Miyakogusa Predicted Gene

Lj1g3v1930240.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1930240.1 Non Chatacterized Hit- tr|C6SXN0|C6SXN0_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.32074 PE,70.15,4e-18,
,NODE_42115_length_221_cov_358.755646.path1.1
         (68 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G60210.1 | Symbols:  | GroES-like family protein | chr3:22251...    74   2e-14
AT2G44650.1 | Symbols: CHL-CPN10, CPN10 | chloroplast chaperonin...    67   2e-12

>AT3G60210.1 | Symbols:  | GroES-like family protein |
          chr3:22251443-22252709 REVERSE LENGTH=138
          Length = 138

 Score = 73.9 bits (180), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 38/69 (55%), Positives = 51/69 (73%), Gaps = 3/69 (4%)

Query: 1  MASTFVTLPTPFLH-KTSTSVPSTSFSNKRLPFLKRNSLKVNAVATKWEPAKVVPQADRV 59
          MAS+F+T+P PFL     T+ P+     + L  ++RNS ++NAV+TKWEPAKVVPQADRV
Sbjct: 1  MASSFITVPKPFLSFPIKTNAPT--LPQQTLLGIRRNSFRINAVSTKWEPAKVVPQADRV 58

Query: 60 LIRLEELAQ 68
          L+RLE L +
Sbjct: 59 LVRLEVLPE 67


>AT2G44650.1 | Symbols: CHL-CPN10, CPN10 | chloroplast chaperonin
          10 | chr2:18419521-18420510 REVERSE LENGTH=139
          Length = 139

 Score = 67.4 bits (163), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/68 (54%), Positives = 47/68 (69%), Gaps = 4/68 (5%)

Query: 1  MASTFV-TLPTPFL-HKTSTSVPSTSFSNKRLPFLKRNSLKVNAVATKWEPAKVVPQADR 58
          MASTFV +LP PF       + PST+  N  L   +R  L++ A++TKWEP KVVPQADR
Sbjct: 1  MASTFVCSLPNPFFAFPVKATTPSTA--NHTLLGSRRGCLRIKAISTKWEPTKVVPQADR 58

Query: 59 VLIRLEEL 66
          VL+RLE+L
Sbjct: 59 VLVRLEDL 66