQICMEANVREKDD 737

Query: 248 VNIVAVTMPQPSGILVDHDTNDQLLHSP-RGGSKSERVQSSSARKQKNPCTKVNSPCIRA 306
                  +   SGIL +H+T   +L +P +  +K+E+ Q S+ R Q        S     
Sbjct: 738 SEQDVENVEFFSGILSEHNTGKPVLSTPGQSVTKAEKAQVSTPRNQLQRTLMATS----N 793

Query: 307 KEHERLSVAVTCVQSVCSSGPGESSGDHTANDGAFETYSIFAGTPFRKSLESPSAWKSPA 366
           KEH   S     + S   +   E  G    N  + E +SIF GTPFR+ LESPS      
Sbjct: 794 KEHHSPSSVCLVINSPSRARNKE--GHLVDNGTSNENFSIFCGTPFRRGLESPS------ 845

Query: 367 AWKSPWFVNAFLSSPRPGTELTIEDFGYLLSPGDRSYDAIGLMKQVSEQTA--VQYANAH 424
           AWKSP+++N+ L SPR  T+LTIED GY+ SPG+RSY++IG+M Q++E T+    +A+A 
Sbjct: 846 AWKSPFYINSLLPSPRFDTDLTIEDMGYIFSPGERSYESIGVMTQINEHTSAFAAFADAM 905

Query: 425 EILENQTHKALLPRDASGXXXXXXXXXXXXXXXXVERRILDFSECETPGDDKSKSSGVTF 484
           E+  + T+      DA                   ERR+LDF++CE+P     +      
Sbjct: 906 EVSISPTND-----DA---RQKKELDKENNDPLLAERRVLDFNDCESPIKATEEV----- 952

Query: 485 SSPSSYLLKGCR 496
              SSYLLKGCR
Sbjct: 953 ---SSYLLKGCR 961


>AT4G32730.1 | Symbols: PC-MYB1, MYB3R-1, ATMYB3R-1, ATMYB3R1,
           MYB3R1 | Homeodomain-like protein |
           chr4:15791039-15794252 FORWARD LENGTH=776
          Length = 776

 Score =  191 bits (484), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 93/161 (57%), Positives = 114/161 (70%), Gaps = 4/161 (2%)

Query: 7   IENDTSSLVPVNSFCHGSDTIQTSNPRDEEPNGHAEQEEAGALCYEPPRFPSLDIPFLSC 66
           I  D+  LVP+NSF   S   +   P D++P     +++ GALCYEPPRFPS DIPF SC
Sbjct: 530 IPKDSLKLVPLNSFSSPSRVNKIYFPIDDKP----AEKDKGALCYEPPRFPSADIPFFSC 585

Query: 67  DLVQSGGDMQQEFSPLGIRQFMMSSMNCLTPFKLWDSPSRDDSPDALLRSAAKTFTATPS 126
           DLV S  D++QE+SP GIRQ M+SSMNC TP +LWDSP  D SPD +L   AK+F+  PS
Sbjct: 586 DLVPSNSDLRQEYSPFGIRQLMISSMNCTTPLRLWDSPCHDRSPDVMLNDTAKSFSGAPS 645

Query: 127 ILKKRSRDLLSPLSDKRIDKKLEVDMTSTLIKNFSRLDVMF 167
           ILKKR RDLLSP+ D+R DKKL+   TS+L  +FSRLDVM 
Sbjct: 646 ILKKRHRDLLSPVLDRRKDKKLKRAATSSLANDFSRLDVML 686


>AT5G11510.2 | Symbols: MYB3R-4 | myb domain protein 3r-4 |
           chr5:3680452-3683633 FORWARD LENGTH=798
          Length = 798

 Score =  146 bits (369), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 83/189 (43%), Positives = 112/189 (59%), Gaps = 18/189 (9%)

Query: 9   NDTSSLVPVNSFCHGSDTIQTSNPRDEEPNGHAEQEEAGALCYEPPRFPSLDIPFLSCDL 68
           ND   LVPVN F   ++    S P+  EPN   EQ            FPS D+P  +CDL
Sbjct: 516 NDPKKLVPVNDFASLAEDRPHSLPK-HEPNMTNEQHHEDMGASSSLGFPSFDLPVFNCDL 574

Query: 69  VQSGGDMQQEFSPLGIRQFMMSSMNCLTPFKLWDSPSRDDSPDALLRSAAKTFTATPSIL 128
           +QS  D   ++SPLGIR+ +MS+M C++P +LW+SP           +  KT     SIL
Sbjct: 575 LQSKNDPLHDYSPLGIRKLLMSTMTCMSPLRLWESP-----------TGKKTLVGAQSIL 623

Query: 129 KKRSRDLLSPLSDKRIDKKLEVDMTSTLIKNFSRLDVMFVDNETQHLLSPASVEKLNSGT 188
           +KR+RDLL+PLS+KR DKKLE+D+ ++L K+FSRLDVMF  +ET++  S       NS  
Sbjct: 624 RKRTRDLLTPLSEKRSDKKLEIDIAASLAKDFSRLDVMF--DETENRQSNFG----NSTG 677

Query: 189 SVEDDRENH 197
            +  DRENH
Sbjct: 678 VIHGDRENH 686