Miyakogusa Predicted Gene

Lj1g3v1911740.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1911740.2 Non Chatacterized Hit- tr|D8RRM1|D8RRM1_SELML
Putative uncharacterized protein (Fragment)
OS=Selagin,63.24,8e-18,DnaJ/Hsp40 cysteine-rich domain,Heat shock
protein DnaJ, cysteine-rich domain; no description,Heat s,CUFF.28110.2
         (131 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G47650.1 | Symbols:  | DnaJ/Hsp40 cysteine-rich domain superf...   131   1e-31

>AT3G47650.1 | Symbols:  | DnaJ/Hsp40 cysteine-rich domain
           superfamily protein | chr3:17569576-17570262 FORWARD
           LENGTH=136
          Length = 136

 Score =  131 bits (330), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 68/130 (52%), Positives = 85/130 (65%), Gaps = 6/130 (4%)

Query: 3   PSLCL-TPRSSPTLGHPQQLETHKKQKHCIRVNRLFQGPPTDKFSFLTAKAANGNQQNTK 61
           P+ C  +P  +P   H     T+      ++   L Q   +  F     KAAN N Q TK
Sbjct: 12  PTFCFQSPSKNPKPSH--FFSTNDNTSSLVQKRELLQTSRSQSFE---VKAANNNPQGTK 66

Query: 62  PNSVICADCDGNGAVVCSQCKGNGVNSVDIFNGQFKAGDSCWLCGGRKEMLCGNCNGAGF 121
           PNS++CA+C+G G V CSQCKG GVN +D FNGQFKAG  CWLC G+KE+LCG+CNGAGF
Sbjct: 67  PNSLVCANCEGEGCVACSQCKGGGVNLIDHFNGQFKAGALCWLCRGKKEVLCGDCNGAGF 126

Query: 122 IGGFLSTYDQ 131
           IGGFLST+D+
Sbjct: 127 IGGFLSTFDE 136