Miyakogusa Predicted Gene

Lj1g3v1914950.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1914950.1 CUFF.28128.1
         (134 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G52740.1 | Symbols: HTA9 | histone H2A protein 9 | chr1:19645...   187   2e-48
AT3G54560.1 | Symbols: HTA11 | histone H2A 11 | chr3:20196532-20...   176   4e-45
AT2G38810.2 | Symbols: HTA8 | histone H2A 8 | chr2:16219444-1622...   167   2e-42
AT2G38810.3 | Symbols: HTA8 | histone H2A 8 | chr2:16219444-1622...   167   2e-42
AT2G38810.1 | Symbols: HTA8 | histone H2A 8 | chr2:16219444-1622...   167   2e-42
AT4G13570.1 | Symbols: HTA4 | histone H2A 4 | chr4:7884516-78856...   130   3e-31
AT4G13570.2 | Symbols: HTA4 | histone H2A 4 | chr4:7884582-78856...   128   1e-30
AT1G08880.1 | Symbols: HTA5, H2AXA, G-H2AX, GAMMA-H2AX | Histone...   107   2e-24
AT1G54690.1 | Symbols: HTA3, H2AXB, G-H2AX, GAMMA-H2AX | gamma h...   107   3e-24
AT3G20670.1 | Symbols: HTA13 | histone H2A 13 | chr3:7229472-722...   105   9e-24
AT5G02560.1 | Symbols: HTA12 | histone H2A 12 | chr5:575437-5764...   105   1e-23
AT4G27230.2 | Symbols: HTA2 | histone H2A 2 | chr4:13637515-1363...   105   1e-23
AT4G27230.1 | Symbols: HTA2 | histone H2A 2 | chr4:13637515-1363...   105   1e-23
AT5G54640.1 | Symbols: HTA1, RAT5, ATHTA1 | Histone superfamily ...   105   1e-23
AT1G51060.1 | Symbols: HTA10 | histone H2A 10 | chr1:18926948-18...   104   2e-23
AT5G59870.1 | Symbols: HTA6 | histone H2A 6 | chr5:24115605-2411...   101   2e-22
AT5G27670.1 | Symbols: HTA7 | histone H2A 7 | chr5:9792807-97933...   100   2e-22
AT5G02560.2 | Symbols: HTA12 | histone H2A 12 | chr5:575437-5764...    92   8e-20

>AT1G52740.1 | Symbols: HTA9 | histone H2A protein 9 |
           chr1:19645409-19646221 FORWARD LENGTH=134
          Length = 134

 Score =  187 bits (474), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 98/134 (73%), Positives = 103/134 (76%)

Query: 1   MSGKGAKGLITGKTPXXXXXXXXXXXXXXXXXXGLQFPVGRIHRLLKSRATASGRVGXXX 60
           MSGKGAKGLI GK                    GLQFPVGR+HRLLK+R+TA GRVG   
Sbjct: 1   MSGKGAKGLIMGKPSGSDKDKDKKKPITRSSRAGLQFPVGRVHRLLKTRSTAHGRVGATA 60

Query: 61  XXXXXXILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120
                 ILEYLTAEVLELAGNASKDLKVKRI+PRHLQLAIRGDEELDTLIKGTIAGGGVI
Sbjct: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRISPRHLQLAIRGDEELDTLIKGTIAGGGVI 120

Query: 121 PHIHKSLINKSSKE 134
           PHIHKSLINKS+KE
Sbjct: 121 PHIHKSLINKSAKE 134


>AT3G54560.1 | Symbols: HTA11 | histone H2A 11 |
           chr3:20196532-20197466 FORWARD LENGTH=136
          Length = 136

 Score =  176 bits (446), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 93/136 (68%), Positives = 100/136 (73%), Gaps = 2/136 (1%)

Query: 1   MSGKGAKGLITGKTPXXXXXXXXXXXX--XXXXXXGLQFPVGRIHRLLKSRATASGRVGX 58
           M+GKG KGL+  KT                     G+QFPVGRIHR LK+R +A GRVG 
Sbjct: 1   MAGKGGKGLVAAKTMAANKDKDKDKKKPISRSARAGIQFPVGRIHRQLKTRVSAHGRVGA 60

Query: 59  XXXXXXXXILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 118
                   ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG
Sbjct: 61  TAAVYTASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120

Query: 119 VIPHIHKSLINKSSKE 134
           VIPHIHKSLINK++KE
Sbjct: 121 VIPHIHKSLINKTTKE 136


>AT2G38810.2 | Symbols: HTA8 | histone H2A 8 |
           chr2:16219444-16220679 REVERSE LENGTH=136
          Length = 136

 Score =  167 bits (423), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 91/136 (66%), Positives = 98/136 (72%), Gaps = 2/136 (1%)

