Miyakogusa Predicted Gene
- Lj1g3v2036590.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v2036590.1 tr|A9T5D1|A9T5D1_PHYPA Predicted protein
(Fragment) OS=Physcomitrella patens subsp. patens
GN=PHYPAD,48.94,2e-16,"Winged helix" DNA-binding domain,NULL;
La,RNA-binding protein Lupus La; no description,Winged
helix,gene.Ljchr1_pseudomol_20120830.path1.gene4765.1
(98 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G32720.1 | Symbols: AtLa1, La1 | La protein 1 | chr4:15787313... 136 3e-33
AT4G32720.2 | Symbols: AtLa1, La1 | La protein 1 | chr4:15787313... 136 4e-33
AT1G79880.1 | Symbols: | RNA recognition motif (RRM)-containing... 105 6e-24
AT1G79880.3 | Symbols: | RNA recognition motif (RRM)-containing... 77 2e-15
AT1G79880.2 | Symbols: | RNA recognition motif (RRM)-containing... 77 2e-15
AT2G43970.1 | Symbols: | RNA-binding protein | chr2:18205535-18... 48 1e-06
AT2G43970.2 | Symbols: | RNA-binding protein | chr2:18205535-18... 48 1e-06
>AT4G32720.1 | Symbols: AtLa1, La1 | La protein 1 |
chr4:15787313-15789683 FORWARD LENGTH=433
Length = 433
Score = 136 bits (342), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 61/94 (64%), Positives = 82/94 (87%)
Query: 1 MRKTVSESEDGMVSLALLCSFNRMRQHLNLGDVKAEDVTEDTVKAVAHVLRNSASLKVSE 60
++KTV+ESEDG+VSLAL+CSF++MR +L LGD K +D+ EDT+KAVA LR S++LK+S+
Sbjct: 33 LKKTVTESEDGLVSLALICSFSKMRGYLKLGDSKGDDIPEDTIKAVADTLRTSSALKISD 92
Query: 61 DGKKVGRTTELPKTEEVIEQVDIRTIAASPFQYD 94
DGKKVGR+TEL K E++IEQ++ RT+AASPF YD
Sbjct: 93 DGKKVGRSTELLKLEDLIEQLNARTVAASPFSYD 126
>AT4G32720.2 | Symbols: AtLa1, La1 | La protein 1 |
chr4:15787313-15789498 FORWARD LENGTH=404
Length = 404
Score = 136 bits (342), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 61/94 (64%), Positives = 82/94 (87%)
Query: 1 MRKTVSESEDGMVSLALLCSFNRMRQHLNLGDVKAEDVTEDTVKAVAHVLRNSASLKVSE 60
++KTV+ESEDG+VSLAL+CSF++MR +L LGD K +D+ EDT+KAVA LR S++LK+S+
Sbjct: 33 LKKTVTESEDGLVSLALICSFSKMRGYLKLGDSKGDDIPEDTIKAVADTLRTSSALKISD 92
Query: 61 DGKKVGRTTELPKTEEVIEQVDIRTIAASPFQYD 94
DGKKVGR+TEL K E++IEQ++ RT+AASPF YD
Sbjct: 93 DGKKVGRSTELLKLEDLIEQLNARTVAASPFSYD 126
>AT1G79880.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr1:30046222-30048336 REVERSE LENGTH=399
Length = 399
Score = 105 bits (262), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 49/93 (52%), Positives = 71/93 (76%)
Query: 1 MRKTVSESEDGMVSLALLCSFNRMRQHLNLGDVKAEDVTEDTVKAVAHVLRNSASLKVSE 60
+ + V++S+DG+VSL L+CSF+RMR L LG++ ED+ V+ VA++LR S LKVS
Sbjct: 32 LNREVTKSKDGLVSLPLVCSFSRMRNLLGLGNINREDIPPRIVEEVANLLRTSDFLKVSN 91
Query: 61 DGKKVGRTTELPKTEEVIEQVDIRTIAASPFQY 93
+G+++GR T+L K EEV+EQV RT+AASPF+Y
Sbjct: 92 NGQRIGRGTKLSKPEEVLEQVHRRTLAASPFEY 124
>AT1G79880.3 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr1:30046222-30048014 REVERSE LENGTH=357
Length = 357
Score = 77.4 bits (189), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 51/70 (72%)
Query: 24 MRQHLNLGDVKAEDVTEDTVKAVAHVLRNSASLKVSEDGKKVGRTTELPKTEEVIEQVDI 83
MR L LG++ ED+ V+ VA++LR S LKVS +G+++GR T+L K EEV+EQV
Sbjct: 1 MRNLLGLGNINREDIPPRIVEEVANLLRTSDFLKVSNNGQRIGRGTKLSKPEEVLEQVHR 60
Query: 84 RTIAASPFQY 93
RT+AASPF+Y
Sbjct: 61 RTLAASPFEY 70
>AT1G79880.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr1:30046222-30048014 REVERSE LENGTH=345
Length = 345
Score = 77.4 bits (189), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 51/70 (72%)
Query: 24 MRQHLNLGDVKAEDVTEDTVKAVAHVLRNSASLKVSEDGKKVGRTTELPKTEEVIEQVDI 83
MR L LG++ ED+ V+ VA++LR S LKVS +G+++GR T+L K EEV+EQV
Sbjct: 1 MRNLLGLGNINREDIPPRIVEEVANLLRTSDFLKVSNNGQRIGRGTKLSKPEEVLEQVHR 60
Query: 84 RTIAASPFQY 93
RT+AASPF+Y
Sbjct: 61 RTLAASPFEY 70
>AT2G43970.1 | Symbols: | RNA-binding protein |
chr2:18205535-18208031 REVERSE LENGTH=545
Length = 545
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 50/98 (51%), Gaps = 14/98 (14%)
Query: 1 MRKTVSESEDGMVSLALLCSFNRMRQHLNLGDVKAEDVTEDTVKAVAHVLRNSASLKVSE 60
+ + + + +G V + ++ SF +++ +N +A VL+NSA L VSE
Sbjct: 216 LMRFICKDPEGYVPIHVVASFKKIKAVIN------------NNSQLAAVLQNSAKLFVSE 263
Query: 61 DGKKVGRTTELPKTEEVIEQVDIRTIAASPFQYDHSYK 98
DGKKV R + P TE IE++ R I A DH Y+
Sbjct: 264 DGKKVRRIS--PITESAIEELQSRIIVAENLPEDHCYQ 299
>AT2G43970.2 | Symbols: | RNA-binding protein |
chr2:18205535-18208031 REVERSE LENGTH=529
Length = 529
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 14/94 (14%)
Query: 5 VSESEDGMVSLALLCSFNRMRQHLNLGDVKAEDVTEDTVKAVAHVLRNSASLKVSEDGKK 64
+ + +G V + ++ SF +++ +N +A VL+NSA L VSEDGKK
Sbjct: 220 ICKDPEGYVPIHVVASFKKIKAVIN------------NNSQLAAVLQNSAKLFVSEDGKK 267
Query: 65 VGRTTELPKTEEVIEQVDIRTIAASPFQYDHSYK 98
V R + P TE IE++ R I A DH Y+
Sbjct: 268 VRRIS--PITESAIEELQSRIIVAENLPEDHCYQ 299