Miyakogusa Predicted Gene

Lj1g3v1991610.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1991610.1 Non Chatacterized Hit- tr|E1Z214|E1Z214_CHLVA
Putative uncharacterized protein OS=Chlorella
variabil,35.61,8e-19,seg,NULL; RNase_H2-Ydr279,Ribonuclease H2,
subunit B; SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NUL,CUFF.28255.1
         (342 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G20325.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...   305   4e-83
AT4G20325.2 | Symbols:  | FUNCTIONS IN: molecular_function unkno...   219   2e-57

>AT4G20325.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           nucleus; CONTAINS InterPro DOMAIN/s: Ribonuclease H2,
           subunit B (InterPro:IPR019024); Has 30201 Blast hits to
           17322 proteins in 780 species: Archae - 12; Bacteria -
           1396; Metazoa - 17338; Fungi - 3422; Plants - 5037;
           Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
           BLink). | chr4:10980124-10982426 FORWARD LENGTH=277
          Length = 277

 Score =  305 bits (780), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 151/276 (54%), Positives = 189/276 (68%), Gaps = 2/276 (0%)

Query: 66  SMSWSNGIQEPRVLVAPDPGIDGNCSGHMILLRHPKTGNGTQYLFVNGALQELQWFKNLY 125
           S  W  G ++ RVL+APD G  GN  G ++ LRHPK+ NGT +LF N  LQELQWFK  Y
Sbjct: 3   STVWWEGAEKTRVLIAPDSGCGGNKPGELLTLRHPKSENGTCFLFNNEMLQELQWFKQSY 62

Query: 126 GSWFLGDYTCEDGRMYLSTPVDPVFIMLPIFEEARMKKRDGDLGNFRQLDEILYIDGYPG 185
           GSWFLGDY  EDG +Y++TPVDPVFI+LPIF+EARMKK +   G FRQLDEIL+++GYPG
Sbjct: 63  GSWFLGDYISEDGSLYMATPVDPVFILLPIFDEARMKKGENS-GKFRQLDEILFVEGYPG 121

Query: 186 YHQLMSTVENCMQVVCEVKEVGSLKFFRLDDSKVLRWLCYKACQLKQTLPKLDKNYAVQS 245
           Y  L+S  E CM++VC+ +EVGS+KF+RLD+SKVL WL  K   LK +LP+LDKNYA Q 
Sbjct: 122 YQHLLSLAEKCMEIVCQTQEVGSMKFYRLDNSKVLAWLSCKIYCLKNSLPELDKNYAAQD 181

Query: 246 EKDTLVDAVSILGEYLKEEPWXXXXXXXXXXXXXEVTGRTQVNTEESSAGLYNESQEPND 305
           EK TLVD+VSI+GEYLK EPW             + T + + N E       N     N 
Sbjct: 182 EKQTLVDSVSIVGEYLKTEPWLKLLYDHLGLKFVDPTMK-ETNMENLPTANENNMASSNS 240

Query: 306 EKKAPIAKKGRQAKKTKLETESHNIKDMFSRASRKK 341
            ++    K G+Q K+ K+ET S NI+DMFSRA +KK
Sbjct: 241 IQEKANKKPGKQTKQAKVETGSKNIRDMFSRACKKK 276


>AT4G20325.2 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           nucleus; CONTAINS InterPro DOMAIN/s: Ribonuclease H2,
           subunit B (InterPro:IPR019024); Has 30201 Blast hits to
           17322 proteins in 780 species: Archae - 12; Bacteria -
           1396; Metazoa - 17338; Fungi - 3422; Plants - 5037;
           Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
           BLink). | chr4:10980124-10981636 FORWARD LENGTH=164
          Length = 164

 Score =  219 bits (559), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 100/161 (62%), Positives = 124/161 (77%), Gaps = 1/161 (0%)

Query: 66  SMSWSNGIQEPRVLVAPDPGIDGNCSGHMILLRHPKTGNGTQYLFVNGALQELQWFKNLY 125
           S  W  G ++ RVL+APD G  GN  G ++ LRHPK+ NGT +LF N  LQELQWFK  Y
Sbjct: 3   STVWWEGAEKTRVLIAPDSGCGGNKPGELLTLRHPKSENGTCFLFNNEMLQELQWFKQSY 62

Query: 126 GSWFLGDYTCEDGRMYLSTPVDPVFIMLPIFEEARMKKRDGDLGNFRQLDEILYIDGYPG 185
           GSWFLGDY  EDG +Y++TPVDPVFI+LPIF+EARMKK +   G FRQLDEIL+++GYPG
Sbjct: 63  GSWFLGDYISEDGSLYMATPVDPVFILLPIFDEARMKKGENS-GKFRQLDEILFVEGYPG 121

Query: 186 YHQLMSTVENCMQVVCEVKEVGSLKFFRLDDSKVLRWLCYK 226
           Y  L+S  E CM++VC+ +EVGS+KF+RLD+SKVL WL  K
Sbjct: 122 YQHLLSLAEKCMEIVCQTQEVGSMKFYRLDNSKVLAWLSCK 162