Miyakogusa Predicted Gene

Lj1g3v2038800.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2038800.1 tr|Q54TG6|Q54TG6_DICDI Lupus La protein
OS=Dictyostelium discoideum GN=DDB_0204655 PE=4
SV=1,34.48,4e-19,RNA-BINDING PROTEIN-RELATED,NULL; LUPUS LA
PROTEIN-RELATED,NULL; "Winged helix" DNA-binding domain,N,CUFF.28606.1
         (225 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G32720.1 | Symbols: AtLa1, La1 | La protein 1 | chr4:15787313...   274   3e-74
AT4G32720.2 | Symbols: AtLa1, La1 | La protein 1 | chr4:15787313...   274   4e-74
AT1G79880.1 | Symbols:  | RNA recognition motif (RRM)-containing...   238   3e-63
AT1G79880.3 | Symbols:  | RNA recognition motif (RRM)-containing...   167   8e-42
AT1G79880.2 | Symbols:  | RNA recognition motif (RRM)-containing...   166   8e-42
AT2G43970.1 | Symbols:  | RNA-binding protein | chr2:18205535-18...    76   1e-14
AT2G43970.2 | Symbols:  | RNA-binding protein | chr2:18205535-18...    76   2e-14
AT5G46250.2 | Symbols:  | RNA-binding protein | chr5:18755388-18...    69   3e-12
AT5G46250.3 | Symbols:  | RNA-binding protein | chr5:18755388-18...    69   3e-12
AT5G46250.1 | Symbols:  | RNA-binding protein | chr5:18755388-18...    69   3e-12
AT3G19090.1 | Symbols:  | RNA-binding protein | chr3:6601466-660...    57   1e-08

>AT4G32720.1 | Symbols: AtLa1, La1 | La protein 1 |
           chr4:15787313-15789683 FORWARD LENGTH=433
          Length = 433

 Score =  274 bits (701), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 132/223 (59%), Positives = 170/223 (76%), Gaps = 2/223 (0%)

Query: 1   MATPTTLNEETTKKVIRQVEFYFSDSNLPKDNFMRKTVSESEDGMVSLALLCSFNRMRQH 60
           M+ P  L EET K V+RQVEFYFSDSNLP D+F++KTV+ESEDG+VSLAL+CSF++MR +
Sbjct: 1   MSIPC-LTEETAKTVLRQVEFYFSDSNLPIDDFLKKTVTESEDGLVSLALICSFSKMRGY 59

Query: 61  LNLGDVKAEDVTEDTVKAVAHVLRNSASLKVSEDGKKVGRTTELPKTEEVIEQVDIRTIA 120
           L LGD K +D+ EDT+KAVA  LR S++LK+S+DGKKVGR+TEL K E++IEQ++ RT+A
Sbjct: 60  LKLGDSKGDDIPEDTIKAVADTLRTSSALKISDDGKKVGRSTELLKLEDLIEQLNARTVA 119

Query: 121 ASPFQYDLKLEDVETFFSQYAKVNSVRLPRHVGDKKFFCGTALIEFSSXXXXXXXXXXXX 180
           ASPF YD+K EDVE+FFSQY KVNSVR+PRHV + + F G AL+EF +            
Sbjct: 120 ASPFSYDVKREDVESFFSQYGKVNSVRMPRHVAESRIFSGVALVEFPTEEDAQNVMKQNL 179

Query: 181 XYAGAELELKPKKDFDAERQKELEEYEKSHPSTGS-NHQNNSD 222
            +AG ELELKPKK+FD ER+K+  ++    P  GS N +N SD
Sbjct: 180 VFAGQELELKPKKEFDNEREKDEVKFANYQPQKGSANQKNGSD 222


>AT4G32720.2 | Symbols: AtLa1, La1 | La protein 1 |
           chr4:15787313-15789498 FORWARD LENGTH=404
          Length = 404

 Score =  274 bits (700), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 132/223 (59%), Positives = 170/223 (76%), Gaps = 2/223 (0%)

Query: 1   MATPTTLNEETTKKVIRQVEFYFSDSNLPKDNFMRKTVSESEDGMVSLALLCSFNRMRQH 60
           M+ P  L EET K V+RQVEFYFSDSNLP D+F++KTV+ESEDG+VSLAL+CSF++MR +
Sbjct: 1   MSIPC-LTEETAKTVLRQVEFYFSDSNLPIDDFLKKTVTESEDGLVSLALICSFSKMRGY 59

