Miyakogusa Predicted Gene
- Lj1g3v1911730.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v1911730.1 tr|G7JB32|G7JB32_MEDTR Rna-dependent RNA
polymerase OS=Medicago truncatula GN=MTR_3g107390 PE=4
SV=1,81.15,0,RNA-DEPENDENT RNA POLYMERASE,RNA-dependent RNA
polymerase, eukaryotic-type; RdRP,RNA-dependent RNA p,CUFF.28114.1
(1201 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G49500.1 | Symbols: RDR6, SGS2, SDE1 | RNA-dependent RNA poly... 1663 0.0
AT1G14790.1 | Symbols: RDR1, ATRDRP1 | RNA-dependent RNA polymer... 597 e-170
AT4G11130.1 | Symbols: RDR2, SMD1 | RNA-dependent RNA polymerase... 549 e-156
AT2G05370.2 | Symbols: | FUNCTIONS IN: molecular_function unkno... 119 1e-26
AT2G05370.1 | Symbols: | BEST Arabidopsis thaliana protein matc... 118 3e-26
AT2G19930.1 | Symbols: | RNA-dependent RNA polymerase family pr... 97 9e-20
AT2G19910.1 | Symbols: | RNA-dependent RNA polymerase family pr... 84 7e-16
AT2G19920.1 | Symbols: | RNA-dependent RNA polymerase family pr... 73 1e-12
>AT3G49500.1 | Symbols: RDR6, SGS2, SDE1 | RNA-dependent RNA
polymerase 6 | chr3:18349193-18353205 REVERSE LENGTH=1196
Length = 1196
Score = 1663 bits (4306), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 809/1205 (67%), Positives = 965/1205 (80%), Gaps = 13/1205 (1%)
Query: 1 MDLGGSEKESVVTQVSIGGFDSEVKAHDLAEFLENRIGLVYRCRLKTSWTPPESYPEFNV 60
M G+ K+SVVTQVSIGGF A L ++LE+ +G+V+RCRLKTSWTPP SYP F +
Sbjct: 1 MGSEGNMKKSVVTQVSIGGFGESTTAKQLTDYLEDEVGIVWRCRLKTSWTPPGSYPNFEI 60
Query: 61 ADTALVKRTDDYKKVEPHAFVHFALPESATEALDASGSCDLMWEGKPLKVISGPQNPYFL 120
ADT+ + D+YKKVEPHAFVHFA+ ESA A+DA+G C+L+ +G+PLKV GP+NPY L
Sbjct: 61 ADTSNIPSIDEYKKVEPHAFVHFAVFESAGRAMDAAGQCNLILDGQPLKVSLGPKNPYSL 120
Query: 121 NQRRRKETPFKLSDVLVEIGTLVSPEEFVVAWRGPEKGVNLLVDPFDRMCRLRFSRDTAF 180
NQRRR P+KL+ + +EIGTLVS ++F V+WR +GV+ LVDPFD C+ F + TAF
Sbjct: 121 NQRRRTTVPYKLAGITLEIGTLVSRDDFFVSWRA--EGVDFLVDPFDNTCKFCFRKSTAF 178
