Miyakogusa Predicted Gene
- Lj1g3v1931370.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v1931370.1 tr|G7JBQ4|G7JBQ4_MEDTR Transcription elongation
factor A protein OS=Medicago truncatula
GN=MTR_3g108,68.35,0,TFIIS_CENTRAL,Transcription elongation factor
S-II, central domain; TFIIS_M,Transcription elongation,CUFF.28179.1
(1144 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G11430.1 | Symbols: | SPOC domain / Transcription elongation... 459 e-129
AT5G25520.2 | Symbols: | SPOC domain / Transcription elongation... 450 e-126
AT2G25640.1 | Symbols: | SPOC domain / Transcription elongation... 420 e-117
AT5G25520.1 | Symbols: | SPOC domain / Transcription elongation... 362 e-100
AT3G29639.1 | Symbols: | BEST Arabidopsis thaliana protein matc... 77 5e-14
AT2G38560.1 | Symbols: TFIIS | transcript elongation factor IIS ... 64 6e-10
AT2G42730.1 | Symbols: | F-box family protein | chr2:17787454-1... 60 9e-09
AT4G18720.1 | Symbols: | Transcription factor IIS protein | chr... 56 1e-07
>AT5G11430.1 | Symbols: | SPOC domain / Transcription elongation
factor S-II protein | chr5:3648469-3652256 FORWARD
LENGTH=873
Length = 873
Score = 459 bits (1181), Expect = e-129, Method: Compositional matrix adjust.
Identities = 354/962 (36%), Positives = 486/962 (50%), Gaps = 176/962 (18%)
Query: 117 SGSVVSNKRVAQMGPRPWLQQGSNASNRGSSQMQSPSNG-SRPQQHSGASSKRKTQMMDS 175
S S NK+V RPWLQQ S ASN + P+ S+ HS K+ TQ +S
Sbjct: 28 SASEAPNKQV-----RPWLQQLSPASN---GILHIPTKILSQETLHSLMHGKKATQT-ES 78
Query: 176 TSGKAGTPRSSNSKNQNTQLKQSPRAQSESSESVRSKMRESXXXXXXXVSQQEKPLASSE 235
K P N K ++S +A E +ESVRSKMRES V +
Sbjct: 79 APQKPAKP-VVNKKQHVPPPQRSVKAMEEVNESVRSKMRESLASALALVKK--------- 128
Query: 236 NTPNSDGNAQGKLEDSSDCAGSASAPVVTASEQRQEISQSANSSFSATVSVDHEMGEQGK 295
D + +GK + G+ PV+T QE +QS + A++SV G +
Sbjct: 129 ----DDDSPKGK-----ENIGTVETPVIT-----QENTQSFQPASPASISVPVGEGTMSE 174
Query: 296 NTASHEDLSEKCKDYEVGSTSVSNNENILSSMEVLNCDKPDFQSSYTLTTDDVPFSDSFF 355
S E +K + V +I+ +V+ + Q D+VPF+D F
Sbjct: 175 MPTSVESSVQKDSEIPV---------DIMME-DVIKFNVLKSQYDEVFPRDNVPFTDIIF 224
Query: 356 MKDDLLQGNGLSWVLSDMVEVDLGNQREGQTNIELRSEPDETGGASKEATPLPELLASQI 415
DDLL GN LSW D+ DLG E + G +++ P+LLAS+I
Sbjct: 225 PNDDLLHGNELSW---DLEVSDLG-------------ETKDYGTGGEKSFQDPKLLASKI 268
Query: 416 EAELFKLFGGVNKKYKEKGRSLLFNLKDRNNPELRERVMFGQIPPEQLCSMTAEELASKE 475
