Miyakogusa Predicted Gene

Lj1g3v1943910.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1943910.1 Non Chatacterized Hit- tr|I1JUK8|I1JUK8_SOYBN
Uncharacterized protein (Fragment) OS=Glycine max
GN=G,78.38,0,seg,NULL; SUBFAMILY NOT NAMED,NULL; VPRBP
PROTEIN-RELATED,NULL,CUFF.28227.1
         (638 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G31160.1 | Symbols: DCAF1 | DDB1-CUL4 associated factor 1 | c...   501   e-142

>AT4G31160.1 | Symbols: DCAF1 | DDB1-CUL4 associated factor 1 |
           chr4:15145936-15152939 FORWARD LENGTH=1883
          Length = 1883

 Score =  501 bits (1289), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 308/647 (47%), Positives = 410/647 (63%), Gaps = 85/647 (13%)

Query: 1   MRYLRLRVLGETSGSQRDTSHLSESRHSSGNTSVRGKDDGRSRIRQLLDSSHLDDTRVND 60
           M YLR+RVL E S S+    H +E++H     S++ K++GRSR+R+++D+          
Sbjct: 222 MHYLRVRVLKEPSTSR---IHTTETKH----VSLKTKEEGRSRVRKIVDTVE-------- 266

Query: 61  ERSLDDPTLERGQDRNTSGQTCQEDAWIDDEPTDRLGEGADICEVDSDGEDRWHCRDIRD 120
                D  LE    R       Q D                  E + DG D ++   + D
Sbjct: 267 ----GDHVLETDSGREMGQTDVQPDG-----------------EFEIDGRDVFNVSGVVD 305

Query: 121 GKTKHGEHEXXXXXXXXXXXXXXXXXXXXXKGRVNEGTVESEPVLSPPGPGSRLGQGCSV 180
            K K G+                       +GRV+EG  ++E +L+ P    RLG     
Sbjct: 306 CKIKPGDDNSVRDDPSRHRLNRSKSRG---RGRVHEGAPDTEVLLASP----RLG----- 353

Query: 181 RDRSIVRNADVRRVPDSKN-------FARITSEVSVSERMDNDDCFQGCHIGSKDISDLV 233
             R +VR+ D+ ++ D +N         ++ S +   ER DND+CFQGC IG+K+I+DLV
Sbjct: 354 --RLLVRDRDLSKISDGRNAEDVTVCLGKMKSGIMEIEREDNDECFQGCIIGTKNITDLV 411

Query: 234 RKAVQAAETEARSANAPEEAVKVAGDAAADLVKTAATEEYNSTKDEELAVLAASRAASTV 293
           ++AV AAETEAR+A+AP++A K AGDAAA+LVKTAA EE+ S+  EE AV AA+RAA TV
Sbjct: 412 KRAVGAAETEARAAHAPDDAAKAAGDAAAELVKTAALEEFKSSGSEEAAVSAATRAAITV 471

Query: 294 IDAASAVEVSRNSVCVNNEAENVSGRETESSEDVEDYFIPDIQSLANLREKYCIQCLELL 353
           IDAA   EVSRN  CV           ++ + DV +  +PDI+SLA L+EKYCIQCLE+L
Sbjct: 472 IDAA---EVSRNPTCVT----------SDQTTDVSEVSLPDIESLAQLQEKYCIQCLEIL 518

Query: 354 GQYLEVLGPVLHEKGVDVCLALLQQNSKHQEASKVALLLPDVMKLICALSAHKKFAALFV 413
           G+Y+EVLGPVLHEKGVDVC+ LL++ S+  + S V+ LLPDVMKLICAL+AH+KFAA+FV
Sbjct: 519 GEYVEVLGPVLHEKGVDVCIVLLERTSQLDDRSTVSPLLPDVMKLICALAAHRKFAAMFV 578

Query: 414 DRGGMQKLLAVPRLAQTFFGLSSCLVTIGSLQGLMERVCALPSDVVYHVVELALQLLECN 473
           +R G+ KLLAVPR+++TF+GLSSCL TIGSLQG+MERVCALP  V++ VV+LA++LL+C+
Sbjct: 579 ERRGILKLLAVPRVSETFYGLSSCLYTIGSLQGIMERVCALPLVVIHQVVKLAIELLDCS 638

Query: 474 QDQARENXXXXXXXXXXXXXXXXXXDSQDGLQKLLGLLNDVASVRSGVTXXXXXXXXXXX 533
           QDQAR+N                  D+QD LQKLL +L D ASVR+G             
Sbjct: 639 QDQARKNSALFFAAAFVFRAILDAFDAQDSLQKLLAILKDAASVRTGAN----------- 687

Query: 534 XRNDRSSAEALTSSEKVVAYEACVALRKYFRAHLLLLVDSIRPNKSNRSAARNV--PSIR 591
              DRS+ E +TSSEK +A+  C ALR+YFRAHLLLLVDSIRP++ +R    +   P+IR
Sbjct: 688 --TDRSAPEVMTSSEKQMAFHTCFALRQYFRAHLLLLVDSIRPSRISRGGVPSSMKPNIR 745

Query: 592 AAYKPLLISNEAIDAVFQQLQKDRKLGPAFVRTYWPAVEKFVSYNGH 638
           AAYKPL ISNEA+DA+F QLQKDR+LGP FV+  WPAV  F++ +GH
Sbjct: 746 AAYKPLDISNEAVDAIFLQLQKDRRLGPTFVKAQWPAVNNFLASSGH 792