Query: 181 SIKQNEKKAVIKCDFKVEFMVRDIYEVRRYDDTSYRVVLLHLASSPLVWYRTADDDIEES 240
S K AVI CD+K+E +VRDI VR+Y V++L LASSP VWYRTADDDI ++
Sbjct: 179 SFKDAVMHAVINCDYKLELLVRDIQTVRQYKTLHGFVLILQLASSPRVWYRTADDDIYDT 238
Query: 241 VSFDLLDDDDPWIRTTDFTPSGAIGRCNFYRISIPPRHGAKLMKAMAYLNFQRVQEFPLK 300
V DLLDDDDPWIRTTDFT GAIGRC+ YR+ I PR+ KL A+ Y +RVQE ++
Sbjct: 239 VPGDLLDDDDPWIRTTDFTQVGAIGRCHSYRVLISPRYENKLRTALDYFRMRRVQEERVR 298
Query: 301 RPLRIQDEPNFGVPMSDDFFYIHCQEGITFDIMFLVNAVIHKGILNPYSLSDRFFEVLRN 360
P RI++EP FG P+SD FF IH +EGI+F+IMFLVN+V+H+G+ N + L++RFF++LRN
Sbjct: 299 WPPRIRNEPCFGEPVSDHFFCIHHKEGISFEIMFLVNSVLHRGVFNQFQLTERFFDLLRN 358
Query: 361 QPQEVNVAALKHLCSYKRPVFDAAKRLKTVQEWLLRNPKLYQSSKQADDIVEVRRLVITP 420
QP++VN+A+LKHLC+YKRPVFDA KRLK VQEW+ +NPKL S +Q++DI E+RRLVITP
Sbjct: 359 QPKDVNIASLKHLCTYKRPVFDAYKRLKLVQEWIQKNPKLLGSHEQSEDISEIRRLVITP 418
Query: 421 TRAYCVPPEHELSNRVLRRYREVSNRFLRVTFMDEGMQTINVNALNYYVAPIVKEITSNS 480
TRAYC+PPE ELSNRVLRRY+ V+ RFLRVTFMDE MQTIN N L+Y+VAPIVK++TS+S
Sbjct: 419 TRAYCLPPEVELSNRVLRRYKAVAERFLRVTFMDESMQTINSNVLSYFVAPIVKDLTSSS 478
Query: 481 FPQKTRIYKRVKTILEEGFHFCDRKYAFLAFSSNQLRDRSAWFFAEDDKIKCDGIRDWMG 540
F QKT ++KRVK+IL +GF C RKY+FLAFS+NQLRDRSAWFFAED K + I+ WMG
Sbjct: 479 FSQKTYVFKRVKSILTDGFKLCGRKYSFLAFSANQLRDRSAWFFAEDGKTRVSDIKTWMG 538
Query: 541 RFSNRNVAKCAARMGQCFSSTYATVEVPATEVNSMLPDIERNTYVFSDGIGIITPDLAGE 600
+F ++NVAKCAARMG CFSSTYATV+V EV++ +PDIERN YVFSDGIG ITPDLA E
Sbjct: 539 KFKDKNVAKCAARMGLCFSSTYATVDVMPHEVDTEVPDIERNGYVFSDGIGTITPDLADE 598
Query: 601 VAEKLKLDI--APSAYQIRYAGFKGVVASWPAKGDGIRLSLRTSMNKFQSSHTTLEICAW 658
V EKLKLD+ +P AYQIRYAGFKGVVA WP+K DGIRL+LR SM KF S HT LEIC+W
Sbjct: 599 VMEKLKLDVHYSPCAYQIRYAGFKGVVARWPSKSDGIRLALRDSMKKFFSKHTILEICSW 658
Query: 659 TRFQPGFLNRQIITLLSALEVSDEVFWKMQEVMISKLNQMLVNADVAFDVLTKSCAEHGN 718
TRFQPGFLNRQIITLLS L V DE+FW MQE M+ KLN++L + DVAF+VLT SCAE GN
Sbjct: 659 TRFQPGFLNRQIITLLSVLGVPDEIFWDMQESMLYKLNRILDDTDVAFEVLTASCAEQGN 718
Query: 719 AAAIMLSCGFSPQTEPHLKGMLTSIRAAQLWGLREKSRIFVSSGRWLMGVLDELGVLEQG 778