E EL+KLFGGVNKKY+E+GRSLLFNLKD+NNPELRERVM +I E+LCSMTAEELASKE
Sbjct: 269 EMELYKLFGGVNKKYRERGRSLLFNLKDKNNPELRERVMSEEISAERLCSMTAEELASKE 328
Query: 476 LSQWRIAKAEEFDKMVVLPDSDVDFRRLVKKTHKGEFQVEVDHEDNVPVEEVSGGTASAV 535
LSQWR AKAEE KMVVL D+D+D R LV+KTHKGEFQVE++ D V +VSGG S
Sbjct: 329 LSQWRQAKAEEMAKMVVLQDTDIDVRSLVRKTHKGEFQVEIEPVDRGTV-DVSGGIMS-- 385
Query: 536 RSQTTKKVVEATSPSRADIIKRDVNTGGEKNNLQKDNSFSITLSSNDGTDPMQGLMTDDA 595
RS+ + +++ +K + K + +K S T S + DPMQGL DD
Sbjct: 386 RSKRRPR-------AKSHSVKTALKDEAAKADNEKSRS---TPPSTEEIDPMQGLGIDDE 435
Query: 596 LKDPDFLPPIVSLDEFMESLDTEPPFENLPVESGKVTPIXXXXXXXXXXXXXXXXLTPSE 655
LKD +FLPPIVSLDEFMESLD+EPPFE+ ++PSE
Sbjct: 436 LKDVEFLPPIVSLDEFMESLDSEPPFES-------------------PHGNSEMQVSPSE 476
Query: 656 KADVTTDKSEKFQSTRVNSDVEEEKKVNAESGDSLSNGKNQADMKPTDDHAKERSTDDMK 715
K+D +E+G +D K KE S +
Sbjct: 477 KSD-------------------------SEAG---------SDSKSPKGSPKELSDKSLP 502
Query: 716 SASNDAV--VRPSQLHAEQKFGNDNVYSKTAVLI---KGECLWEGMLQLNISTTHSVISI 770
A + + V P + A K +D + A + KGE W+G+LQL++S+ V I
Sbjct: 503 EAKPEKIDEVTP-EFDANVKVDDDISRVEKAAALSDDKGERAWDGILQLSMSSVVPVAGI 561
Query: 771 FKSGEKTSTKDWPGFLDIKGRVRLEPFEKFLQELPQSRTRAIMVLHFVSK-GSSPEEQST 829
FKSGEK T +WP +++KGRVRL F KF+QELP+SRTRA+MV++ K G S ++ +
Sbjct: 562 FKSGEKAETSEWPAMVEVKGRVRLSGFGKFIQELPKSRTRALMVMYLAYKDGISESQRGS 621
Query: 830 IKEVAESYITDERVGFAEPVNGVELYFCPPHKKTVEMLGKILPKEQIEAVNSIDNGLIGV 889
+ EV +SY+ D+RVG+AEP +GVELY CP +T+++L K++ +EQ++ V S+D GL+GV
Sbjct: 622 LIEVIDSYVADQRVGYAEPASGVELYLCPTRGETLDLLNKVISQEQLDEVKSLDIGLVGV 681
Query: 890 VVWRKTNLTSTISPTHKHSSKRQSSFNRR--QQDTNVNANNTHKA-VPSKGIKAA----E 942
VVWR+ + P SKRQ SF+ + + + N + V K + A
Sbjct: 682 VVWRR-----AVVPKPGSGSKRQHSFSSSIGSKTSVLPVNKKQRVHVTEKPLVVASMRNH 736
Query: 943 NXXXXXXXXXXXXXXXXXXXXXTTRVEDDLPEFNFSRSSNPPPHLVQKPLGPGMVPFHSV 1002
+ +R EDDLPEFNF+ S +VP S
Sbjct: 737 HHGYVKHDTAADDDVPPGFGPVASRDEDDLPEFNFNSS---------------VVPVSSP 781
Query: 1003 SKTP--SRPAEQMRELVLKYGQNQANVSSVNWQDKFGGTIQPWNDDDDDIPEWQPQSSLN 1060
P S+ +Q+R+L+ KYG++ + + +D IPEWQP +
Sbjct: 782 QPLPAQSKSLDQVRKLIHKYGKSASTYDDDDDEDD--------------IPEWQPHVPSH 827
Query: 1061 QF 1062
Q
Sbjct: 828 QL 829
>AT5G25520.2 | Symbols: | SPOC domain / Transcription elongation
factor S-II protein | chr5:8885550-8889484 FORWARD
LENGTH=997
Length = 997
Score = 450 bits (1158), Expect = e-126, Method: Compositional matrix adjust.
