Miyakogusa Predicted Gene

Lj1g3v1931420.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1931420.1 CUFF.28423.1
         (323 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G25670.2 | Symbols:  | BEST Arabidopsis thaliana protein matc...    89   4e-18
AT2G25670.1 | Symbols:  | BEST Arabidopsis thaliana protein matc...    89   4e-18
AT4G32610.1 | Symbols:  | copper ion binding | chr4:15728376-157...    87   1e-17

>AT2G25670.2 | Symbols:  | BEST Arabidopsis thaliana protein match
           is: copper ion binding (TAIR:AT4G32610.1); Has 43784
           Blast hits to 26928 proteins in 1799 species: Archae -
           86; Bacteria - 6347; Metazoa - 15971; Fungi - 5398;
           Plants - 1931; Viruses - 259; Other Eukaryotes - 13792
           (source: NCBI BLink). | chr2:10929062-10930619 REVERSE
           LENGTH=318
          Length = 318

 Score = 89.0 bits (219), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 68/203 (33%), Positives = 80/203 (39%), Gaps = 10/203 (4%)

Query: 1   MVGGGSRRDEGSLVLNNTNVFAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPQMFW 60
           M GGG+RRDEGS+ + +TN+FAA                               EPQ++W
Sbjct: 1   MAGGGNRRDEGSITIQSTNLFAALDTRKKKKKSDKAGKSKGSSKSREPEKEP--EPQVYW 58

Query: 61  APAPLNATSWAXXXXXXX---YYATTAPPQSVWGVSEPHHSKXXXXXXXXXXXXXXXXXX 117
           AP PL   SWA          YYATTAPPQS W  S P H+                   
Sbjct: 59  APTPLKVKSWADIDDEDDDDDYYATTAPPQSGWSTSLPSHTDSKDVHVEESESEEDILDE 118

Query: 118 XXXXXXXXXXXXXXXSVKPEPEVKKHAEVSAPPPLPPKETXXXXXXXXXXXXXXXXXXXX 177
                           V PEPEVKK  EV    P PPKE                     
Sbjct: 119 GDDDVEEEQEQETEVQVHPEPEVKKAPEV----PAPPKEAERQLSKKERKKKELAELEAL 174

Query: 178 XXDFGVAPKESTDGQDETQGAPQ 200
             DFGVAPKE+ +G +E+Q A Q
Sbjct: 175 LADFGVAPKEN-NGLEESQEAGQ 196


>AT2G25670.1 | Symbols:  | BEST Arabidopsis thaliana protein match
           is: copper ion binding (TAIR:AT4G32610.1); Has 43784
           Blast hits to 26928 proteins in 1799 species: Archae -
           86; Bacteria - 6347; Metazoa - 15971; Fungi - 5398;
           Plants - 1931; Viruses - 259; Other Eukaryotes - 13792
           (source: NCBI BLink). | chr2:10929062-10930619 REVERSE
           LENGTH=318
          Length = 318

 Score = 89.0 bits (219), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 68/203 (33%), Positives = 80/203 (39%), Gaps = 10/203 (4%)

Query: 1   MVGGGSRRDEGSLVLNNTNVFAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPQMFW 60
           M GGG+RRDEGS+ + +TN+FAA                               EPQ++W
Sbjct: 1   MAGGGNRRDEGSITIQSTNLFAALDTRKKKKKSDKAGKSKGSSKSREPEKEP--EPQVYW 58

Query: 61  APAPLNATSWAXXXXXXX---YYATTAPPQSVWGVSEPHHSKXXXXXXXXXXXXXXXXXX 117
           AP PL   SWA          YYATTAPPQS W  S P H+                   
Sbjct: 59  APTPLKVKSWADIDDEDDDDDYYATTAPPQSGWSTSLPSHTDSKDVHVEESESEEDILDE 118

Query: 118 XXXXXXXXXXXXXXXSVKPEPEVKKHAEVSAPPPLPPKETXXXXXXXXXXXXXXXXXXXX 177
                           V PEPEVKK  EV    P PPKE                     
Sbjct: 119 GDDDVEEEQEQETEVQVHPEPEVKKAPEV----PAPPKEAERQLSKKERKKKELAELEAL 174

Query: 178 XXDFGVAPKESTDGQDETQGAPQ 200
             DFGVAPKE+ +G +E+Q A Q
Sbjct: 175 LADFGVAPKEN-NGLEESQEAGQ 196


>AT4G32610.1 | Symbols:  | copper ion binding |
           chr4:15728376-15729897 REVERSE LENGTH=315
          Length = 315

 Score = 87.4 bits (215), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 67/199 (33%), Positives = 75/199 (37%), Gaps = 12/199 (6%)

Query: 1   MVGGGSRRDEGSLVLNNTNVFAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPQMFW 60
           MVGGG+RRDEGS+ + NTN+FAA                               EPQ+FW
Sbjct: 1   MVGGGNRRDEGSMPIQNTNLFAALDTSRKKKKSDKAGKSKASSKREDSQKEP--EPQVFW 58

Query: 61  APAPLNATSWAXXXXXXX---YYATTAPPQSVWGVSEPHHSKXXXX-XXXXXXXXXXXXX 116
           AP PL A +WA          YYATTAPPQS+W  SE  HS                   
Sbjct: 59  APTPLKAKAWADIDSDDEDDDYYATTAPPQSLWSTSEASHSDAKDVPAEEIESEEDTLDD 118

Query: 117 XXXXXXXXXXXXXXXXSVKP--EPEVKKHAEVSAPPPLPPKETXXXXXXXXXXXXXXXXX 174
                            V P  EPEVKK  EV A    PPKE                  
Sbjct: 119 GDDDDVEEDHEQGTETQVHPEAEPEVKKAPEVRA----PPKEAERQLSKKERKKKELAEL 174

Query: 175 XXXXXDFGVAPKESTDGQD 193
                DFGVA K+    QD
Sbjct: 175 EALLADFGVATKDENGQQD 193