AAIMLS GF P+TEPHL+GML+S+R AQLWGLREKSRIFV+SGRWLMG LDE G+LE G
Sbjct: 719 TAAIMLSAGFKPKTEPHLRGMLSSVRIAQLWGLREKSRIFVTSGRWLMGCLDEAGILEHG 778
Query: 779 QCFVQVSTPSLENCFSKHGSRFSETKS-LQVVKGYVVIAKNPCLHPGDVRILEAIDSPDL 837
QCF+QVS PS+ENCFSKHGSRF ETK+ L+VVKGYV IAKNPCLHPGDVRILEA+D P L
Sbjct: 779 QCFIQVSKPSIENCFSKHGSRFKETKTDLEVVKGYVAIAKNPCLHPGDVRILEAVDVPQL 838
Query: 838 HHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDDNLIPPSKRSWIPMEYDAQESKLQ 897
HH+YDCL+FPQKGDRPHTNEASGSDLDGDLYFV WD LIPP+++S+ M YDA E K
Sbjct: 839 HHMYDCLIFPQKGDRPHTNEASGSDLDGDLYFVAWDQKLIPPNRKSYPAMHYDAAEEKSL 898
Query: 898 TRKVTSRDIIDFFVRNMVNENLGAICNAHVVHADSSDHGALDEKCIILAEKAAAAVDFPK 957
R V +DIIDFF RN+ NE LG ICNAHVVHAD S++GA+DE+C++LAE AA AVDFPK
Sbjct: 899 GRAVNHQDIIDFFARNLANEQLGTICNAHVVHADRSEYGAMDEECLLLAELAATAVDFPK 958
Query: 958 TGKLVIMPSELKPKLYPDFMGKDQHMSYKSKKILGRLYRRIKDAYDKDIDA-PELNYVTG 1016
TGK+V MP LKPKLYPDFMGK+ + +YKS KILGRLYRR+K+ YD+D +A E +
Sbjct: 959 TGKIVSMPFHLKPKLYPDFMGKEDYQTYKSNKILGRLYRRVKEVYDEDAEASSEESTDPS 1018
Query: 1017 AIPYDTELEVPGSADFIADAWKQKCSYDGQLSGLLGQYKVKREEEVVTGQIWSMPKYNSR 1076
AIPYD LE+PG D I +AW KC YDGQL GLLGQYKV++EEE+VTG IWSMPKY S+
Sbjct: 1019 AIPYDAVLEIPGFEDLIPEAWGHKCLYDGQLIGLLGQYKVQKEEEIVTGHIWSMPKYTSK 1078
Query: 1077 KQGELKERLKHSYSALKKEFRQTFEKLDSDFRELGEEEKNLLYEKKASAWYQVTYHPTWV 1136
KQGELKERLKHSY++LKKEFR+ FE+ D L EEEKN+LYEKKASAWY VTYHP WV
Sbjct: 1079 KQGELKERLKHSYNSLKKEFRKVFEETIPDHENLSEEEKNILYEKKASAWYHVTYHPEWV 1138
Query: 1137 KKSLELQDKSPENLESNSLGETVMLSFPWIAVDYLARTKIRNRGFGRFDSTKPVGSLAKY 1196
KKSLELQD + MLSF WIA DYLAR KIR+R G DS KPV SLAK+
Sbjct: 1139 KKSLELQD-------PDESSHAAMLSFAWIAADYLARIKIRSREMGSIDSAKPVDSLAKF 1191
Query: 1197 LSERL 1201
L++RL
Sbjct: 1192 LAQRL 1196
>AT1G14790.1 | Symbols: RDR1, ATRDRP1 | RNA-dependent RNA polymerase 1
| chr1:5094317-5097817 REVERSE LENGTH=1107
Length = 1107
Score = 597 bits (1538), Expect = e-170, Method: Compositional matrix adjust.
