Miyakogusa Predicted Gene

Lj1g3v1943900.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1943900.2 CUFF.28224.2
         (744 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G31160.1 | Symbols: DCAF1 | DDB1-CUL4 associated factor 1 | c...   587   e-168

>AT4G31160.1 | Symbols: DCAF1 | DDB1-CUL4 associated factor 1 |
            chr4:15145936-15152939 FORWARD LENGTH=1883
          Length = 1883

 Score =  587 bits (1514), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 363/807 (44%), Positives = 448/807 (55%), Gaps = 131/807 (16%)

Query: 3    KLLAVPRLSQTFYGLSSCLVTIGSVQGLMEQVCALPSNLVYHVVELALQLLECNLXXXXX 62
            KLLAVPR+S+TFYGLSSCL TIGS+QG+ME+VCALP  +++ VV+LA++LL+C+      
Sbjct: 585  KLLAVPRVSETFYGLSSCLYTIGSLQGIMERVCALPLVVIHQVVKLAIELLDCSQDQARK 644

Query: 63   XXXXXXXXXXXXXXXXXXXXSQDGLQKLLGLLNDVASVRSGVTXXXXXXXXXXXXRNDRS 122
                                +QD LQKLL +L D ASVR+G                DRS
Sbjct: 645  NSALFFAAAFVFRAILDAFDAQDSLQKLLAILKDAASVRTGAN-------------TDRS 691

Query: 123  SAEALTSSEKLVAYETCVALQKYFRAHLLLLVDSISPDKSNRSAVINIR--SITAAYKPL 180
            + E +TSSEK +A+ TC AL++YFRAHLLLLVDSI P + +R  V +    +I AAYKPL
Sbjct: 692  APEVMTSSEKQMAFHTCFALRQYFRAHLLLLVDSIRPSRISRGGVPSSMKPNIRAAYKPL 751

Query: 181  LISNEAINAVFQQLQKDRKLGPAFVRKNWPAVEKFLDCNGHTTMLELCQAPPQERYLHDL 240
             ISNEA++A+F QLQKDR+LGP FV+  WPAV  FL  +GH TMLELCQ PP +RYLHDL
Sbjct: 752  DISNEAVDAIFLQLQKDRRLGPTFVKAQWPAVNNFLASSGHVTMLELCQTPPVDRYLHDL 811

Query: 241  VEYALGILHIVTLVTRSRKMIVNTTLSNNRAGIAVILEAANIACDHVDPEIIQPALNVLV 300
            ++YA G+LHIVT +   RK I + TLSNNRAGIAVIL+AANI+   VDPEIIQPALNVL+
Sbjct: 812  LQYAFGVLHIVTSIPDGRKAIAHATLSNNRAGIAVILDAANISNSIVDPEIIQPALNVLI 871

Query: 301  NLVCPPPSITNKPSPVMQGQQFVSSQTSNGPPSETRDRNAEPNTIMIDRAVHVSSHIDPR 360
            NLVCPPPS++NKP P+ Q  Q V  Q +  P                             
Sbjct: 872  NLVCPPPSLSNKP-PLAQNHQPVPGQATTRP----------------------------- 901

Query: 361  ERNGESSAVDRSSVVALSAQSVNNTPQTPGPAASSGLVGDRRIXXXXXXXXXXXXXRLEH 420
                       S+ VA+  QS  N PQTP   ASSGLVGDRRI             +LE 
Sbjct: 902  -----------STDVAVGTQSTGNAPQTPVAPASSGLVGDRRIFLGAGTGSAGLAAKLEQ 950

Query: 421  GYRQAREAVRSNNGIKVLLHFLQPRIYLSP-ASVDCLRVLACRVLLGLARDDTIAHILTK 479
             YRQAREAVR N+GIK+LL  LQPRIY++P A+ DCLR LACRVLLGLARDDTIA ILTK
Sbjct: 951  VYRQAREAVRGNDGIKILLKLLQPRIYVNPPATPDCLRALACRVLLGLARDDTIAQILTK 1010

Query: 480  LQVGKKLSELIRDSGSPTLGNEQGRWQAELSQAAIELIGIVTNLGCXXXXXXXXXXXXXX 539
            L+VGK LSELIRDSG  + G +QGRWQAEL+Q A+ELIGIVTN G               
Sbjct: 1011 LEVGKSLSELIRDSGGQSSGTDQGRWQAELAQVALELIGIVTNSGHATTLTASDAATPTL 1070

Query: 540  XXXXXXXXXXXXXXXYHSRELLLLVHEHLQAFGLAQTASTLLKEAQXXXXXXXXXXXXAQ 599
                           Y S+ELLLL+HEHLQA GL  TAS LLKEAQ              
Sbjct: 1071 RRIERAAIAAATPITYDSKELLLLIHEHLQASGLGDTASALLKEAQLTPLPSSASPSSIA 1130

Query: 600  QPTAQEASS--------------------------------------------------- 608
              T QE S+                                                   
Sbjct: 1131 YSTTQEMSTPLAQEQWPSGRANSGFFTSKPKVCAHDEDPNSRSNAALSAKKKHLASSTLE 1190

Query: 609  --TPI---QWPSGRTPSGFLTRVPGFLTHKLKFNSIDEYSSLKSDAIXXXXXXXXXXXXX 663
              TP+   QWPSGR   GF   +P       K N+ DE  S + +A              
Sbjct: 1191 MPTPVAQQQWPSGRANCGFCPSIP-------KINARDEDPSSRGNAAPSAKKKQLTFSPS 1243

Query: 664  XXXXXHQPVDSQ----HTSVRKLLSTGREPSDTSIVETPSESAVKHNIDAGSQYKTPITL 719
                  +   S      ++ R    +  +P+     ET +E  +K+++DA +Q+KTPI+ 
Sbjct: 1244 FSSQSRKQSFSHDALPQSTQRINCCSNSDPALADTSETAAELVLKNDLDADAQFKTPISF 1303

Query: 720  PSKRKLSDLKDIPMFSSSV--KRLNVG 744
            P KRKLS+L+D     SSV  KR+++G
Sbjct: 1304 PRKRKLSELRD-----SSVPGKRIDLG 1325