Miyakogusa Predicted Gene

Lj1g3v1914980.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1914980.1 Non Chatacterized Hit- tr|H9MAG0|H9MAG0_PINLA
Uncharacterized protein (Fragment) OS=Pinus
lambertian,76,0.000000000000005, ,CUFF.28124.1
         (184 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G25605.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   290   4e-79

>AT2G25605.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: chloroplast; Has
           75 Blast hits to 75 proteins in 20 species: Archae - 2;
           Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 36;
           Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).
           | chr2:10899541-10900875 FORWARD LENGTH=200
          Length = 200

 Score =  290 bits (742), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 139/190 (73%), Positives = 163/190 (85%), Gaps = 7/190 (3%)

Query: 1   MSFGSSLL-SPPHAF------WLSFSKSTTSRFKAAASNVPDFLSADWFESRKKRPFGPR 53
           MSFGS +L SPP +       +  + +   +  +A++S+VPDFLSADW ESR+KRPFGPR
Sbjct: 1   MSFGSLVLPSPPSSLSANVKHFNGYGRLNRNLVRASSSDVPDFLSADWLESRRKRPFGPR 60

Query: 54  LDFSAEDAVHYQLEALKYNDQPRQDYGIEVMYRFGGFDPFERSTYFGPFFDLGQFERFRR 113
           LDFSAEDAV +QL+ALKYND PR DYGIEVMYRF GFDPFERSTYFGPFFDLGQFERFRR
Sbjct: 61  LDFSAEDAVRHQLDALKYNDHPRDDYGIEVMYRFAGFDPFERSTYFGPFFDLGQFERFRR 120

Query: 114 IFHHSTYRVLLGHKERKIMSSLFVEENKYMQRVWIRGSRPEEEEIFQLTMTQRVGGCWDG 173
           IFHHS+YRVLLGHK+RK++SSLFVEEN++ QR+WI+G+RPEEEEIF+ TM QR+GG WDG
Sbjct: 121 IFHHSSYRVLLGHKDRKLLSSLFVEENRFKQRIWIQGNRPEEEEIFEFTMFQRIGGSWDG 180

Query: 174 YWLTESLLHD 183
           YWLTESLLHD
Sbjct: 181 YWLTESLLHD 190