Identities = 384/1041 (36%), Positives = 526/1041 (50%), Gaps = 166/1041 (15%)
Query: 83 LHQLHLPSRQSVQVGAQQLSATTPKRKAPMELSPSGSV------VSNKRVAQMGPRPWLQ 136
+ QL LP V A S T KRK+P E + SGS SNKRV + RPWL+
Sbjct: 83 MPQLQLPYSVERSVAACSNSVTG-KRKSPPESTLSGSATSEKLDASNKRVEPVHHRPWLE 141
Query: 137 Q-GSNASNRGSSQMQSPSNGSRPQQHSGASSKRKTQMMDSTSGKAGTPRSSNSKNQNTQL 195
Q S RG M P+ S +H +K K + M+ S K+G + +K Q
Sbjct: 142 QFYSECIQRG--HMPPPATLSTKTEHLPTPAK-KVRQMEPASQKSG--KQVMNKKQAGLS 196
Query: 196 KQSPRAQSESSESVRSKMRESXXXXXXXVSQQEKPLASSENT-------PNSDGNAQGKL 248
+ S + ++ +ES+RSKM+ES V + E+ +N+ P +D N
Sbjct: 197 QGSVKTLNDGNESLRSKMKESLAAALALVHEHEESPKEKKNSETEEASVPVADSNEPASA 256
Query: 249 EDSSDCAGSASAPVVTASEQRQEISQSANSSFSATVSVDHEMGEQGKNTASHEDLSEKCK 308
+S G P ++ ++ E + S S D +M N + D+ +
Sbjct: 257 CGTSVTVGEDITPAMSTRDESFEQKNGNGRTLSQESSKDTKM-----NYVNQSDVQKTQF 311
Query: 309 DYEVGSTSVSNNENILSSMEVLNCDKPDFQSSYTLTTDDVPFSDSFFMKDDLLQGNGLSW 368
D EV CD DV FSDS F D+LLQGNGLSW
Sbjct: 312 D------------------EVFPCD-------------DVRFSDSIFTGDELLQGNGLSW 340
Query: 369 VLSDMVEVDLGNQREGQTNIELRSEPDETGGASKEATPLPELLASQIEAELFKLFGGVNK 428
VL + D G + E Q + E PELLAS+IE ELFKLFGGVNK
Sbjct: 341 VLEPVS--DFG-ENETQKSFED-----------------PELLASKIELELFKLFGGVNK 380
Query: 429 KYKEKGRSLLFNLKDRNNPELRERVMFGQIPPEQLCSMTAEELASKELSQWRIAKAEEFD 488
KYKEKGRSLLFNLKD+NNPELRE VM G+I PE+LC+MTAEELASKELSQWR AKAEE
Sbjct: 381 KYKEKGRSLLFNLKDKNNPELRESVMSGKISPERLCNMTAEELASKELSQWRQAKAEEMA 440
Query: 489 KMVVLPDSDVDFRRLVKKTHKGEFQVEVDHEDNVPVEEVSGGTASAVRSQTTKKVVEATS 548
+MVVL D+D+D R LV+KTHKGEFQVE+D D+ V+ VS S S+ K + S
Sbjct: 441 EMVVLRDTDIDVRNLVRKTHKGEFQVEIDPVDSGTVD-VSAEITS--NSKPRAKAKSSKS 497
Query: 549 PSRADIIKRDVNTGGEKNNLQKDNSFSITLSSNDGTDPMQGLMTDDALKDPDFLPPIVSL 608
++A + K D N K+N + S ++TL + DPMQGL DD +KD FLPPIVSL
Sbjct: 498 STKATLKKNDSNDKNIKSN--QGTSSAVTLPPTEEIDPMQGLSMDDEMKDVGFLPPIVSL 555
Query: 609 DEFMESLDTEPPFENLPVESGKVTPIXXXXXXXXXXXXXXXXLTPSEKADVTTDKSEKFQ 668
DEFMESL++EPPF + P E P K D ++KS+
Sbjct: 556 DEFMESLNSEPPFGS-PHEH------------------------PPGKEDPASEKSDSKD 590
Query: 669 STRVNSDVEEEKKVNAESGDSLSNGKNQADMKPTDDHAKERSTDDMKSASNDAVVRPSQL 728
+ S K+ E +S+S+ + +++ T+ V+ P
Sbjct: 591 GSHSKSPSRSPKQSPKEPSESVSS---KTELEKTN------------------VISPKPD 629
