Miyakogusa Predicted Gene

Lj1g3v2035090.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2035090.1 Non Chatacterized Hit- tr|I3S4X3|I3S4X3_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,99.05,0,PCI/PINT
associated module,PCI/PINT associated module; motif in proteasome
subunits, Int-6, Nip-1 a,,CUFF.28283.1
         (422 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G29150.1 | Symbols: ATS9, RPN6 | non-ATPase subunit 9 | chr1:...   659   0.0  
AT2G26990.1 | Symbols: FUS12, ATCSN2, COP12, CSN2 | proteasome f...    73   5e-13

>AT1G29150.1 | Symbols: ATS9, RPN6 | non-ATPase subunit 9 |
           chr1:10181240-10182499 FORWARD LENGTH=419
          Length = 419

 Score =  659 bits (1700), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/415 (79%), Positives = 353/415 (85%), Gaps = 1/415 (0%)

Query: 8   ATTESVALALEAKDPSEGISILYRVLEDPSSSPEALRMKEQAITNLTDLLRQENRGEDLR 67
           ATTE+++LALEA + SE I+ILY+VLEDPSSSPEA+R+KEQAITNL D L +E RGEDLR
Sbjct: 6   ATTETISLALEA-NSSEAITILYQVLEDPSSSPEAIRIKEQAITNLCDRLTEEKRGEDLR 64

Query: 68  SLLTQLRPFFSLIPKAKTAKIVRGIIDSVAKIPGSSDLQIALCKEMVQWTRAEKRTFLRQ 127
            LLT+LRPFFSLIPKAKTAKIVRGIID+VAKIPG++DLQI LCKEMV+WTRAEKRTFLRQ
Sbjct: 65  KLLTKLRPFFSLIPKAKTAKIVRGIIDAVAKIPGTTDLQITLCKEMVEWTRAEKRTFLRQ 124

Query: 128 RVEARLAALLMETKEYSEALTLLSGLVKXXXXXXXXXXXXXXXXXXXXXHFSLRXXXXXX 187
           RVEARLAALLME KEY EAL LLS LVK                     HFSLR      
Sbjct: 125 RVEARLAALLMENKEYVEALALLSTLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAK 184

Query: 188 XXXXXXXXXXXXIYVPPAQQGAIDLQSGILHAEEKDYKTAYSYFFEAFESFNALEDPKAV 247
                       IYVPPAQQG IDLQSGILHAEEKDYKT YSYFFEAFESFNAL DP+AV
Sbjct: 185 AALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTGYSYFFEAFESFNALGDPRAV 244

Query: 248 FSLKYMLLCKIMVNQADDVGGIISSKAGLQYVGPDLDAMKAVADAHSKRSLKLFETALRN 307
           FSLKYMLLCKIMV+QADDV GIISSKAGLQYVGPDLDAMKAVADAHSKRSLKLFE ALR+
Sbjct: 245 FSLKYMLLCKIMVSQADDVAGIISSKAGLQYVGPDLDAMKAVADAHSKRSLKLFENALRD 304

Query: 308 YKAQLEEDPIVHRHLQSLYGTLMEQNLCRLIEPFSRVEIAHIAELIELPIDHVERKLSQM 367
           YKAQLE+DPIVHRHL SLY TL+EQNLCRLIEPFSRVEIAHIAELI LP+DHVE+KLSQM
Sbjct: 305 YKAQLEDDPIVHRHLSSLYDTLLEQNLCRLIEPFSRVEIAHIAELIGLPLDHVEKKLSQM 364

Query: 368 ILDKKFAGTLDQGAGCLIIFDDPKTDAIYPATLETISNIGKVVDSLYVRSAKIMA 422
           ILDKKFAGTLDQGAGCLIIF+DPK DAIY ATLETI+N+GKVVDSLYVRSAKIM+
Sbjct: 365 ILDKKFAGTLDQGAGCLIIFEDPKADAIYSATLETIANMGKVVDSLYVRSAKIMS 419


>AT2G26990.1 | Symbols: FUS12, ATCSN2, COP12, CSN2 | proteasome
           family protein | chr2:11519684-11522412 REVERSE
           LENGTH=439
          Length = 439

 Score = 72.8 bits (177), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 92/176 (52%), Gaps = 2/176 (1%)

Query: 204 PAQQGAIDLQSGILHAEEKDYKTAYSYFFEAFESFNALEDPKAVFSLKYMLLCKIMVNQA 263
           P   G I    G +H  E+ ++ A + FFEAF++++   + + +  LKY++L  +++   
Sbjct: 227 PRIMGIIRECGGKMHMAERQWEEAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLM--E 284

Query: 264 DDVGGIISSKAGLQYVGPDLDAMKAVADAHSKRSLKLFETALRNYKAQLEEDPIVHRHLQ 323
            +V      +A      P++ AM  +  A+ +  +  FE  L++ +  + +DP +  +++
Sbjct: 285 SEVNPFDGQEAKPYKNDPEILAMTNLIAAYQRNEIIEFERILKSNRRTIMDDPFIRNYME 344

Query: 324 SLYGTLMEQNLCRLIEPFSRVEIAHIAELIELPIDHVERKLSQMILDKKFAGTLDQ 379
            L   +  Q L +LI+P++++ I  I++ + +P   V   L  +ILD +  G +D+
Sbjct: 345 DLLKKVRTQVLLKLIKPYTKIGIPFISKELNVPETDVTELLVSLILDSRIDGHIDE 400