Miyakogusa Predicted Gene

Lj1g3v1965120.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1965120.1 tr|G7JCC2|G7JCC2_MEDTR Cryptochrome DASH
OS=Medicago truncatula GN=MTR_3g108710 PE=4
SV=1,67.95,0,CRYPTOCHROME,NULL; DNA_photolyase,DNA photolyase,
N-terminal; no description,Rossmann-like alpha/bet,CUFF.28199.1
         (266 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G24850.1 | Symbols: CRY3 | cryptochrome 3 | chr5:8535399-8538...   255   2e-68
AT2G47590.1 | Symbols: PHR2 | photolyase/blue-light receptor 2 |...   145   2e-35
AT3G15620.1 | Symbols: UVR3 | DNA photolyase family protein | ch...    62   4e-10
AT3G15620.2 | Symbols: UVR3 | DNA photolyase family protein | ch...    62   5e-10
AT4G25290.1 | Symbols:  | DNA photolyases;DNA photolyases | chr4...    60   1e-09

>AT5G24850.1 | Symbols: CRY3 | cryptochrome 3 | chr5:8535399-8538016
           REVERSE LENGTH=526
          Length = 526

 Score =  255 bits (652), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 125/210 (59%), Positives = 157/210 (74%), Gaps = 18/210 (8%)

Query: 52  LHQVPE--QDANNNIIDQTFRKY---TSNNAKRRGKGTAIVWLRNDLRVLDNETLYKAWV 106
           +H+VP   ++  +++  +TF +Y   +S++ KR+GKG  I+W RNDLRVLDN+ LYKAW 
Sbjct: 5   IHRVPALTEEEIDSVAIKTFERYALPSSSSVKRKGKGVTILWFRNDLRVLDNDALYKAWS 64

Query: 107 SSETLLPVYCVDPRLFATTYHFGFQKTGALRAQFLIECLADLRDNLMKRGVNLLIRHGKP 166
           SS+T+LPVYC+DPRLF TT+ F F KTGALR  FL+ECL DLR NLMKRG+NLLIR GKP
Sbjct: 65  SSDTILPVYCLDPRLFHTTHFFNFPKTGALRGGFLMECLVDLRKNLMKRGLNLLIRSGKP 124

Query: 167 EDVLPSLAKAFGAHTVYAQKETCSEELNVESSVIKGLQQVVIPPEQSAGLINSSNHPKLQ 226
           E++LPSLAK FGA TV+A KETCSEE++VE  V +GL++V              N  KL+
Sbjct: 125 EEILPSLAKDFGARTVFAHKETCSEEVDVERLVNQGLKRV-------------GNSTKLE 171

Query: 227 FIWGTTMYHLDDLPFDAACLPDVYTQFRKA 256
            IWG+TMYH DDLPFD   LPDVYTQFRK+
Sbjct: 172 LIWGSTMYHKDDLPFDVFDLPDVYTQFRKS 201


>AT2G47590.1 | Symbols: PHR2 | photolyase/blue-light receptor 2 |
           chr2:19521888-19523732 FORWARD LENGTH=447
          Length = 447

 Score =  145 bits (367), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 73/167 (43%), Positives = 97/167 (58%), Gaps = 16/167 (9%)

Query: 88  WLRNDLRVLDNETLYKAWVSSETLLPVYCVDPRLFATTYHFGFQKTGALRAQFLIECLAD 147
           W RNDLRV DNE L  A     ++LPVYC DPR +  +   GF KTG  RAQFLIE +++
Sbjct: 120 WFRNDLRVHDNECLNSANDECVSVLPVYCFDPRDYGKSSS-GFDKTGPFRAQFLIESVSE 178

Query: 148 LRDNLMKRGVNLLIRHGKPEDVLPSLAKAFGAHTVYAQKETCSEELNVESSVIKGLQQVV 207
           LR NL  RG NL++R GKPE VL  LAK  GA  VYA +E   +E+  E  +   +++  
Sbjct: 179 LRKNLQARGSNLVVRVGKPEAVLVELAKEIGADAVYAHREVSHDEVKAEGKIETAMKEEG 238