Query: 729 HAEQKFGNDNVYSKTAVL--IKGECLWEGMLQLNISTTHSVISIFKSGEKTSTKDWPGFL 786
+Q G+ + T+++ IK + +W+G+LQL+ ++ SV IFKSGEK T +WP +
Sbjct: 630 AGDQLDGDVSKPENTSLVDSIKEDRIWDGILQLSSASVVSVTGIFKSGEKAKTSEWPTMV 689
Query: 787 DIKGRVRLEPFEKFLQELPQSRTRAIMVLHFVSK-GSSPEEQSTIKEVAESYITDERVGF 845
++KGRVRL F KF++ELP SR+R +MV++ V K G S ++ ++ EVA+SY+ D+RVG+
Sbjct: 690 EVKGRVRLSAFGKFVKELPLSRSRVLMVMNVVCKNGISQSQRDSLIEVAKSYVADQRVGY 749
Query: 846 AEPVNGVELYFCPPHKKTVEMLGKILPKEQIEAVN-SIDNGLIGVVVWRKTNLTSTISPT 904
AEP +GVELY CP +T+++L KI+ K+ ++ V S D GLIGVVVWR+ + S S
Sbjct: 750 AEPTSGVELYLCPTLGETLDLLSKIISKDYLDEVKCSEDIGLIGVVVWRRAVVASPGS-R 808
Query: 905 HKHSSKRQSSFNRRQQDTNVNANNTHKAV----PSKGIKAAENXXXXXXXXXXXXXXXXX 960
HK KRQ S ++ N ++V PS +
Sbjct: 809 HKPGFKRQHSSTGTKRSVLAPENQKSRSVSVTNPSVVNVESMRNHGLVGCDDDDEDMPPG 868
Query: 961 XXXXTTRVEDDLPEFNFSRSSNPPPHLVQKPLGPGMVPFHSVSKTPSRPAEQMRELVLKY 1020
+ +DDLPEFNF+ SS P + PL SR +Q+REL+LKY
Sbjct: 869 FGPVAAKDDDDLPEFNFNSSSGPVTSSPRPPLQ-------------SRSLDQVRELILKY 915
Query: 1021 GQNQANVSSVNWQDKFGGTIQPWN----DDDDDIPEWQPQSSLNQFPPQQTMRNSHL-RP 1075
G + + G+ +PW+ DDDDDIPEWQPQ + + RP
Sbjct: 916 GNSTGS-----------GSKRPWDGHDDDDDDDIPEWQPQLPPPPPDLSPQFHSGTMARP 964
Query: 1076 HTQNQPFVGSPMAAQYLQQAP 1096
Q +P G P + Q AP
Sbjct: 965 PAQ-RPVAGPPSGWKANQNAP 984
>AT2G25640.1 | Symbols: | SPOC domain / Transcription elongation
factor S-II protein | chr2:10910836-10913908 FORWARD
LENGTH=745
Length = 745
Score = 420 bits (1080), Expect = e-117, Method: Compositional matrix adjust.
Identities = 328/827 (39%), Positives = 429/827 (51%), Gaps = 137/827 (16%)
Query: 82 GLHQLHLPSRQSVQVGAQQLSATTP--KRKAPMELSPSGSVVSNKRVAQ-MGPRPWLQQG 138
G H+ V +G+ + T KRK+P L PS V NKR+A M RPW
Sbjct: 45 GRQDFHVMLPSVVGLGSVNMDKTLLPGKRKSP--LHPS---VQNKRMALPMEGRPW---- 95
Query: 139 SNASNRGSSQMQSPSNGSRPQQHSGASSKRKTQMMDSTSGKAGTPRSSNSKNQNTQLKQS 198
AS Q+ S S R Q + + + + S GK R Q
Sbjct: 96 --ASAPMPVQLSSVS--PRTQYLPASFVSKNSFVSFSKPGKQAAAR-----KPTLQKPML 146
Query: 199 PRAQSESSESVRSKMRESXXXXXXXVSQQEKPLASSENTPNSDGNAQGKLEDSSDCA--- 255
+ QSESS SVRSKMRES V Q + PN + K+ DS A
Sbjct: 147 LKPQSESSGSVRSKMRESLAGALAMVQCQM-------DVPN-----ESKMLDSETVANPL 194
Query: 256 -GSASAPVVTASEQRQEISQSANSSFSATVSVDHEMGEQGKNTASHEDLSEKCKDYEVGS 314
G S PV AS ++ S S+ T+S + T E LS +
