Miyakogusa Predicted Gene

Lj1g3v1932810.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1932810.1 Non Chatacterized Hit- tr|I1MW23|I1MW23_SOYBN
Uncharacterized protein (Fragment) OS=Glycine max
PE=4,34.56,0.000000000006,FAR1,FAR1 DNA binding domain,CUFF.28193.1
         (198 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G10240.1 | Symbols: FRS11 | FAR1-related sequence 11 | chr1:3...    65   2e-11
AT5G28530.1 | Symbols: FRS10 | FAR1-related sequence 10 | chr5:1...    65   4e-11

>AT1G10240.1 | Symbols: FRS11 | FAR1-related sequence 11 |
           chr1:3356835-3359271 REVERSE LENGTH=680
          Length = 680

 Score = 65.5 bits (158), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/84 (40%), Positives = 50/84 (59%), Gaps = 6/84 (7%)

Query: 70  VSEVENQRKRKTSRCNCGSKMVVTKRTIGFDEKWVVKYFYNHHNHELLDDKEVKFLPAY- 128
           +SE + QR R++SRC C + + ++K T     +W V  F NHHNHELL+  +V+FLPAY 
Sbjct: 108 LSEGKPQRNRRSSRCGCQAYLRISKLTELGSTEWRVTGFANHHNHELLEPNQVRFLPAYR 167

Query: 129 -----PQSCILQFLMLVLDSEQMI 147
                 +S IL F    +  +QM+
Sbjct: 168 SISDADKSRILMFSKTGISVQQMM 191


>AT5G28530.1 | Symbols: FRS10 | FAR1-related sequence 10 |
           chr5:10525078-10527300 REVERSE LENGTH=685
          Length = 685

 Score = 64.7 bits (156), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 28/60 (46%), Positives = 38/60 (63%)

Query: 69  KVSEVENQRKRKTSRCNCGSKMVVTKRTIGFDEKWVVKYFYNHHNHELLDDKEVKFLPAY 128
           K + VE+ R+RK+ RC C  K+ +TK  +     W V  F N HNHELL+D +V+ LPAY
Sbjct: 112 KKANVEHPRERKSVRCGCDGKLYLTKEVVDGVSHWYVSQFSNVHNHELLEDDQVRLLPAY 171