Query: 208 IPPEQSAGLINSSNHPKLQFIWGTTMYHLDDLPFDAACLPDVYTQFR 254
           +               ++++ WG+T+YHLDDLPF    LP  Y  F+
Sbjct: 239 V---------------EVKYFWGSTLYHLDDLPFKIEDLPSNYGAFK 270


>AT3G15620.1 | Symbols: UVR3 | DNA photolyase family protein |
           chr3:5293475-5296548 REVERSE LENGTH=556
          Length = 556

 Score = 62.0 bits (149), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 4/93 (4%)

Query: 81  GKGTAIVWLRNDLRVLDNETLYKAWVSSETLLPVYCVDPRLFAT---TYHFGFQKTGALR 137
           G G+ ++W R  LRV DN  L  A   SE + PV+ +DP    +    +  G  + G  R
Sbjct: 23  GSGS-LIWFRKGLRVHDNPALEYASKGSEFMYPVFVIDPHYMESDPSAFSPGSSRAGVNR 81

Query: 138 AQFLIECLADLRDNLMKRGVNLLIRHGKPEDVL 170
            +FL+E L DL  +L K G  LL+  G+P +VL
Sbjct: 82  IRFLLESLKDLDSSLKKLGSRLLVFKGEPGEVL 114


>AT3G15620.2 | Symbols: UVR3 | DNA photolyase family protein |
           chr3:5294201-5296548 REVERSE LENGTH=445
          Length = 445

 Score = 61.6 bits (148), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 4/93 (4%)

Query: 81  GKGTAIVWLRNDLRVLDNETLYKAWVSSETLLPVYCVDPRLFAT---TYHFGFQKTGALR 137
           G G+ ++W R  LRV DN  L  A   SE + PV+ +DP    +    +  G  + G  R
Sbjct: 23  GSGS-LIWFRKGLRVHDNPALEYASKGSEFMYPVFVIDPHYMESDPSAFSPGSSRAGVNR 81

Query: 138 AQFLIECLADLRDNLMKRGVNLLIRHGKPEDVL 170
            +FL+E L DL  +L K G  LL+  G+P +VL
Sbjct: 82  IRFLLESLKDLDSSLKKLGSRLLVFKGEPGEVL 114


>AT4G25290.1 | Symbols:  | DNA photolyases;DNA photolyases |
           chr4:12941486-12944994 REVERSE LENGTH=692
          Length = 692

 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 79/172 (45%), Gaps = 24/172 (13%)

Query: 84  TAIVWLRNDLRVLDNETLYKAWVSSETLLPVYCVDPRLFATTYHFGFQKTGALRAQFLIE 143
           TA+VW ++DLRV D+  L  A      ++P+Y +D R+ +         T  L  +  I 
Sbjct: 36  TAVVWFKHDLRVDDHPGLLAA-SKHRAVIPLYVLDRRILSR------YTTDTL--ELAII 86

Query: 144 CLADLRDNLMKRGVNLLIRHGKPEDVLPSLAKAFGAHTVYAQKETCSEELNVESSVIKGL 203
            L DLR  L K+G NL++R+G  E+V+  L K   A  V+ ++E       V  +V   L
Sbjct: 87  ALEDLRKTLKKQGSNLMLRYGNAENVIEDLVKEVRAPFVFVEEEVEYHLCEVLDAVKNKL 146

Query: 204 QQVVIPPEQSAGLINSSNHPKLQFIWGTTMYHLDDLPFDAACLPDVYTQFRK 255
           + V +          S   P++   W T  Y   +L      LP  + +F+K
Sbjct: 147 EGVSL----------SGESPRI-VAWRTPFYESQNL----TDLPQSWEEFKK 183