Sbjct: 195 EGHVSGPVSAAS--GVDVMVSNGSTEMLTLSDPSPVAGISVQTVLPEILS-------IAK 245
Query: 315 TSVSNNENILSSMEVLNCDKPDFQSSYTLTTDDVPFSDSFFMKDDLLQGNGLSWVLSDMV 374
TS +V KP Q D+V +SD+ F KDDLLQGN LSW L +
Sbjct: 246 TS---------DAQVPEAVKPFVQ-------DNVSYSDNVFSKDDLLQGNDLSWALESDI 289
Query: 375 EVDLGNQREGQTNIELRSEPDETGGASKEATPLPELLASQIEAELFKLFGGVNKKYKEKG 434
E + Q E + G+ ++ P++LA +IE ELFKLFGGVNKKYKEKG
Sbjct: 290 EFTVNCQNEMIGAMA-------NDGSLEKLLLDPQVLAFEIETELFKLFGGVNKKYKEKG 342
Query: 435 RSLLFNLKDRNNPELRERVMFGQIPPEQLCSMTAEELASKELSQWRIAKAEEFDKMVVLP 494
RSLLFNLKD++NP+LRE+VM+G+I E+LCSM+AEELASKEL++WR AKAEE +MVVL
Sbjct: 343 RSLLFNLKDKSNPKLREKVMYGEIAAERLCSMSAEELASKELAEWRQAKAEEMAQMVVLQ 402
Query: 495 DSDVDFRRLVKKTHKGEFQVEVDHEDNVPVEEVSGGTASAVRSQTTKKVVEATSPSRADI 554
D++VD R LV+KTHKGEFQVEV+ D+ V EVS G +S S+T K + +PS I
Sbjct: 403 DTEVDIRSLVRKTHKGEFQVEVEPMDSGSV-EVSVGMSSINWSRT--KNFKKKTPS---I 456
Query: 555 IKRDVNTGGEKNNLQKDNSFSITLSSNDGTDPMQGLMTDDALKDPD-FLPPIVSLDEFME 613
K T G KN L SSN+ T P+ G+ DD ++ LPPIVSLDEFM
Sbjct: 457 TK----TLGVKNELN---------SSNESTGPINGVTIDDEMQAATGSLPPIVSLDEFMS 503
Query: 614 SLDTEPPFENLPVESGKVTPIXXXXXXXXXXXXXXXXLTPSEKADVTTDKSEKFQSTRVN 673
S+D+E P + + +EK S N
Sbjct: 504 SIDSESP------------------------------------SGFLSSDTEKKPSVSDN 527
Query: 674 SDVEEEKKVNAESGDSLSNGKNQADMKPTDDHAKERSTDDMKSASNDAVVRPSQLHAEQK 733
+DVEE +S+ K A++ K + + + ++ V K
Sbjct: 528 NDVEEVL---------VSSPKESANIDLCTSPVKAEALSPLTAKASSPVNAEDADIVSSK 578
Query: 734 FGNDNVYSKTAVLI-KGECLWEGMLQLNISTTHSVISIFKSGEKTSTKDWPGFLDIKGRV 792
+D T+V I GE LWEG+LQL+ ST SVI I +SGEKT+TK+WP L+IKGRV
Sbjct: 579 PSSDLKSKTTSVFIPDGERLWEGVLQLSPSTVSSVIGILRSGEKTTTKEWPILLEIKGRV 638
Query: 793 RLEPFEKFLQELPQSRTRAIMVLHFVSK-GSSPEEQSTIKEVAESYITDERVGFAEPVNG 851
RL+ FEKF++ELP SR+RA+MV+ FV K S EQ I EV +SY D RVG+AEP +G
Sbjct: 639 RLDAFEKFVRELPNSRSRAVMVMCFVCKEECSKTEQENISEVVDSYAKDGRVGYAEPASG 698
Query: 852 VELYFCPPHKKTVEMLGKILPKEQIEAVNSI-DNGLIGVVVWRKTNL 897
VELY CP +TVE+L KI+P+ Q++ + SI D+GLIGVVVWR+ +
Sbjct: 699 VELYLCPTRGRTVEILNKIVPRNQLDFLKSINDDGLIGVVVWRRHTI 745
>AT5G25520.1 | Symbols: | SPOC domain / Transcription elongation
factor S-II protein | chr5:8885550-8888157 FORWARD
LENGTH=735
Length = 735
Score = 362 bits (930), Expect = e-100, Method: Compositional matrix adjust.
