Miyakogusa Predicted Gene
- Lj1g3v1966230.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v1966230.1 tr|G7JCC9|G7JCC9_MEDTR COP9 signalosome complex
subunit 5b OS=Medicago truncatula GN=MTR_3g108790 PE,97.21,0,JAB/MPN
domain,JAB1/Mov34/MPN/PAD-1; COP9 SIGNALOSOME COMPLEX SUBUNIT 5,NULL;
EUKARYOTIC TRANSLATION,CUFF.28211.1
(358 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G71230.1 | Symbols: CSN5B, CSN5, AJH2 | COP9-signalosome 5B |... 584 e-167
AT1G22920.1 | Symbols: CSN5A, JAB1, AJH1 | COP9 signalosome 5A |... 579 e-166
AT1G22920.2 | Symbols: CSN5A, JAB1, AJH1 | COP9 signalosome 5A |... 547 e-156
AT5G23540.1 | Symbols: | Mov34/MPN/PAD-1 family protein | chr5:... 132 4e-31
AT5G23540.2 | Symbols: | Mov34/MPN/PAD-1 family protein | chr5:... 110 1e-24
AT1G80210.2 | Symbols: BRCC36A, AtBRCC36A | Mov34/MPN/PAD-1 fami... 52 9e-07
AT1G80210.1 | Symbols: BRCC36A, AtBRCC36A | Mov34/MPN/PAD-1 fami... 51 1e-06
>AT1G71230.1 | Symbols: CSN5B, CSN5, AJH2 | COP9-signalosome 5B |
chr1:26852560-26854255 FORWARD LENGTH=358
Length = 358
Score = 584 bits (1506), Expect = e-167, Method: Compositional matrix adjust.
Identities = 279/350 (79%), Positives = 305/350 (87%), Gaps = 3/350 (0%)
Query: 10 AIAQQTWELENNIIPMDTP--SDDSIFYYDEAGQNEFQREKPWANDPHYFKRVKISALAL 67
IA++TWELEN+I+ +D+P + D+IFYYD+ Q FQ+EKPW NDPHYFKRVKISALAL
Sbjct: 7 TIARKTWELENSILTVDSPDSTSDNIFYYDDTSQTRFQQEKPWENDPHYFKRVKISALAL 66
Query: 68 LKMVVHARSGGTIEVMGLMQGKTDADSIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQ 127
LKMVVHARSGGTIE+MGLMQGKTD D+IIVMDAFALPVEGTETRVNAQ DAYEYMV+YSQ
Sbjct: 67 LKMVVHARSGGTIEIMGLMQGKTDGDTIIVMDAFALPVEGTETRVNAQDDAYEYMVEYSQ 126
Query: 128 TNKQAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVE 187
TNK AGRLENVVGWYHSHPGYGCWLSGIDVSTQ LNQQ QEPFLAVVIDPTRTVSAGKVE
Sbjct: 127 TNKLAGRLENVVGWYHSHPGYGCWLSGIDVSTQRLNQQHQEPFLAVVIDPTRTVSAGKVE 186
Query: 188 IGAFRTYPEGYKPPDEPISEYQTIPLNKIEDFGVHCKQYYSLDITYFKXXXXXXXXXXXW 247
IGAFRTY +GYKPPDEP+SEYQTIPLNKIEDFGVHCKQYYSLD+TYFK W
Sbjct: 187 IGAFRTYSKGYKPPDEPVSEYQTIPLNKIEDFGVHCKQYYSLDVTYFKSSLDSHLLDLLW 246
Query: 248 NKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAENQLAHSRFGSLI-APTPRKKEEESP 306
NKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAE+ L SRFG ++ + +KKE+ES
Sbjct: 247 NKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAESHLVQSRFGGVVPSSLHKKKEDESQ 306
Query: 307 LAKITRDSAKITVEQVHGLMSQVIKDILFNSVHQANKSRTETTSDPEPMI 356
L KITRDSAKITVEQVHGLMSQVIKD LFNS+ Q+N +SDP+PMI
Sbjct: 307 LTKITRDSAKITVEQVHGLMSQVIKDELFNSMRQSNNKSPTDSSDPDPMI 356
>AT1G22920.1 | Symbols: CSN5A, JAB1, AJH1 | COP9 signalosome 5A |
chr1:8109882-8111895 REVERSE LENGTH=357
Length = 357
Score = 579 bits (1493), Expect = e-166, Method: Compositional matrix adjust.
