Miyakogusa Predicted Gene

Lj1g3v2038790.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2038790.1 tr|G7ZWL9|G7ZWL9_MEDTR C-myb-like transcription
factor OS=Medicago truncatula GN=MTR_042s0013 PE=4
S,76.56,2e-18,Myb_DNA-binding,SANT/Myb domain; no
description,Homeodomain-like; HTH_MYB,Myb domain;
Homeodomain-li,CUFF.28605.1
         (68 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G11510.2 | Symbols: MYB3R-4 | myb domain protein 3r-4 | chr5:...    78   1e-15
AT5G11510.1 | Symbols: MYB3R-4, AtMYB3R4 | myb domain protein 3r...    77   3e-15
AT4G32730.2 | Symbols: PC-MYB1, MYB3R-1, ATMYB3R-1, ATMYB3R1 | H...    71   1e-13
AT4G32730.1 | Symbols: PC-MYB1, MYB3R-1, ATMYB3R-1, ATMYB3R1, MY...    71   2e-13
AT4G00540.1 | Symbols: ATMYB3R2, PC-MYB2, MYB3R-2, MYB3R2 | myb ...    62   6e-11
AT4G00540.2 | Symbols: ATMYB3R2, PC-MYB2, MYB3R-2, MYB3R2 | myb ...    60   3e-10
AT3G09370.2 | Symbols: MYB3R-3 | myb domain protein 3r-3 | chr3:...    56   5e-09
AT3G09370.1 | Symbols: MYB3R-3, AtMYB3R3 | myb domain protein 3r...    56   6e-09
AT2G13960.1 | Symbols:  | Homeodomain-like superfamily protein |...    55   1e-08
AT5G02320.2 | Symbols: MYB3R-5 | myb domain protein 3r-5 | chr5:...    55   1e-08
AT5G02320.1 | Symbols: ATMYB3R5, MYB3R-5 | myb domain protein 3r...    55   1e-08
AT2G13960.2 | Symbols:  | Homeodomain-like superfamily protein |...    54   2e-08

>AT5G11510.2 | Symbols: MYB3R-4 | myb domain protein 3r-4 |
          chr5:3680452-3683633 FORWARD LENGTH=798
          Length = 798

 Score = 78.2 bits (191), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 40/64 (62%), Positives = 45/64 (70%), Gaps = 8/64 (12%)

Query: 1  MEGERLTPAPSEGTVDGVQKIRALHGRTTGPTRRSTKGQWTPEEDEILRNAVHRFKGKNW 60
          ME E  TP       + + K+R  HGRT+GP RRST+GQWT EEDEILR AVH FKGKNW
Sbjct: 1  MEAESSTPQ------ERIPKLR--HGRTSGPARRSTRGQWTAEEDEILRKAVHSFKGKNW 52

Query: 61 KKIG 64
          KKI 
Sbjct: 53 KKIA 56


>AT5G11510.1 | Symbols: MYB3R-4, AtMYB3R4 | myb domain protein
          3r-4 | chr5:3680452-3684684 FORWARD LENGTH=961
          Length = 961

 Score = 76.6 bits (187), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 40/64 (62%), Positives = 45/64 (70%), Gaps = 8/64 (12%)

Query: 1  MEGERLTPAPSEGTVDGVQKIRALHGRTTGPTRRSTKGQWTPEEDEILRNAVHRFKGKNW 60
          ME E  TP       + + K+R  HGRT+GP RRST+GQWT EEDEILR AVH FKGKNW
Sbjct: 1  MEAESSTPQ------ERIPKLR--HGRTSGPARRSTRGQWTAEEDEILRKAVHSFKGKNW 52

Query: 61 KKIG 64
          KKI 
Sbjct: 53 KKIA 56


>AT4G32730.2 | Symbols: PC-MYB1, MYB3R-1, ATMYB3R-1, ATMYB3R1 |
          Homeodomain-like protein | chr4:15791039-15795643
          FORWARD LENGTH=995
          Length = 995

 Score = 71.2 bits (173), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/44 (70%), Positives = 36/44 (81%)

Query: 21 IRALHGRTTGPTRRSTKGQWTPEEDEILRNAVHRFKGKNWKKIG 64
          ++   GRT+GP RRSTKGQWTPEEDE+L  AV RF+GKNWKKI 
Sbjct: 19 LKGKQGRTSGPARRSTKGQWTPEEDEVLCKAVERFQGKNWKKIA 62


>AT4G32730.1 | Symbols: PC-MYB1, MYB3R-1, ATMYB3R-1, ATMYB3R1,
          MYB3R1 | Homeodomain-like protein |
          chr4:15791039-15794252 FORWARD LENGTH=776
          Length = 776

 Score = 70.9 bits (172), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/44 (70%), Positives = 36/44 (81%)

Query: 21 IRALHGRTTGPTRRSTKGQWTPEEDEILRNAVHRFKGKNWKKIG 64
          ++   GRT+GP RRSTKGQWTPEEDE+L  AV RF+GKNWKKI 
Sbjct: 19 LKGKQGRTSGPARRSTKGQWTPEEDEVLCKAVERFQGKNWKKIA 62


>AT4G00540.1 | Symbols: ATMYB3R2, PC-MYB2, MYB3R-2, MYB3R2 | myb
          domain protein 3r2 | chr4:234597-237356 REVERSE
          LENGTH=437
          Length = 437

