Miyakogusa Predicted Gene

Lj1g3v1930270.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1930270.1 Non Chatacterized Hit- tr|K4AVR6|K4AVR6_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,30.22,7e-17,seg,NULL,
NODE_41396_length_1696_cov_51.495872.path1.1
         (462 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G44640.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...   437   e-123
AT3G06960.1 | Symbols: PDE320, TGD4 | pigment defective 320 | ch...   250   2e-66
AT3G06960.2 | Symbols: PDE320 | pigment defective 320 | chr3:219...   180   2e-45

>AT2G44640.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           mitochondrion, chloroplast, plasma membrane, plastid,
           chloroplast envelope; EXPRESSED IN: 23 plant structures;
           EXPRESSED DURING: 13 growth stages; CONTAINS InterPro
           DOMAIN/s: Protein of unknown function DUF3769
           (InterPro:IPR022244); BEST Arabidopsis thaliana protein
           match is: pigment defective 320 (TAIR:AT3G06960.1); Has
           49 Blast hits to 48 proteins in 15 species: Archae - 0;
           Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48;
           Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
           | chr2:18417286-18419063 FORWARD LENGTH=451
          Length = 451

 Score =  437 bits (1124), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 241/467 (51%), Positives = 321/467 (68%), Gaps = 21/467 (4%)

Query: 1   MAKLRTAIDSAFWDLNIASPQSLDGWAKAVPGDPIPLDGSVASKALRPQQFSFFKNNSFP 60
           MA L +AIDS FWD N++SPQ+L+G A++VPG+P PLDG+ AS++ R QQ S  +   FP
Sbjct: 1   MANLNSAIDSVFWDQNVSSPQTLEGTARSVPGEPFPLDGARASRSHRIQQLSLLREG-FP 59

Query: 61  LPVIPSFSPTSPKDLGSFALQSLLLRLTSHRWWLGVTGQFRPRKLITDIKNEITNADEFD 120
           L +IPS +P S K LGSF+L SLLL  +S+ WWLG+ GQF+P+KL  DIK +I+NA+E+D
Sbjct: 60  LGIIPSLAPASDKRLGSFSLNSLLLSPSSNNWWLGLVGQFKPKKLFADIKADISNAEEWD 119

Query: 121 LSTVKDVAKHFIDKSLFSIGLTSQFAFSSSTSMLFNIEGHGEXXXXXXXXXXXXXXPNHD 180
           L  VKD AKH +DKSL+SIGL +Q A  +S+S+L + E  G+                HD
Sbjct: 120 LQVVKDTAKHIVDKSLYSIGLWTQIALGTSSSLLLSTERLGDKNGLRNKLMLVHPLEKHD 179

Query: 181 LTLEAAWPQLFVDHKGKYWDVPETXXXXXXXXXXXXGLRYHLGIHKNGGNPQAINA---- 236
           LT+EAAWP LF+D+KG++WDVPE+            G+RY  G+HK+ GNPQ +NA    
Sbjct: 180 LTVEAAWPDLFLDNKGRFWDVPESLNVDVSSLVPESGVRYRFGLHKSRGNPQPVNAAGVE 239

Query: 237 TDSKPPLSLLPGLCAKAAFTYQKTKYLWRDGEVVEDLEEETRRV-APYDVRLQEPHAAVS 295
           + S  P SL+PGLCAKAA +Y+  + LWR  E   + EEE + V  PYD+RL+EPHAA+S
Sbjct: 240 SGSDAPTSLMPGLCAKAAVSYKVNRDLWRPQEKEGNTEEEDKPVFLPYDLRLKEPHAAIS 299

Query: 296 GIIGSSFASWIRNGSAEDSEVSTKSGRSRHNADLFGSVCYTFQHGKFTKDFGDLTRLDAR 355
           GI+GSS A+WI   +     V+ K  RS  +AD+FGS CYTFQ G+F+K +GDLTR+DAR
Sbjct: 300 GIVGSSLAAWI---TGRGMLVNGKK-RSPISADVFGSACYTFQKGRFSKLYGDLTRVDAR 355

Query: 356 LDISSVSALGKKIMNGFKSSTAADVNEQPSASPRLNLIFQQQVAGPVVFRADSRISLESF 415
           +D+ S  AL KK+ +      +++ ++    SPRLNLIFQQQVAGP+VF+ DS+  + + 
Sbjct: 356 VDLPSAFALAKKLFH-----ASSNNSDDTLWSPRLNLIFQQQVAGPIVFKVDSQFQVGA- 409

Query: 416 TRKHGINFEDFICSLNYSFKFLESGKLVAWYSPKRKEGMVELRFYEF 462
                   ED I SLNYS + LESGK+VAWYSPKRKEGM+ELR +EF
Sbjct: 410 -----ARMEDVIYSLNYSLRLLESGKIVAWYSPKRKEGMIELRVFEF 451


>AT3G06960.1 | Symbols: PDE320, TGD4 | pigment defective 320 |
           chr3:2194379-2196504 REVERSE LENGTH=479
          Length = 479

 Score =  250 bits (638), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 170/490 (34%), Positives = 246/490 (50%), Gaps = 41/490 (8%)

Query: 1   MAKLRTAIDSAFWDLNIASPQSLDGWAKAVPGDPIPLDGSVASKALRPQQFSFFKNNSFP 60
           M ++R   +   WDL++++P +L+G A+AVP DP+PL  S  ++  RP+Q  FF +    
Sbjct: 1   MNRMRWVGEGDIWDLDMSTPVTLEGTARAVPDDPLPLGLSRGTRLSRPKQVEFF-HRFMA 59