Identities = 376/1068 (35%), Positives = 577/1068 (54%), Gaps = 94/1068 (8%)
Query: 132 LSDVLVEIGTLVSPEEFVVAWRGPEKGVNLLVDPFDRMCRLRFSRDTAFSIKQNEKKAVI 191
+S + + G VS ++F+ W + V+ + M +L FS FS Q
Sbjct: 97 ISGLKMFFGCQVSTKKFLTLWSAQDVCVSFGIG----MRKLHFS----FSWYQK------ 142
Query: 192 KCDFKVEFMVRDIYEVRRYD--DTSYRVVLLHLASSPLVWYRTADDDIEESVSFDLLD-- 247
D+++E +I+++ + S + +++ + +P ++ + +D ++ F ++D
Sbjct: 143 --DYRLELSYENIWQIDLHSPQGRSSKFLVIQVIGAPKIFEK---EDQPINLLFGIMDFY 197
Query: 248 ---DDDPWIRTTDFTPSGAIGRCNFYRISIPPRHGA-KLMKAMAYLNFQRVQEFPLKRPL 303
D+ WIRTTDFT S IG+ + + +P + A R F ++
Sbjct: 198 SDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDFRENFANYAEHRASSFLIESGS 257
Query: 304 RIQDEPNFGVPMSDDFFYIHCQEGITFDIMFLVNAVIHKGILNPYSLSDRFFEVLRNQPQ 363
N VP+ D + F+I+F +N ++ L+ +L F+ +L +
Sbjct: 258 SYSSNANTLVPVVDP----PPGFSLPFEILFKLNTLVQNACLSGPALDLDFYRLLNQKKY 313
Query: 364 EVNVA--ALKHLCSYKRPVFDAAKRLK-TVQEWLLRNPKLYQSSKQADD-IVEVRRLVIT 419
+ + L+ L ++ A L+ ++W+ + + DD +V + R+ +T
Sbjct: 314 DRALIDHCLEKLFHLGECCYEPAHWLRDEYKKWISKGKLPLSPTISLDDGLVYMYRVQVT 373
Query: 420 PTRAYCVPPEHELSNRVLRRYREVSNRFLRVTFMDEGMQTINVNALNYYVAPIVKEITSN 479
P R Y PE +SNRVLR Y + N FLRV+F+DE ++ + L+ +
Sbjct: 374 PARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLEKVRSMDLS----------PRS 423
Query: 480 SFPQKTRIYKRVKTILEEGFHFCDRKYAFLAFSSNQLRDRSAWFFAEDDKIKCDGIRDWM 539
S ++T++Y R+ ++L +G D+K+ FLAFSS+QLR+ SAW FA D+I IR WM
Sbjct: 424 STQRRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAPIDRITAAHIRAWM 483
Query: 540 GRFSN-RNVAKCAARMGQCFSSTYATVEVPATEVNSMLPDIE----RNTYVFSDGIGIIT 594
G F + RNVAK AAR+GQ FSS+ T+ V + E+ ++PD+E YVFSDGIG I+
Sbjct: 484 GDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIE-VIPDVEIISLGTRYVFSDGIGKIS 542
Query: 595 PDLAGEVAEKLKL-DIAPSAYQIRYAGFKGVVASWPAKGDGIRLSLRTSMNKFQSSHTTL 653
+ A +VA K L + +PSA+QIRY G+KGVVA P +LSLR SM+KF+S +T L
Sbjct: 543 AEFARKVARKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSK--KLSLRKSMSKFESENTKL 600
Query: 654 EICAWTRFQPGFLNRQIITLLSALEVSDEVFWKMQEVMISKLNQMLVNADVAFDVL-TKS 712
++ AW+++QP ++NRQ+ITLLS L V+D VF K Q ++ +L+ +L + A + L +
Sbjct: 601 DVLAWSKYQPCYMNRQLITLLSTLGVTDSVFEKKQREVVDRLDAILTHPLEAHEALGLMA 660
Query: 713 CAEHGNAAAIMLSCGFSPQTEPHLKGMLTSIRAAQLWGLREKSRIFVSSGRWLMGVLDEL 772
E+ N ++ CG+ P EP L ML + RA++L LR K+RIF+S GR +MG LDE
Sbjct: 661 PGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISGGRSMMGCLDET 720
Query: 773 GVLEQGQCFVQVSTPSLENCFSKHGSRFSETKSLQVVKGYVVIAKNPCLHPGDVRILEAI 832
