Miyakogusa Predicted Gene

Lj1g3v1943860.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1943860.1 Non Chatacterized Hit- tr|J3LTT9|J3LTT9_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB03G4,45.45,5e-19,seg,NULL; FAMILY NOT NAMED,NULL;
coiled-coil,NULL,CUFF.28185.1
         (261 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G18950.1 | Symbols:  | DDT domain superfamily | chr1:6546539-...   112   2e-25
AT5G25580.1 | Symbols:  | BEST Arabidopsis thaliana protein matc...    89   4e-18

>AT1G18950.1 | Symbols:  | DDT domain superfamily |
           chr1:6546539-6551549 FORWARD LENGTH=750
          Length = 750

 Score =  112 bits (281), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 56/121 (46%), Positives = 81/121 (66%), Gaps = 3/121 (2%)

Query: 7   KAKVKGCLPLPTINFHWETLASNLEEFSEVAEKFSSSMSTLEFNVGKKLQSDAIPVLEKL 66
           K K KG   LP I + WET+A+N +EF +V+EK   S S +E ++GKKL  D +P +EK 
Sbjct: 311 KVKTKGSKILPNITYQWETVATNFDEFQDVSEKLLQSSSRIEVSLGKKLVKDMLPEIEKE 370

Query: 67  QKKKERALKQKQRQEMLLKDFQKPYVSGTT-RSCRTRKPISYTFEAYDQTIKEAIQLTNK 125
            K+KE+ LK++ RQ +LL +F    V G   RS R RKP+ YTF+ YD++I +AI++T K
Sbjct: 371 HKRKEKLLKKQHRQALLLDNFV--VVDGLAGRSLRDRKPVRYTFDDYDKSINDAIKITKK 428

Query: 126 R 126
           +
Sbjct: 429 K 429


>AT5G25580.1 | Symbols:  | BEST Arabidopsis thaliana protein match
           is: DDT domain superfamily (TAIR:AT1G18950.1); Has 178
           Blast hits to 178 proteins in 75 species: Archae - 0;
           Bacteria - 4; Metazoa - 51; Fungi - 33; Plants - 60;
           Viruses - 1; Other Eukaryotes - 29 (source: NCBI BLink).
           | chr5:8903550-8906108 FORWARD LENGTH=405
          Length = 405

 Score = 88.6 bits (218), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 46/102 (45%), Positives = 72/102 (70%), Gaps = 3/102 (2%)

Query: 23  WETLASNLEEFSEVAEKFSSSMSTLEFNVGKKLQSDAIPVLEKLQKKKERALKQKQRQEM 82
           WET A+NL+EF  VA + SSS ++     G+ ++++AIPV+EK  KK+ERA+K+K ++EM
Sbjct: 236 WETEATNLDEFQSVARELSSSKASSLAATGQMIETEAIPVVEKYHKKRERAIKKKMKEEM 295

Query: 83  LLK-DFQKPYVSGTTRSCRTRKPISYTFEAYDQTIKEAIQLT 123
           ++  +F +P    TTRSCR   P +YTF+ YD+ I +A++ T
Sbjct: 296 VVNVNFSRPL--RTTRSCRNHMPATYTFDEYDKMISDAVEET 335