Query: 61  LPVIPSFSPTSPKDLGS----FALQSLLLRLTSHRWWLGVTGQFRPRKLITDIKNEIT-- 114
            P+IPSFSP  P         F+LQ +L    S+ W + + GQF  ++ +T+I       
Sbjct: 60  SPLIPSFSPIRPNTGDGGGGGFSLQRVLTLPFSNNWLVSLLGQFDVQRFVTEIDKTKAFG 119

Query: 115 -NADEFDLSTVKDVAKHFIDKSLFSIGLTSQFAFSSSTSMLFNIEGH-GEXXXXXXXXXX 172
             +     S +  + KH  DKSL+++G  S+F  S   ++L + + + G+          
Sbjct: 120 RGSSSTVASRLNTIGKHLKDKSLYALGFCSEFLLSPDDTLLLSYDAYKGDLDKNPRAKAI 179

Query: 173 XXXX-PNHDLTLEAAWPQLFVDHKGKYWDVPETXXXXXXXXXXXXGLRYHLGIHKNGGNP 231
                P H+LT EA WP LFVD  G+YWDVP +            G  YHL +H N G+P
Sbjct: 180 FNHEFPLHNLTAEAVWPGLFVDKHGEYWDVPLSMAIDLASLPAESGPSYHLCLHHNSGSP 239

Query: 232 QAINA-TDSKPPLSLLPGLCAKAAFTYQKTKYLWRDGEVVEDLEEETRRVAPYDVRLQEP 290
           + +++ T   PP SLLPGL  K+A +Y+    LWR       LE       PYDV L  P
Sbjct: 240 KKLHSDTMEVPPPSLLPGLSLKSAVSYRTNMDLWRG--TTPKLET----CKPYDVFLSSP 293

Query: 291 HAAVSGIIGSSFASW-----IRNGSAEDSE------VSTKSGRSRHNADLFGSVCYTFQH 339
           H AVSGIIGS   +      IR+    DSE      +   S  S   AD  G    T Q+
Sbjct: 294 HVAVSGIIGSVMTAAFGENSIRSKFENDSEGVGGFSLHFPSVNSGFMADALGRASLTAQY 353

Query: 340 GKFTKDFGDLTRLDARLDISSVSALGKKIMNGFKSSTAADV--NEQPS------ASPRLN 391
           G F K F DLTR  ARLD       G + + G  +S A D+  + QPS        P + 
Sbjct: 354 GNFQKFFFDLTRFHARLDFPH----GLRFLTG-ATSVAQDLLNSRQPSLEAFQKICPEVL 408

Query: 392 LIFQQQVAGPVVFRADSRISLESFTRKHGINFEDFICSLNYSFKFLESGKLVAWYSPKRK 451
           +  QQQ+ GP  F+ +S I ++     + +  +  + ++ Y+ + L S K V  YSPK+ 
Sbjct: 409 VSLQQQIVGPFSFKVESGIEIDLRNGANPVTVDKTVFAIEYALQVLLSAKAVVSYSPKQN 468

Query: 452 EGMVELRFYE 461
           E MVELRF+E
Sbjct: 469 EFMVELRFFE 478


>AT3G06960.2 | Symbols: PDE320 | pigment defective 320 |
           chr3:2195216-2196504 REVERSE LENGTH=341
          Length = 341

 Score =  180 bits (457), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 109/309 (35%), Positives = 160/309 (51%), Gaps = 17/309 (5%)

Query: 1   MAKLRTAIDSAFWDLNIASPQSLDGWAKAVPGDPIPLDGSVASKALRPQQFSFFKNNSFP 60
           M ++R   +   WDL++++P +L+G A+AVP DP+PL  S  ++  RP+Q  FF +    
Sbjct: 1   MNRMRWVGEGDIWDLDMSTPVTLEGTARAVPDDPLPLGLSRGTRLSRPKQVEFF-HRFMA 59

Query: 61  LPVIPSFSPTSPKDLGS----FALQSLLLRLTSHRWWLGVTGQFRPRKLITDIKNEIT-- 114
            P+IPSFSP  P         F+LQ +L    S+ W + + GQF  ++ +T+I       
Sbjct: 60  SPLIPSFSPIRPNTGDGGGGGFSLQRVLTLPFSNNWLVSLLGQFDVQRFVTEIDKTKAFG 119

Query: 115 -NADEFDLSTVKDVAKHFIDKSLFSIGLTSQFAFSSSTSMLFNIEGH-GEXXXXXXXXXX 172
             +     S +  + KH  DKSL+++G  S+F  S   ++L + + + G+          
Sbjct: 120 RGSSSTVASRLNTIGKHLKDKSLYALGFCSEFLLSPDDTLLLSYDAYKGDLDKNPRAKAI 179

Query: 173 XXXX-PNHDLTLEAAWPQLFVDHKGKYWDVPETXXXXXXXXXXXXGLRYHLGIHKNGGNP 231
                P H+LT EA WP LFVD  G+YWDVP +            G  YHL +H N G+P
Sbjct: 180 FNHEFPLHNLTAEAVWPGLFVDKHGEYWDVPLSMAIDLASLPAESGPSYHLCLHHNSGSP 239

Query: 232 QAINA-TDSKPPLSLLPGLCAKAAFTYQKTKYLWRDGEVVEDLEEETRRVAPYDVRLQEP 290
           + +++ T   PP SLLPGL  K+A +Y+    LWR          +     PYDV L  P
Sbjct: 240 KKLHSDTMEVPPPSLLPGLSLKSAVSYRTNMDLWRGT------TPKLETCKPYDVFLSSP 293

Query: 291 HAAVSGIIG 299
           H AVSGIIG
Sbjct: 294 HVAVSGIIG 302