Identities = 285/354 (80%), Positives = 315/354 (88%), Gaps = 8/354 (2%)
Query: 10 AIAQQTWELENNIIPMDTPSD---DSIFYYDEAGQNEFQREKPWANDPHYFKRVKISALA 66
AIA++TWELENNI+P++ P+D DSIF+YD+A Q + Q+EKPWA+DP+YFKRV ISALA
Sbjct: 7 AIARKTWELENNILPVE-PTDSASDSIFHYDDASQAKIQQEKPWASDPNYFKRVHISALA 65
Query: 67 LLKMVVHARSGGTIEVMGLMQGKTDADSIIVMDAFALPVEGTETRVNAQADAYEYMVDYS 126
LLKMVVHARSGGTIE+MGLMQGKT+ D+IIVMDAFALPVEGTETRVNAQ+DAYEYMV+YS
Sbjct: 66 LLKMVVHARSGGTIEIMGLMQGKTEGDTIIVMDAFALPVEGTETRVNAQSDAYEYMVEYS 125
Query: 127 QTNKQAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKV 186
QT+K AGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQ+QEPFLAVVIDPTRTVSAGKV
Sbjct: 126 QTSKLAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQYQEPFLAVVIDPTRTVSAGKV 185
Query: 187 EIGAFRTYPEGYKPPDEPISEYQTIPLNKIEDFGVHCKQYYSLDITYFKXXXXXXXXXXX 246
EIGAFRTYPEG+K D+ +SEYQTIPLNKIEDFGVHCKQYYSLDITYFK
Sbjct: 186 EIGAFRTYPEGHKISDDHVSEYQTIPLNKIEDFGVHCKQYYSLDITYFKSSLDSHLLDLL 245
Query: 247 WNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAENQLAHSRFGSLIAPT--PRKKEEE 304
WNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAE+QLA+SR+G IAP R+KE+E
Sbjct: 246 WNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAESQLANSRYGG-IAPAGHQRRKEDE 304
Query: 305 SPLAKITRDSAKITVEQVHGLMSQVIKDILFNSVHQANKSRTETTSDPEPMIES 358
LAKITRDSAKITVEQVHGLMSQVIKDILFNS Q+ KS + +SDPEPMI S
Sbjct: 305 PQLAKITRDSAKITVEQVHGLMSQVIKDILFNSARQSKKS-ADDSSDPEPMITS 357
>AT1G22920.2 | Symbols: CSN5A, JAB1, AJH1 | COP9 signalosome 5A |
chr1:8109998-8111895 REVERSE LENGTH=351
Length = 351
Score = 547 bits (1409), Expect = e-156, Method: Compositional matrix adjust.
Identities = 267/327 (81%), Positives = 294/327 (89%), Gaps = 7/327 (2%)
Query: 10 AIAQQTWELENNIIPMDTPSD---DSIFYYDEAGQNEFQREKPWANDPHYFKRVKISALA 66
AIA++TWELENNI+P++ P+D DSIF+YD+A Q + Q+EKPWA+DP+YFKRV ISALA
Sbjct: 7 AIARKTWELENNILPVE-PTDSASDSIFHYDDASQAKIQQEKPWASDPNYFKRVHISALA 65
Query: 67 LLKMVVHARSGGTIEVMGLMQGKTDADSIIVMDAFALPVEGTETRVNAQADAYEYMVDYS 126
LLKMVVHARSGGTIE+MGLMQGKT+ D+IIVMDAFALPVEGTETRVNAQ+DAYEYMV+YS
Sbjct: 66 LLKMVVHARSGGTIEIMGLMQGKTEGDTIIVMDAFALPVEGTETRVNAQSDAYEYMVEYS 125
Query: 127 QTNKQAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKV 186
QT+K AGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQ+QEPFLAVVIDPTRTVSAGKV
Sbjct: 126 QTSKLAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQYQEPFLAVVIDPTRTVSAGKV 185
Query: 187 EIGAFRTYPEGYKPPDEPISEYQTIPLNKIEDFGVHCKQYYSLDITYFKXXXXXXXXXXX 246
EIGAFRTYPEG+K D+ +SEYQTIPLNKIEDFGVHCKQYYSLDITYFK
Sbjct: 186 EIGAFRTYPEGHKISDDHVSEYQTIPLNKIEDFGVHCKQYYSLDITYFKSSLDSHLLDLL 245
Query: 247 WNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAENQLAHSRFGSLIAPT--PRKKEEE 304
WNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAE+QLA+SR+G IAP R+KE+E
Sbjct: 246 WNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAESQLANSRYGG-IAPAGHQRRKEDE 304
Query: 305 SPLAKITRDSAKITVEQVHGLMSQVIK 331
LAKITRDSAKITVEQVHGLMSQV K
Sbjct: 305 PQLAKITRDSAKITVEQVHGLMSQVSK 331
>AT5G23540.1 | Symbols: | Mov34/MPN/PAD-1 family protein |
chr5:7937772-7939339 FORWARD LENGTH=308
Length = 308
Score = 132 bits (332), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 85/207 (41%), Positives = 118/207 (57%), Gaps = 13/207 (6%)