Identities = 289/758 (38%), Positives = 391/758 (51%), Gaps = 130/758 (17%)
Query: 85 QLHLPSRQSVQVGAQQLSATTPKRKAPMELSPSGSV------VSNKRVAQMGPRPWLQQ- 137
QL LP V A S T KRK+P E + SGS SNKRV + RPWL+Q
Sbjct: 85 QLQLPYSVERSVAACSNSVTG-KRKSPPESTLSGSATSEKLDASNKRVEPVHHRPWLEQF 143
Query: 138 GSNASNRGSSQMQSPSNGSRPQQHSGASSKRKTQMMDSTSGKAGTPRSSNSKNQNTQLKQ 197
S RG M P+ S +H +K K + M+ S K+G + +K Q +
Sbjct: 144 YSECIQRG--HMPPPATLSTKTEHLPTPAK-KVRQMEPASQKSG--KQVMNKKQAGLSQG 198
Query: 198 SPRAQSESSESVRSKMRESXXXXXXXVSQQEKPLASSENT-------PNSDGNAQGKLED 250
S + ++ +ES+RSKM+ES V + E+ +N+ P +D N
Sbjct: 199 SVKTLNDGNESLRSKMKESLAAALALVHEHEESPKEKKNSETEEASVPVADSNEPASACG 258
Query: 251 SSDCAGSASAPVVTASEQRQEISQSANSSFSATVSVDHEMGEQGKNTASHEDLSEKCKDY 310
+S G P ++ ++ E + S S D +M N + D+ + D
Sbjct: 259 TSVTVGEDITPAMSTRDESFEQKNGNGRTLSQESSKDTKM-----NYVNQSDVQKTQFD- 312
Query: 311 EVGSTSVSNNENILSSMEVLNCDKPDFQSSYTLTTDDVPFSDSFFMKDDLLQGNGLSWVL 370
EV CD DV FSDS F D+LLQGNGLSWVL
Sbjct: 313 -----------------EVFPCD-------------DVRFSDSIFTGDELLQGNGLSWVL 342
Query: 371 SDMVEVDLGNQREGQTNIELRSEPDETGGASKEATPLPELLASQIEAELFKLFGGVNKKY 430
+ D G + E Q + E PELLAS+IE ELFKLFGGVNKKY
Sbjct: 343 EPVS--DFG-ENETQKSFED-----------------PELLASKIELELFKLFGGVNKKY 382
Query: 431 KEKGRSLLFNLKDRNNPELRERVMFGQIPPEQLCSMTAEELASKELSQWRIAKAEEFDKM 490
KEKGRSLLFNLKD+NNPELRE VM G+I PE+LC+MTAEELASKELSQWR AKAEE +M
Sbjct: 383 KEKGRSLLFNLKDKNNPELRESVMSGKISPERLCNMTAEELASKELSQWRQAKAEEMAEM 442
Query: 491 VVLPDSDVDFRRLVKKTHKGEFQVEVDHEDNVPVEEVSGGTASAVRSQTTKKVVEATSPS 550
VVL D+D+D R LV+KTHKGEFQVE+D D+ V+ VS S S+ K + S +
Sbjct: 443 VVLRDTDIDVRNLVRKTHKGEFQVEIDPVDSGTVD-VSAEITS--NSKPRAKAKSSKSST 499
Query: 551 RADIIKRDVNTGGEKNNLQKDNSFSITLSSNDGTDPMQGLMTDDALKDPDFLPPIVSLDE 610
+A + K D N K+N + S ++TL + DPMQGL DD +KD FLPPIVSLDE
Sbjct: 500 KATLKKNDSNDKNIKSN--QGTSSAVTLPPTEEIDPMQGLSMDDEMKDVGFLPPIVSLDE 557
Query: 611 FMESLDTEPPFENLPVESGKVTPIXXXXXXXXXXXXXXXXLTPSEKADVTTDKSEKFQST 670
FMESL++EPPF + P E P K D ++KS+ +
Sbjct: 558 FMESLNSEPPFGS-PHEH------------------------PPGKEDPASEKSDSKDGS 592
Query: 671 RVNSDVEEEKKVNAESGDSLSNGKNQADMKPTDDHAKERSTDDMKSASNDAVVRPSQLHA 730
S K+ E +S+S+ + +++ T+ V+ P
Sbjct: 593 HSKSPSRSPKQSPKEPSESVSS---KTELEKTN------------------VISPKPDAG 631
Query: 731 EQKFGNDNVYSKTAVL--IKGECLWEGMLQLNISTTHSVISIFKSGEKTSTKDWPGFLDI 788
+Q G+ + T+++ IK + +W+G+LQL+ ++ SV IFKSGEK T +WP +++