Query: 1   MSGKGAKGLITGKTPXX--XXXXXXXXXXXXXXXXGLQFPVGRIHRLLKSRATASGRVGX 58
           M+GKG KGL+  KT                     G+QFPVGRIHR LK R +A GRVG 
Sbjct: 1   MAGKGGKGLLAAKTTAAAANKDSVKKKSISRSSRAGIQFPVGRIHRQLKQRVSAHGRVGA 60

Query: 59  XXXXXXXXILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 118
                   ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG
Sbjct: 61  TAAVYTASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120

Query: 119 VIPHIHKSLINKSSKE 134
           VIPHIHKSL+NK +K+
Sbjct: 121 VIPHIHKSLVNKVTKD 136


>AT2G38810.3 | Symbols: HTA8 | histone H2A 8 |
           chr2:16219444-16220679 REVERSE LENGTH=136
          Length = 136

 Score =  167 bits (423), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 91/136 (66%), Positives = 98/136 (72%), Gaps = 2/136 (1%)

Query: 1   MSGKGAKGLITGKTPXX--XXXXXXXXXXXXXXXXGLQFPVGRIHRLLKSRATASGRVGX 58
           M+GKG KGL+  KT                     G+QFPVGRIHR LK R +A GRVG 
Sbjct: 1   MAGKGGKGLLAAKTTAAAANKDSVKKKSISRSSRAGIQFPVGRIHRQLKQRVSAHGRVGA 60

Query: 59  XXXXXXXXILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 118
                   ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG
Sbjct: 61  TAAVYTASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120

Query: 119 VIPHIHKSLINKSSKE 134
           VIPHIHKSL+NK +K+
Sbjct: 121 VIPHIHKSLVNKVTKD 136


>AT2G38810.1 | Symbols: HTA8 | histone H2A 8 |
           chr2:16219444-16220679 REVERSE LENGTH=136
          Length = 136

 Score =  167 bits (423), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 91/136 (66%), Positives = 98/136 (72%), Gaps = 2/136 (1%)

Query: 1   MSGKGAKGLITGKTPXX--XXXXXXXXXXXXXXXXGLQFPVGRIHRLLKSRATASGRVGX 58
           M+GKG KGL+  KT                     G+QFPVGRIHR LK R +A GRVG 
Sbjct: 1   MAGKGGKGLLAAKTTAAAANKDSVKKKSISRSSRAGIQFPVGRIHRQLKQRVSAHGRVGA 60

Query: 59  XXXXXXXXILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 118
                   ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG
Sbjct: 61  TAAVYTASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120

Query: 119 VIPHIHKSLINKSSKE 134
           VIPHIHKSL+NK +K+
Sbjct: 121 VIPHIHKSLVNKVTKD 136


>AT4G13570.1 | Symbols: HTA4 | histone H2A 4 | chr4:7884516-7885664
           FORWARD LENGTH=118
          Length = 118

 Score =  130 bits (326), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 64/91 (70%), Positives = 68/91 (74%)

Query: 34  GLQFPVGRIHRLLKSRATASGRVGXXXXXXXXXILEYLTAEVLELAGNASKDLKVKRITP 93
           G  F V RIH+ LK+R +A   VG         ILEYLT EVL+LA N SKDLKVKRITP
Sbjct: 28  GEMFQVARIHKQLKNRVSAHSSVGATDVVYMTSILEYLTTEVLQLAENTSKDLKVKRITP 87

Query: 94  RHLQLAIRGDEELDTLIKGTIAGGGVIPHIH 124
           RHLQLAIRGDEELDTLIKGTI GG VIPHIH
Sbjct: 88  RHLQLAIRGDEELDTLIKGTIIGGSVIPHIH 118


>AT4G13570.2 | Symbols: HTA4 | histone H2A 4 | chr4:7884582-7885664
           FORWARD LENGTH=124
          Length = 124

 Score =  128 bits (322), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 63/90 (70%), Positives = 69/90 (76%)

Query: 35  LQFPVGRIHRLLKSRATASGRVGXXXXXXXXXILEYLTAEVLELAGNASKDLKVKRITPR 94
           ++F V RIH+ LK+R +A   VG         ILEYLT EVL+LA N SKDLKVKRITPR
Sbjct: 35  IRFQVARIHKQLKNRVSAHSSVGATDVVYMTSILEYLTTEVLQLAENTSKDLKVKRITPR 94

Query: 95  HLQLAIRGDEELDTLIKGTIAGGGVIPHIH 124
           HLQLAIRGDEELDTLIKGTI GG VIPHIH
Sbjct: 95  HLQLAIRGDEELDTLIKGTIIGGSVIPHIH 124


>AT1G08880.1 | Symbols: HTA5, H2AXA, G-H2AX, GAMMA-H2AX | Histone
           superfamily protein | chr1:2847144-2847676 REVERSE
           LENGTH=142
          Length = 142