Query: 58 KRVKISALALLKMVVHARSGGTIEVMGLMQGK-TDADSIIVMDAFALPVEGTETRVNAQA 116
++V IS+LALLKM+ H R+G +EVMGLM G+ D ++ V+D FA+P GT V A
Sbjct: 28 EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVD 87
Query: 117 DAYEY-MVDYSQTNKQAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVI 175
++ M+D KQ GR E VVGWYHSHPG+GCWLSG+D++TQ + + +AVV+
Sbjct: 88 HVFQTNMLDML---KQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVV 144
Query: 176 DPTRTVSAGKVEIGAFRTY-PEGYKPPDEPISEYQTIP-LNK--IEDFGVHC--KQYYSL 229
DP ++V GKV I AFR+ P+ EP + LNK I+ +H + YYS+
Sbjct: 145 DPIQSVK-GKVVIDAFRSINPQTIMLGQEPRQTTSNLGHLNKPSIQAL-IHGLNRHYYSI 202
Query: 230 DITYFKXXXXXXXXXXXWNKYWVNTLS 256
I Y K K W + L+
Sbjct: 203 AINYRKNELEEKMLLNLHKKKWTDGLT 229
>AT5G23540.2 | Symbols: | Mov34/MPN/PAD-1 family protein |
chr5:7938109-7939339 FORWARD LENGTH=259
Length = 259
Score = 110 bits (276), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 73/185 (39%), Positives = 101/185 (54%), Gaps = 13/185 (7%)
Query: 80 IEVMGLMQGK-TDADSIIVMDAFALPVEGTETRVNAQADAYEY-MVDYSQTNKQAGRLEN 137
+EVMGLM G+ D ++ V+D FA+P GT V A ++ M+D KQ GR E
Sbjct: 1 MEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDML---KQTGRPEM 57
Query: 138 VVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTY-PE 196
VVGWYHSHPG+GCWLSG+D++TQ + + +AVV+DP ++V GKV I AFR+ P+
Sbjct: 58 VVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVK-GKVVIDAFRSINPQ 116
Query: 197 GYKPPDEPISEYQTIP-LNK--IEDFGVHC--KQYYSLDITYFKXXXXXXXXXXXWNKYW 251
EP + LNK I+ +H + YYS+ I Y K K W
Sbjct: 117 TIMLGQEPRQTTSNLGHLNKPSIQAL-IHGLNRHYYSIAINYRKNELEEKMLLNLHKKKW 175
Query: 252 VNTLS 256
+ L+
Sbjct: 176 TDGLT 180
>AT1G80210.2 | Symbols: BRCC36A, AtBRCC36A | Mov34/MPN/PAD-1 family
protein | chr1:30163546-30165628 REVERSE LENGTH=371
Length = 371
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 64/148 (43%), Gaps = 18/148 (12%)
Query: 60 VKISALALLKMVVHARSGGTIEVMGLMQG----KTDADSIIVMDAFALPVEGTETRVNAQ 115
V +S L + HA S T E+MGL+ G D S M A P ++R + Q
Sbjct: 6 VNMSEDVWLTCLTHALSTETEEIMGLLLGDIEYSKDGGSATAMIWGASP----QSRSDRQ 61
Query: 116 ADAYE-----YMVDYSQTNK---QAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQFQ 167
D E +Q ++ GR V+GWYHSHP S +DV TQ + Q
Sbjct: 62 KDRVETNPEQLAAASAQADRMTISTGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLD 121
Query: 168 EPFLAVVID--PTRTVSAGKVEIGAFRT 193
F+ ++ G++++ AF++
Sbjct: 122 SGFIGLIFSCFSEDANKVGRIQVIAFQS 149
>AT1G80210.1 | Symbols: BRCC36A, AtBRCC36A | Mov34/MPN/PAD-1 family
protein | chr1:30163357-30165628 REVERSE LENGTH=406
Length = 406
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 64/148 (43%), Gaps = 18/148 (12%)
Query: 60 VKISALALLKMVVHARSGGTIEVMGLMQG----KTDADSIIVMDAFALPVEGTETRVNAQ 115
V +S L + HA S T E+MGL+ G D S M A P ++R + Q
Sbjct: 6 VNMSEDVWLTCLTHALSTETEEIMGLLLGDIEYSKDGGSATAMIWGASP----QSRSDRQ 61
Query: 116 ADAYE-----YMVDYSQTNK---QAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQFQ 167
D E +Q ++ GR V+GWYHSHP S +DV TQ + Q
Sbjct: 62 KDRVETNPEQLAAASAQADRMTISTGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLD 121
Query: 168 EPFLAVVID--PTRTVSAGKVEIGAFRT 193
F+ ++ G++++ AF++
Sbjct: 122 SGFIGLIFSCFSEDANKVGRIQVIAFQS 149