Sbjct: 632 DQLDGDVSKPENTSLVDSIKEDRIWDGILQLSSASVVSVTGIFKSGEKAKTSEWPTMVEV 691
Query: 789 KGRVRLEPFEKFLQELPQSRTRAIMVLHF-VSKGSSPE 825
KGRVRL F KF++ELP SR+R +M L F ++K +PE
Sbjct: 692 KGRVRLSAFGKFVKELPLSRSRVLMRLGFSLAKTWNPE 729
>AT3G29639.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: SPOC domain / Transcription elongation factor S-II
protein (TAIR:AT5G11430.1); Has 45 Blast hits to 45
proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 45; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink). |
chr3:11478732-11479733 REVERSE LENGTH=181
Length = 181
Score = 77.4 bits (189), Expect = 5e-14, Method: Composition-based stats.
Identities = 34/59 (57%), Positives = 45/59 (76%)
Query: 756 MLQLNISTTHSVISIFKSGEKTSTKDWPGFLDIKGRVRLEPFEKFLQELPQSRTRAIMV 814
+LQL++S+ V IFKSGEK T +WP +++K RVRL F KF+QELP+SRTRA+MV
Sbjct: 4 LLQLSMSSVVPVAGIFKSGEKAETSEWPAMVEVKRRVRLSGFGKFIQELPKSRTRALMV 62
>AT2G38560.1 | Symbols: TFIIS | transcript elongation factor IIS |
chr2:16134802-16136319 FORWARD LENGTH=378
Length = 378
Score = 63.9 bits (154), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 48/71 (67%)
Query: 408 PELLASQIEAELFKLFGGVNKKYKEKGRSLLFNLKDRNNPELRERVMFGQIPPEQLCSMT 467
P +A +E+ +F+ G K K RS++FNL+D NNP+LR RV+ G+I PE+L +++
Sbjct: 242 PLRVAVSVESLMFEKLGRSTGAQKLKYRSIMFNLRDSNNPDLRRRVLTGEISPEKLITLS 301
Query: 468 AEELASKELSQ 478
AE++AS + Q
Sbjct: 302 AEDMASDKRKQ 312
>AT2G42730.1 | Symbols: | F-box family protein |
chr2:17787454-17791218 REVERSE LENGTH=737
Length = 737
Score = 60.1 bits (144), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 56/91 (61%)
Query: 388 IELRSEPDETGGASKEATPLPELLASQIEAELFKLFGGVNKKYKEKGRSLLFNLKDRNNP 447
+++ SE +T ++ P ++A +E+ +F+ G +K K RS+LFN+ D NNP
Sbjct: 619 VKVASEIVDTEMKTRVTACDPSVVAVSVESAMFEKLGCFMGPHKAKYRSILFNMGDSNNP 678
Query: 448 ELRERVMFGQIPPEQLCSMTAEELASKELSQ 478
+LR +V+ G+I E+L +M +E+ S+++ +
Sbjct: 679 DLRRKVLIGEINGERLVTMERQEMGSEKIQK 709
>AT4G18720.1 | Symbols: | Transcription factor IIS protein |
chr4:10299945-10301228 FORWARD LENGTH=266
Length = 266
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 40/66 (60%)
Query: 408 PELLASQIEAELFKLFGGVNKKYKEKGRSLLFNLKDRNNPELRERVMFGQIPPEQLCSMT 467
P ++A +E +F+ G K K RS+LFN+ D NNP+LR +V+ G+I E+L M
Sbjct: 150 PWVVAVSVETAMFENLGCFMGPQKAKYRSILFNMGDSNNPDLRRKVLLGEISGERLVKME 209
Query: 468 AEELAS 473
EE+ S
Sbjct: 210 KEEMGS 215