Query: 61  LNLGDVKAEDVTEDTVKAVAHVLRNSASLKVSEDGKKVGRTTELPKTEEVIEQVDIRTIA 120
           L LGD K +D+ EDT+KAVA  LR S++LK+S+DGKKVGR+TEL K E++IEQ++ RT+A
Sbjct: 60  LKLGDSKGDDIPEDTIKAVADTLRTSSALKISDDGKKVGRSTELLKLEDLIEQLNARTVA 119

Query: 121 ASPFQYDLKLEDVETFFSQYAKVNSVRLPRHVGDKKFFCGTALIEFSSXXXXXXXXXXXX 180
           ASPF YD+K EDVE+FFSQY KVNSVR+PRHV + + F G AL+EF +            
Sbjct: 120 ASPFSYDVKREDVESFFSQYGKVNSVRMPRHVAESRIFSGVALVEFPTEEDAQNVMKQNL 179

Query: 181 XYAGAELELKPKKDFDAERQKELEEYEKSHPSTGS-NHQNNSD 222
            +AG ELELKPKK+FD ER+K+  ++    P  GS N +N SD
Sbjct: 180 VFAGQELELKPKKEFDNEREKDEVKFANYQPQKGSANQKNGSD 222


>AT1G79880.1 | Symbols:  | RNA recognition motif (RRM)-containing
           protein | chr1:30046222-30048336 REVERSE LENGTH=399
          Length = 399

 Score =  238 bits (606), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 113/205 (55%), Positives = 152/205 (74%)

Query: 5   TTLNEETTKKVIRQVEFYFSDSNLPKDNFMRKTVSESEDGMVSLALLCSFNRMRQHLNLG 64
           ++ NEET KK++ QVEFYFSDSNLP D F+ + V++S+DG+VSL L+CSF+RMR  L LG
Sbjct: 3   SSFNEETAKKLLTQVEFYFSDSNLPTDGFLNREVTKSKDGLVSLPLVCSFSRMRNLLGLG 62

Query: 65  DVKAEDVTEDTVKAVAHVLRNSASLKVSEDGKKVGRTTELPKTEEVIEQVDIRTIAASPF 124
           ++  ED+    V+ VA++LR S  LKVS +G+++GR T+L K EEV+EQV  RT+AASPF
Sbjct: 63  NINREDIPPRIVEEVANLLRTSDFLKVSNNGQRIGRGTKLSKPEEVLEQVHRRTLAASPF 122

Query: 125 QYDLKLEDVETFFSQYAKVNSVRLPRHVGDKKFFCGTALIEFSSXXXXXXXXXXXXXYAG 184
           +Y +K+EDV +FFSQYAKVNSVRLP ++ DK+ FCGTAL+EFSS             YAG
Sbjct: 123 EYSIKMEDVSSFFSQYAKVNSVRLPPNIADKRRFCGTALVEFSSEQDTQDILRQSLVYAG 182

Query: 185 AELELKPKKDFDAERQKELEEYEKS 209
           A+L L PK DFD +R+  +++  KS
Sbjct: 183 ADLVLIPKSDFDCQRENMIKQLGKS 207


>AT1G79880.3 | Symbols:  | RNA recognition motif (RRM)-containing
           protein | chr1:30046222-30048014 REVERSE LENGTH=357
          Length = 357

 Score =  167 bits (422), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 81/153 (52%), Positives = 108/153 (70%)

Query: 57  MRQHLNLGDVKAEDVTEDTVKAVAHVLRNSASLKVSEDGKKVGRTTELPKTEEVIEQVDI 116
           MR  L LG++  ED+    V+ VA++LR S  LKVS +G+++GR T+L K EEV+EQV  
Sbjct: 1   MRNLLGLGNINREDIPPRIVEEVANLLRTSDFLKVSNNGQRIGRGTKLSKPEEVLEQVHR 60

Query: 117 RTIAASPFQYDLKLEDVETFFSQYAKVNSVRLPRHVGDKKFFCGTALIEFSSXXXXXXXX 176
           RT+AASPF+Y +K+EDV +FFSQYAKVNSVRLP ++ DK+ FCGTAL+EFSS        
Sbjct: 61  RTLAASPFEYSIKMEDVSSFFSQYAKVNSVRLPPNIADKRRFCGTALVEFSSEQDTQDIL 120

Query: 177 XXXXXYAGAELELKPKKDFDAERQKELEEYEKS 209
                YAGA+L L PK DFD +R+  +++  KS
Sbjct: 121 RQSLVYAGADLVLIPKSDFDCQRENMIKQLGKS 153


>AT1G79880.2 | Symbols:  | RNA recognition motif (RRM)-containing
           protein | chr1:30046222-30048014 REVERSE LENGTH=345
          Length = 345