 Score = 62.4 bits (150), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 30/58 (51%), Positives = 39/58 (67%), Gaps = 4/58 (6%)

Query: 11 SEGTVDGVQKIRALH----GRTTGPTRRSTKGQWTPEEDEILRNAVHRFKGKNWKKIG 64
          S+   D V  I A+     GR +GPTRRSTKG WT EED+IL N V +++G+NWK+I 
Sbjct: 14 SDNNTDDVTPIFAIDDSSKGRVSGPTRRSTKGGWTAEEDQILTNVVKKYQGRNWKRIA 71


>AT4G00540.2 | Symbols: ATMYB3R2, PC-MYB2, MYB3R-2, MYB3R2 | myb
          domain protein 3r2 | chr4:235403-237356 REVERSE
          LENGTH=405
          Length = 405

 Score = 60.1 bits (144), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 29/60 (48%), Positives = 39/60 (65%), Gaps = 6/60 (10%)

Query: 11 SEGTVDGVQKIRAL------HGRTTGPTRRSTKGQWTPEEDEILRNAVHRFKGKNWKKIG 64
          S+   D V  I A+      + R +GPTRRSTKG WT EED+IL N V +++G+NWK+I 
Sbjct: 14 SDNNTDDVTPIFAIDDSSKGYRRVSGPTRRSTKGGWTAEEDQILTNVVKKYQGRNWKRIA 73


>AT3G09370.2 | Symbols: MYB3R-3 | myb domain protein 3r-3 |
           chr3:2879534-2882128 FORWARD LENGTH=510
          Length = 510

 Score = 55.8 bits (133), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 27/39 (69%), Positives = 30/39 (76%), Gaps = 1/39 (2%)

Query: 26  GRTTGPTRRSTKGQWTPEEDEILRNAVHRFKGKNWKKIG 64
           GRT+GP RR+ KG WTPEEDE LR AV  FKGK+WK I 
Sbjct: 73  GRTSGPIRRA-KGGWTPEEDETLRQAVDTFKGKSWKNIA 110


>AT3G09370.1 | Symbols: MYB3R-3, AtMYB3R3 | myb domain protein 3r-3
           | chr3:2879534-2882128 FORWARD LENGTH=505
          Length = 505

 Score = 55.8 bits (133), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 27/39 (69%), Positives = 30/39 (76%), Gaps = 1/39 (2%)

Query: 26  GRTTGPTRRSTKGQWTPEEDEILRNAVHRFKGKNWKKIG 64
           GRT+GP RR+ KG WTPEEDE LR AV  FKGK+WK I 
Sbjct: 68  GRTSGPIRRA-KGGWTPEEDETLRQAVDTFKGKSWKNIA 105


>AT2G13960.1 | Symbols:  | Homeodomain-like superfamily protein |
           chr2:5859683-5861105 FORWARD LENGTH=150
          Length = 150

 Score = 55.1 bits (131), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 26/44 (59%), Positives = 32/44 (72%), Gaps = 1/44 (2%)

Query: 21  IRALHGRTTGPTRRSTKGQWTPEEDEILRNAVHRFKGKNWKKIG 64
           + +   RT+GP RR+ KG WTPEEDE LR AV ++KGK WKKI 
Sbjct: 60  VSSFPRRTSGPMRRA-KGGWTPEEDETLRRAVEKYKGKRWKKIA 102


>AT5G02320.2 | Symbols: MYB3R-5 | myb domain protein 3r-5 |
           chr5:483445-486347 REVERSE LENGTH=548
          Length = 548

 Score = 54.7 bits (130), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 26/44 (59%), Positives = 32/44 (72%), Gaps = 1/44 (2%)

Query: 21  IRALHGRTTGPTRRSTKGQWTPEEDEILRNAVHRFKGKNWKKIG 64
           + +   RT+GP RR+ KG WTPEEDE LR AV ++KGK WKKI 
Sbjct: 60  VSSFPRRTSGPMRRA-KGGWTPEEDETLRRAVEKYKGKRWKKIA 102


>AT5G02320.1 | Symbols: ATMYB3R5, MYB3R-5 | myb domain protein 3r-5
           | chr5:483445-486347 REVERSE LENGTH=548
          Length = 548

 Score = 54.7 bits (130), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 26/44 (59%), Positives = 32/44 (72%), Gaps = 1/44 (2%)

Query: 21  IRALHGRTTGPTRRSTKGQWTPEEDEILRNAVHRFKGKNWKKIG 64
           + +   RT+GP RR+ KG WTPEEDE LR AV ++KGK WKKI 
Sbjct: 60  VSSFPRRTSGPMRRA-KGGWTPEEDETLRRAVEKYKGKRWKKIA 102


>AT2G13960.2 | Symbols:  | Homeodomain-like superfamily protein |
          chr2:5860304-5861105 FORWARD LENGTH=115
          Length = 115

 Score = 53.9 bits (128), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 35/54 (64%), Gaps = 1/54 (1%)

Query: 11 SEGTVDGVQKIRALHGRTTGPTRRSTKGQWTPEEDEILRNAVHRFKGKNWKKIG 64
          +E  +     +  +  RT+GP RR+ KG WTPEEDE LR AV ++KGK WKKI 
Sbjct: 15 TELILGFCNVLMLICRRTSGPMRRA-KGGWTPEEDETLRRAVEKYKGKRWKKIA 67