Miyakogusa Predicted Gene

Lj1g3v1931410.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1931410.1 Non Chatacterized Hit- tr|K3XDP0|K3XDP0_SETIT
Uncharacterized protein OS=Setaria italica
GN=Si000007,44.9,2e-18,seg,NULL,
gene.Ljchr1_pseudomol_20120830.path1.gene4593.1
         (292 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G25660.1 | Symbols: emb2410 | embryo defective 2410 | chr2:10...    95   5e-20

>AT2G25660.1 | Symbols: emb2410 | embryo defective 2410 |
           chr2:10916456-10927390 REVERSE LENGTH=2166
          Length = 2166

 Score = 95.1 bits (235), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 62/192 (32%), Positives = 97/192 (50%), Gaps = 11/192 (5%)

Query: 2   KRVSREEAAVRMXXXXXXXXXXXXXXGYFVSGQHCGPSQGDDLEEIGSHSIEAAGSRPFF 61
           +RVSREEA +R               GY V  ++   ++ D+  +      E A    F 
Sbjct: 250 RRVSREEAGIRWDEERDNDARKAAEIGYIVPCKNYSQAK-DNAVKHDRRFTEIANPNSFI 308

Query: 62  CTNEGKH--DHHIMDTDIDYDMNHADLEKSFGVKFPGSGLNSWSRVMKGCWEHRFKRKAT 119
           C +E  H  + H MD  ++YD+ HA+LEKSFG+K PGSGL   S+++K   +++FK  + 
Sbjct: 309 CMDEKMHSAEQHCMDPGVEYDVKHAELEKSFGIKIPGSGLKFLSKMLKVPRKYKFKWNSK 368

Query: 120 RSDISASGVALRRRILECSALAAHTYFCDRDQSHGKFGGPSTSSGCFHSIN------HGT 173
               S S ++ ++RILE SA AA +YF    Q   K   PS  S  +  ++       G 
Sbjct: 369 SHKNSMSNISAKKRILERSASAALSYFHSLSQQ--KLDEPSVLSTNYDGLSLDMLLVKGD 426

Query: 174 HLVNSEVDRRIP 185
             ++++ DR +P
Sbjct: 427 REISNQYDRHVP 438