Miyakogusa Predicted Gene

Lj1g3v1966200.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1966200.1 Non Chatacterized Hit- tr|E3QIH3|E3QIH3_COLGM
Putative uncharacterized protein OS=Colletotrichum
gra,28.51,9e-19,seg,NULL; Nucleic acid-binding proteins,Nucleic
acid-binding, OB-fold-like; "Winged helix" DNA-bindi,CUFF.28204.1
         (274 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G24490.2 | Symbols: RPA2, ATRPA2, ROR1, ATRPA32A, RPA32A | re...   251   5e-67
AT2G24490.1 | Symbols: RPA2, ATRPA2, ROR1, ATRPA32A, RPA32A | re...   251   5e-67
AT3G02920.1 | Symbols: RPA32B, ATRPA32B | Replication protein A,...   211   4e-55
AT3G02920.2 | Symbols: RPA32B | Replication protein A, subunit R...   199   1e-51

>AT2G24490.2 | Symbols: RPA2, ATRPA2, ROR1, ATRPA32A, RPA32A |
           replicon protein A2 | chr2:10398651-10400416 REVERSE
           LENGTH=279
          Length = 279

 Score =  251 bits (640), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 126/273 (46%), Positives = 179/273 (65%), Gaps = 4/273 (1%)

Query: 4   SSTNFDANSAFSGGGFMXXXXXXXXXXXPAPLKSRDTQGLVPVTVRQISEASHSGDDKSN 63
           SS+ F+ NS FSGGGFM            +  K+RD QGLVPVTV+QI+E   S  +KS 
Sbjct: 3   SSSQFEPNSGFSGGGFMSSQPSQAYESSSSTAKNRDFQGLVPVTVKQITECFQSSGEKSG 62

Query: 64  FVINGVGLTNVTLVGMVFEKVE-KNTEVNFVLDDGTGRIKCRRWVNETYDTKEMDQIQDG 122
            VING+ LTNV+LVG+V +K E K TEV F LDDGTGRI C+RWV+ET+D +EM+ ++DG
Sbjct: 63  LVINGISLTNVSLVGLVCDKDESKVTEVRFTLDDGTGRIDCKRWVSETFDAREMESVRDG 122

Query: 123 MYVRLYGHLKSFQGVRQLVAFSVRPVTNFDEIPFHFIDCIHNHLYSKVKVEGITGNPPSS 182
            YVRL GHLK+FQG  QL+ FSVRP+ +F+E+ FH+I+CIH +  +        G+   S
Sbjct: 123 TYVRLSGHLKTFQGKTQLLVFSVRPIMDFNEVTFHYIECIHFYSQNSESQRQQVGDVTQS 182

Query: 183 DLSLIAARNAPNQAASSNPLYA---HGVDQLKGCDKLVFDYLQQHSDTSDESGIHVDELS 239
             +     +  NQA   NP+ +   +  +  K  D ++ DYL+Q + T+ + GIH+DE++
Sbjct: 183 VNTTFQGGSNTNQATLLNPVVSSQNNDGNGRKNLDDMILDYLKQPACTARQQGIHIDEIA 242

Query: 240 LQLRLPLDKIRSSLEVLKQEGYVYSTIDEDHHK 272
            QL++P +K+   ++ L+ +G +YSTIDE H K
Sbjct: 243 QQLKIPKNKLEGVVQSLEGDGLIYSTIDEYHFK 275


>AT2G24490.1 | Symbols: RPA2, ATRPA2, ROR1, ATRPA32A, RPA32A |
           replicon protein A2 | chr2:10398651-10400416 REVERSE
           LENGTH=279
          Length = 279

 Score =  251 bits (640), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 126/273 (46%), Positives = 179/273 (65%), Gaps = 4/273 (1%)

Query: 4   SSTNFDANSAFSGGGFMXXXXXXXXXXXPAPLKSRDTQGLVPVTVRQISEASHSGDDKSN 63
           SS+ F+ NS FSGGGFM            +  K+RD QGLVPVTV+QI+E   S  +KS 
Sbjct: 3   SSSQFEPNSGFSGGGFMSSQPSQAYESSSSTAKNRDFQGLVPVTVKQITECFQSSGEKSG 62

Query: 64  FVINGVGLTNVTLVGMVFEKVE-KNTEVNFVLDDGTGRIKCRRWVNETYDTKEMDQIQDG 122
            VING+ LTNV+LVG+V +K E K TEV F LDDGTGRI C+RWV+ET+D +EM+ ++DG
Sbjct: 63  LVINGISLTNVSLVGLVCDKDESKVTEVRFTLDDGTGRIDCKRWVSETFDAREMESVRDG 122

Query: 123 MYVRLYGHLKSFQGVRQLVAFSVRPVTNFDEIPFHFIDCIHNHLYSKVKVEGITGNPPSS 182
            YVRL GHLK+FQG  QL+ FSVRP+ +F+E+ FH+I+CIH +  +        G+   S
Sbjct: 123 TYVRLSGHLKTFQGKTQLLVFSVRPIMDFNEVTFHYIECIHFYSQNSESQRQQVGDVTQS 182