 Score =  166 bits (421), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 81/153 (52%), Positives = 108/153 (70%)

Query: 57  MRQHLNLGDVKAEDVTEDTVKAVAHVLRNSASLKVSEDGKKVGRTTELPKTEEVIEQVDI 116
           MR  L LG++  ED+    V+ VA++LR S  LKVS +G+++GR T+L K EEV+EQV  
Sbjct: 1   MRNLLGLGNINREDIPPRIVEEVANLLRTSDFLKVSNNGQRIGRGTKLSKPEEVLEQVHR 60

Query: 117 RTIAASPFQYDLKLEDVETFFSQYAKVNSVRLPRHVGDKKFFCGTALIEFSSXXXXXXXX 176
           RT+AASPF+Y +K+EDV +FFSQYAKVNSVRLP ++ DK+ FCGTAL+EFSS        
Sbjct: 61  RTLAASPFEYSIKMEDVSSFFSQYAKVNSVRLPPNIADKRRFCGTALVEFSSEQDTQDIL 120

Query: 177 XXXXXYAGAELELKPKKDFDAERQKELEEYEKS 209
                YAGA+L L PK DFD +R+  +++  KS
Sbjct: 121 RQSLVYAGADLVLIPKSDFDCQRENMIKQLGKS 153


>AT2G43970.1 | Symbols:  | RNA-binding protein |
           chr2:18205535-18208031 REVERSE LENGTH=545
          Length = 545

 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 76/143 (53%), Gaps = 14/143 (9%)

Query: 5   TTLNEETTKKVIRQVEFYFSDSNLPKDNFMRKTVSESEDGMVSLALLCSFNRMRQHLNLG 64
           T L E++ +K++ QVE+YFSD NL   + + + + +  +G V + ++ SF +++  +N  
Sbjct: 187 TGLPEDSIQKIVNQVEYYFSDLNLATTDHLMRFICKDPEGYVPIHVVASFKKIKAVIN-- 244

Query: 65  DVKAEDVTEDTVKAVAHVLRNSASLKVSEDGKKVGRTTELPKTEEVIEQVDIRTIAASPF 124
                         +A VL+NSA L VSEDGKKV R +  P TE  IE++  R I A   
Sbjct: 245 ----------NNSQLAAVLQNSAKLFVSEDGKKVRRIS--PITESAIEELQSRIIVAENL 292

Query: 125 QYDLKLEDVETFFSQYAKVNSVR 147
             D   +++   FS    V ++R
Sbjct: 293 PEDHCYQNLMKIFSTVGSVKNIR 315


>AT2G43970.2 | Symbols:  | RNA-binding protein |
           chr2:18205535-18208031 REVERSE LENGTH=529
          Length = 529

 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 76/143 (53%), Gaps = 14/143 (9%)

Query: 5   TTLNEETTKKVIRQVEFYFSDSNLPKDNFMRKTVSESEDGMVSLALLCSFNRMRQHLNLG 64
           T L E++ +K++ QVE+YFSD NL   + + + + +  +G V + ++ SF +++  +N  
Sbjct: 187 TGLPEDSIQKIVNQVEYYFSDLNLATTDHLMRFICKDPEGYVPIHVVASFKKIKAVIN-- 244

Query: 65  DVKAEDVTEDTVKAVAHVLRNSASLKVSEDGKKVGRTTELPKTEEVIEQVDIRTIAASPF 124
                         +A VL+NSA L VSEDGKKV R +  P TE  IE++  R I A   
Sbjct: 245 ----------NNSQLAAVLQNSAKLFVSEDGKKVRRIS--PITESAIEELQSRIIVAENL 292

Query: 125 QYDLKLEDVETFFSQYAKVNSVR 147
             D   +++   FS    V ++R
Sbjct: 293 PEDHCYQNLMKIFSTVGSVKNIR 315


>AT5G46250.2 | Symbols:  | RNA-binding protein |
           chr5:18755388-18757723 FORWARD LENGTH=340
          Length = 340

 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 80/166 (48%), Gaps = 24/166 (14%)

Query: 9   EETTKKVIRQVEFYFSDSNLPKDNFMRKTVSESEDGMVSLALLCSFNRMRQHLNLGDVKA 68
           +E  +K+IRQVE+YFSD NLP D F+   +  ++ G V ++ + +F++M++         
Sbjct: 101 DELNQKIIRQVEYYFSDENLPTDKFLLNAMKRNKKGFVPISTIATFHKMKK--------- 151