 Score =  107 bits (268), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 57/96 (59%), Positives = 68/96 (70%), Gaps = 2/96 (2%)

Query: 34  GLQFPVGRIHRLLKSRATASGRVGXXXXXXXXXILEYLTAEVLELAGNASKDLKVKRITP 93
           GLQFPVGRI R LKS   A  RVG         +LEYL AEVLELAGNA++D K  RI P
Sbjct: 30  GLQFPVGRIARFLKSGKYAE-RVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKTRIVP 88

Query: 94  RHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLI 128
           RH+QLA+R DEEL  L+   TIA GGV+P+IH++L+
Sbjct: 89  RHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLL 124


>AT1G54690.1 | Symbols: HTA3, H2AXB, G-H2AX, GAMMA-H2AX | gamma
           histone variant H2AX | chr1:20414607-20415206 REVERSE
           LENGTH=142
          Length = 142

 Score =  107 bits (266), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 56/96 (58%), Positives = 68/96 (70%), Gaps = 2/96 (2%)

Query: 34  GLQFPVGRIHRLLKSRATASGRVGXXXXXXXXXILEYLTAEVLELAGNASKDLKVKRITP 93
           GLQFPVGRI R LK+   A  RVG         +LEYL AEVLELAGNA++D K  RI P
Sbjct: 30  GLQFPVGRIARFLKAGKYAE-RVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKTRIVP 88

Query: 94  RHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLI 128
           RH+QLA+R DEEL  L+   TIA GGV+P+IH++L+
Sbjct: 89  RHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLL 124


>AT3G20670.1 | Symbols: HTA13 | histone H2A 13 |
           chr3:7229472-7229963 FORWARD LENGTH=132
          Length = 132

 Score =  105 bits (262), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 57/100 (57%), Positives = 69/100 (69%), Gaps = 2/100 (2%)

Query: 34  GLQFPVGRIHRLLKSRATASGRVGXXXXXXXXXILEYLTAEVLELAGNASKDLKVKRITP 93
           GLQFPVGRI R LK+   A+ RVG         +LEYL AEVLELAGNA++D K  RI P
Sbjct: 24  GLQFPVGRIARFLKNGKYAT-RVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVP 82

Query: 94  RHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSS 132
           RH+QLA+R DEEL  L+   TIA GGV+P+IH  L+ K +
Sbjct: 83  RHIQLAVRNDEELSKLLGDVTIANGGVMPNIHSLLLPKKA 122


>AT5G02560.1 | Symbols: HTA12 | histone H2A 12 | chr5:575437-576456
           FORWARD LENGTH=153
          Length = 153

 Score =  105 bits (261), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 59/102 (57%), Positives = 72/102 (70%), Gaps = 2/102 (1%)

Query: 34  GLQFPVGRIHRLLKSRATASGRVGXXXXXXXXXILEYLTAEVLELAGNASKDLKVKRITP 93
           GLQFPVGRI R LK +   S RVG         +LEYL AEVLELAGNA++D K  RI P
Sbjct: 32  GLQFPVGRIGRYLK-KGRYSKRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIP 90

Query: 94  RHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSSKE 134
           RH+ LA+R DEEL TL+KG TIA GGV+P+I+  L+ K S++
Sbjct: 91  RHVLLAVRNDEELGTLLKGVTIAHGGVLPNINPILLPKKSEK 132


>AT4G27230.2 | Symbols: HTA2 | histone H2A 2 |
           chr4:13637515-13638325 REVERSE LENGTH=131
          Length = 131

 Score =  105 bits (261), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 57/100 (57%), Positives = 68/100 (68%), Gaps = 2/100 (2%)

Query: 34  GLQFPVGRIHRLLKSRATASGRVGXXXXXXXXXILEYLTAEVLELAGNASKDLKVKRITP 93
           GLQFPVGRI R LK+   A  RVG         +LEYL AEVLELAGNA++D K  RI P
Sbjct: 24  GLQFPVGRIARFLKAGKYAE-RVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVP 82

Query: 94  RHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSS 132
           RH+QLA+R DEEL  L+   TIA GGV+P+IH  L+ K +
Sbjct: 83  RHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKA 122


>AT4G27230.1 | Symbols: HTA2 | histone H2A 2 |
           chr4:13637515-13638325 REVERSE LENGTH=131
          Length = 131

 Score =  105 bits (261), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 57/100 (57%), Positives = 68/100 (68%), Gaps = 2/100 (2%)

Query: 34  GLQFPVGRIHRLLKSRATASGRVGXXXXXXXXXILEYLTAEVLELAGNASKDLKVKRITP 93
           GLQFPVGRI R LK+   A  RVG         +LEYL AEVLELAGNA++D K  RI P
Sbjct: 24  GLQFPVGRIARFLKAGKYAE-RVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVP 82