Query: 183 DLSLIAARNAPNQAASSNPLYA---HGVDQLKGCDKLVFDYLQQHSDTSDESGIHVDELS 239
             +     +  NQA   NP+ +   +  +  K  D ++ DYL+Q + T+ + GIH+DE++
Sbjct: 183 VNTTFQGGSNTNQATLLNPVVSSQNNDGNGRKNLDDMILDYLKQPACTARQQGIHIDEIA 242

Query: 240 LQLRLPLDKIRSSLEVLKQEGYVYSTIDEDHHK 272
            QL++P +K+   ++ L+ +G +YSTIDE H K
Sbjct: 243 QQLKIPKNKLEGVVQSLEGDGLIYSTIDEYHFK 275


>AT3G02920.1 | Symbols: RPA32B, ATRPA32B | Replication protein A,
           subunit RPA32 | chr3:651844-654189 REVERSE LENGTH=278
          Length = 278

 Score =  211 bits (537), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 109/273 (39%), Positives = 166/273 (60%), Gaps = 7/273 (2%)

Query: 7   NFDANSAFSGGGFMXXXXXXXXXXXPAPLKSRDTQGLVPVTVRQISEASHSGDDKSNFVI 66
           +FD N+AF+GGGFM            + LK+RD + L+P+T++Q+S AS +G+  SNF I
Sbjct: 5   DFDGNAAFAGGGFMPSQATTQAHESSSSLKNRDVRTLLPLTLKQLSSASTTGE--SNFSI 62

Query: 67  NGVGLTNVTLVGMVFEKVEKNTEVNFVLDDGTGRIKCRRWVNETYDTKEMDQIQDGMYVR 126
           +GV +  V +VG +     + T+V+FV+DDGTG + C RW +   +T+EM+ ++ GMYVR
Sbjct: 63  DGVDIKTVVIVGRISRMENRITQVDFVVDDGTGWVDCVRWCHARQETEEMEAVKLGMYVR 122

Query: 127 LYGHLKSFQGVRQLVAFSVRPVTNFDEIPFHFIDCIHNHLY-SKVKVEGITGNP----PS 181
           L+GHLK FQG R +  FSVRPVT+F+EI  HF +C++ H+Y +K++   IT +     P 
Sbjct: 123 LHGHLKIFQGKRSVNVFSVRPVTDFNEIVHHFTECMYVHMYNTKLRGGSITQDTATPRPQ 182

Query: 182 SDLSLIAARNAPNQAASSNPLYAHGVDQLKGCDKLVFDYLQQHSDTSDESGIHVDELSLQ 241
              S +     P Q   SN       D + G  + V +YL Q      E+G+H D ++ +
Sbjct: 183 MPYSTMPTPAKPYQTGPSNQFPNQFNDSMHGVKQTVLNYLNQPMHIVSEAGVHCDIIARE 242

Query: 242 LRLPLDKIRSSLEVLKQEGYVYSTIDEDHHKKT 274
           LR+PL +++ +LE L  +G +YST+DE   K T
Sbjct: 243 LRIPLLQVKEALEQLSNDGCIYSTLDETCFKST 275


>AT3G02920.2 | Symbols: RPA32B | Replication protein A, subunit
           RPA32 | chr3:651844-654189 REVERSE LENGTH=298
          Length = 298

 Score =  199 bits (507), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 109/293 (37%), Positives = 166/293 (56%), Gaps = 27/293 (9%)

Query: 7   NFDANSAFSGGGFMXXXXXXXXXXXPAPLK--------------------SRDTQGLVPV 46
           +FD N+AF+GGGFM            + LK                    +RD + L+P+
Sbjct: 5   DFDGNAAFAGGGFMPSQATTQAHESSSSLKVYVSDSRRFSGISAAKSSIRNRDVRTLLPL 64

Query: 47  TVRQISEASHSGDDKSNFVINGVGLTNVTLVGMVFEKVEKNTEVNFVLDDGTGRIKCRRW 106
           T++Q+S AS +G+  SNF I+GV +  V +VG +     + T+V+FV+DDGTG + C RW
Sbjct: 65  TLKQLSSASTTGE--SNFSIDGVDIKTVVIVGRISRMENRITQVDFVVDDGTGWVDCVRW 122

Query: 107 VNETYDTKEMDQIQDGMYVRLYGHLKSFQGVRQLVAFSVRPVTNFDEIPFHFIDCIHNHL 166
            +   +T+EM+ ++ GMYVRL+GHLK FQG R +  FSVRPVT+F+EI  HF +C++ H+
Sbjct: 123 CHARQETEEMEAVKLGMYVRLHGHLKIFQGKRSVNVFSVRPVTDFNEIVHHFTECMYVHM 182

Query: 167 Y-SKVKVEGITGNP----PSSDLSLIAARNAPNQAASSNPLYAHGVDQLKGCDKLVFDYL 221
           Y +K++   IT +     P    S +     P Q   SN       D + G  + V +YL
Sbjct: 183 YNTKLRGGSITQDTATPRPQMPYSTMPTPAKPYQTGPSNQFPNQFNDSMHGVKQTVLNYL 242

Query: 222 QQHSDTSDESGIHVDELSLQLRLPLDKIRSSLEVLKQEGYVYSTIDEDHHKKT 274
            Q      E+G+H D ++ +LR+PL +++ +LE L  +G +YST+DE   K T
Sbjct: 243 NQPMHIVSEAGVHCDIIARELRIPLLQVKEALEQLSNDGCIYSTLDETCFKST 295