Query: 69  EDVTEDTVKAVAHVLRNSASLKVSEDGKKVGRTTELPKTEEVIEQVDIRTIAASPFQYDL 128
             +T D    V+  L+ S+ L VS D KKV R + LP+    I    I T+       D 
Sbjct: 152 --LTRDHALIVS-ALKESSFLVVSADEKKVKRLSPLPE----IRDPKIFTVLVENLPEDH 204

Query: 129 KLEDVETFFSQYAKVNSVRL--PRHV------GDKKFFCGTALIEF 166
             E++   F +   + SV +  P  V      G K+ F  T L  F
Sbjct: 205 SNENIREIFGKAGSIKSVSICDPNAVEESEKGGKKENFIRTRLHAF 250


>AT5G46250.3 | Symbols:  | RNA-binding protein |
           chr5:18755388-18757723 FORWARD LENGTH=340
          Length = 340

 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 80/166 (48%), Gaps = 24/166 (14%)

Query: 9   EETTKKVIRQVEFYFSDSNLPKDNFMRKTVSESEDGMVSLALLCSFNRMRQHLNLGDVKA 68
           +E  +K+IRQVE+YFSD NLP D F+   +  ++ G V ++ + +F++M++         
Sbjct: 101 DELNQKIIRQVEYYFSDENLPTDKFLLNAMKRNKKGFVPISTIATFHKMKK--------- 151

Query: 69  EDVTEDTVKAVAHVLRNSASLKVSEDGKKVGRTTELPKTEEVIEQVDIRTIAASPFQYDL 128
             +T D    V+  L+ S+ L VS D KKV R + LP+    I    I T+       D 
Sbjct: 152 --LTRDHALIVS-ALKESSFLVVSADEKKVKRLSPLPE----IRDPKIFTVLVENLPEDH 204

Query: 129 KLEDVETFFSQYAKVNSVRL--PRHV------GDKKFFCGTALIEF 166
             E++   F +   + SV +  P  V      G K+ F  T L  F
Sbjct: 205 SNENIREIFGKAGSIKSVSICDPNAVEESEKGGKKENFIRTRLHAF 250


>AT5G46250.1 | Symbols:  | RNA-binding protein |
           chr5:18755388-18758056 FORWARD LENGTH=422
          Length = 422

 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 80/166 (48%), Gaps = 24/166 (14%)

Query: 9   EETTKKVIRQVEFYFSDSNLPKDNFMRKTVSESEDGMVSLALLCSFNRMRQHLNLGDVKA 68
           +E  +K+IRQVE+YFSD NLP D F+   +  ++ G V ++ + +F++M++         
Sbjct: 101 DELNQKIIRQVEYYFSDENLPTDKFLLNAMKRNKKGFVPISTIATFHKMKK--------- 151

Query: 69  EDVTEDTVKAVAHVLRNSASLKVSEDGKKVGRTTELPKTEEVIEQVDIRTIAASPFQYDL 128
             +T D    V+  L+ S+ L VS D KKV R + LP+    I    I T+       D 
Sbjct: 152 --LTRDHALIVS-ALKESSFLVVSADEKKVKRLSPLPE----IRDPKIFTVLVENLPEDH 204

Query: 129 KLEDVETFFSQYAKVNSVRL--PRHV------GDKKFFCGTALIEF 166
             E++   F +   + SV +  P  V      G K+ F  T L  F
Sbjct: 205 SNENIREIFGKAGSIKSVSICDPNAVEESEKGGKKENFIRTRLHAF 250


>AT3G19090.1 | Symbols:  | RNA-binding protein |
           chr3:6601466-6603709 FORWARD LENGTH=455
          Length = 455

 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 71/140 (50%), Gaps = 24/140 (17%)

Query: 14  KVIRQVEFYFSDSNLPKDNFMRKTVSESEDGMVSLALLCSFNRMR-----QHLNLGDVKA 68
           K+++QVE+ F+D +L  +  + K +S+  +G V ++ + S  +++      HL       
Sbjct: 147 KIVKQVEYQFTDMSLLANESISKHISKDPEGYVPVSYIASTKKIKALTSNHHL------- 199

Query: 69  EDVTEDTVKAVAHVLRNSASLKVSEDGKKVGRTTELPKTEEVIEQVDIRTIAASPFQYDL 128
                     V+  LR+S+ L VSEDGKKV RT++   T+   E++  RT+ A     D 
Sbjct: 200 ----------VSLALRSSSKLVVSEDGKKVKRTSQF--TDRDREELQGRTVVAENLPDDH 247

Query: 129 KLEDVETFFSQYAKVNSVRL 148
             +++E  F     V ++R+
Sbjct: 248 SYQNLEKIFGVVGNVKAIRI 267