Query: 94  RHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSS 132
           RH+QLA+R DEEL  L+   TIA GGV+P+IH  L+ K +
Sbjct: 83  RHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKA 122


>AT5G54640.1 | Symbols: HTA1, RAT5, ATHTA1 | Histone superfamily
           protein | chr5:22196540-22197279 FORWARD LENGTH=130
          Length = 130

 Score =  105 bits (261), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 57/100 (57%), Positives = 68/100 (68%), Gaps = 2/100 (2%)

Query: 34  GLQFPVGRIHRLLKSRATASGRVGXXXXXXXXXILEYLTAEVLELAGNASKDLKVKRITP 93
           GLQFPVGRI R LK+   A  RVG         +LEYL AEVLELAGNA++D K  RI P
Sbjct: 24  GLQFPVGRIARFLKAGKYAE-RVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVP 82

Query: 94  RHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSS 132
           RH+QLA+R DEEL  L+   TIA GGV+P+IH  L+ K +
Sbjct: 83  RHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKA 122


>AT1G51060.1 | Symbols: HTA10 | histone H2A 10 |
           chr1:18926948-18927443 FORWARD LENGTH=132
          Length = 132

 Score =  104 bits (259), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 57/100 (57%), Positives = 67/100 (67%), Gaps = 2/100 (2%)

Query: 34  GLQFPVGRIHRLLKSRATASGRVGXXXXXXXXXILEYLTAEVLELAGNASKDLKVKRITP 93
           GLQFPVGRI R LK    A  RVG         +LEYL AEVLELAGNA++D K  RI P
Sbjct: 24  GLQFPVGRIARFLKKGKYAE-RVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVP 82

Query: 94  RHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSS 132
           RH+QLA+R DEEL  L+   TIA GGV+P+IH  L+ K +
Sbjct: 83  RHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKT 122


>AT5G59870.1 | Symbols: HTA6 | histone H2A 6 |
           chr5:24115605-24116144 REVERSE LENGTH=150
          Length = 150

 Score =  101 bits (251), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 57/100 (57%), Positives = 68/100 (68%), Gaps = 2/100 (2%)

Query: 34  GLQFPVGRIHRLLKSRATASGRVGXXXXXXXXXILEYLTAEVLELAGNASKDLKVKRITP 93
           GLQFPVGRI R LK +   + R+G         +LEYL AEVLELAGNA++D K  RI P
Sbjct: 32  GLQFPVGRITRFLK-KGRYAQRLGGGAPVYMAAVLEYLAAEVLELAGNAARDNKKSRIIP 90

Query: 94  RHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSS 132
           RHL LAIR DEEL  L+ G TIA GGV+P+I+  L+ K S
Sbjct: 91  RHLLLAIRNDEELGKLLSGVTIAHGGVLPNINSVLLPKKS 130


>AT5G27670.1 | Symbols: HTA7 | histone H2A 7 | chr5:9792807-9793365
           REVERSE LENGTH=150
          Length = 150

 Score =  100 bits (250), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 57/100 (57%), Positives = 67/100 (67%), Gaps = 2/100 (2%)

Query: 34  GLQFPVGRIHRLLKSRATASGRVGXXXXXXXXXILEYLTAEVLELAGNASKDLKVKRITP 93
           GLQFPVGRI R LK +   + R G         +LEYL AEVLELAGNA++D K  RI P
Sbjct: 33  GLQFPVGRIARYLK-KGRYALRYGSGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRINP 91

Query: 94  RHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSS 132
           RHL LAIR DEEL  L+ G TIA GGV+P+I+  L+ K S
Sbjct: 92  RHLCLAIRNDEELGRLLHGVTIASGGVLPNINPVLLPKKS 131


>AT5G02560.2 | Symbols: HTA12 | histone H2A 12 | chr5:575437-576456
           FORWARD LENGTH=177
          Length = 177

 Score = 92.4 bits (228), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 59/126 (46%), Positives = 72/126 (57%), Gaps = 26/126 (20%)

Query: 34  GLQFPVGRIHRLLKSRATASGRVGXXXXXXXXXILEYLTAE------------------- 74
           GLQFPVGRI R LK +   S RVG         +LEYL AE                   
Sbjct: 32  GLQFPVGRIGRYLK-KGRYSKRVGTGAPVYLAAVLEYLAAENSCGFCSVASLTIYRCRMS 90

Query: 75  -----VLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLI 128
                VLELAGNA++D K  RI PRH+ LA+R DEEL TL+KG TIA GGV+P+I+  L+
Sbjct: 91  SSDFRVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGTLLKGVTIAHGGVLPNINPILL 150

Query: 129 NKSSKE 134
            K S++
Sbjct: 151 PKKSEK 156