LE GQ VQ S P + G RF ++ G VV+AKNPCLHPGDVR+L+A+
Sbjct: 721 RTLEYGQVVVQYSDPM------RPGRRF-------IITGPVVVAKNPCLHPGDVRVLQAV 767
Query: 833 DSPDLHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDDNLIPPSKRSWIPMEYDAQ 892
+ P L+H+ DC+VFPQKG RPH NE SGSDLDGD+YFV WD L+PP R+ PM+Y +
Sbjct: 768 NVPALNHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQELVPP--RTSEPMDYTPE 825
Query: 893 ESKLQTRKVTSRDIIDFFVRNMVNENLGAICNAHVVHADSSDHGALDEKCIILAEKAAAA 952
+++ VT ++ ++F +VN++LG I NAH AD A + CI LA+K + A
Sbjct: 826 PTQILDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKAFSDPCIELAKKFSTA 885
Query: 953 VDFPKTGKLVIMPSELKPKLYPDFMGKDQHMSYKSKKILGRLYRRIKDAYDKDIDAPELN 1012
VDFPKTG ++P L K YPDFM K +Y+SK ++G+L+R +K+ I
Sbjct: 886 VDFPKTGVAAVIPQHLYVKEYPDFMEKPDKPTYESKNVIGKLFREVKERAPPLISIKSFT 945
Query: 1013 YVTGAIPYDTELEVPGSADFIADAWKQKCSYDGQLSGLLGQYKVKREEEVVTGQIWSMPK 1072
+ YD ++EV G +++ +A+ QK +YD +L L+ Y +K E E+++G I M K
Sbjct: 946 LDVASKSYDKDMEVDGFEEYVDEAFYQKANYDFKLGNLMDYYGIKTEAEILSGGIMRMSK 1005
Query: 1073 YNSRKQGELKERLKHSYSALKKEFRQTFEKLDSDFRELGEEEKNLLYEKKASAWYQVTYH 1132
++++ E + + AL+KE F E+ KASAWY VTYH
Sbjct: 1006 SFTKRRD--AESIGRAVRALRKETLSLFNA----------SEEEENESAKASAWYHVTYH 1053
Query: 1133 PTWVKKSLELQDKSPENLESNSLGETVMLSFPWIAVDYLARTKIRNRG 1180
++ L + L LSF W D L R K N G
Sbjct: 1054 SSYW------------GLYNEGLNRDHFLSFAWCVYDKLVRIKKTNLG 1089
>AT4G11130.1 | Symbols: RDR2, SMD1 | RNA-dependent RNA polymerase 2 |
chr4:6780522-6784390 FORWARD LENGTH=1133
Length = 1133
Score = 549 bits (1415), Expect = e-156, Method: Compositional matrix adjust.
Identities = 367/1022 (35%), Positives = 532/1022 (52%), Gaps = 96/1022 (9%)
Query: 195 FKVEFMVRDIYEVRRY----DDTSYRVVLLHLASSPLVWYRT----ADDDIEESVSFDLL 246
+K+E DI E D + LL L P V+ R A + F
Sbjct: 154 YKIEVRFEDIIETLSCCVNGDASEIDAFLLKLKYGPKVFKRVTVHIATKFKSDRYRFCKE 213
Query: 247 DDDDPWIRTTDFTPSGAIGRCNFYRISIPPRHGAKLMKAMAYLNFQRVQEFPLKRPLRIQ 306
D D WIRTTDF+ S +IG + + + +G+ ++ + L + R L
Sbjct: 214 DFDFMWIRTTDFSGSKSIGTSTCFCLEV--HNGSTMLDIFSGLPYYREDTLSLT----YV 267
Query: 307 DEPNFG-----VPMSDDFFYIHCQEGITF--DIMFLVNAVIHKGILNPYSLSD-RFFEVL 358
D F VP+ + G+ F +I+F +NA++H ++ ++ SD ++L
Sbjct: 268 DGKTFASAAQIVPLLNAAIL-----GLEFPYEILFQLNALVHAQKISLFAASDMELIKIL 322
Query: 359 RNQPQEVNVAALKHLCSYKR----PVFDAAKRLKTVQEWLLRNPKLYQSSKQADDIVEVR 414
R E + LK L PVF ++++V + + +P +I+ +
Sbjct: 323 RGMSLETALVILKKLHQQSSICYDPVFFVKTQMQSVVKKMKHSPASAYKRLTEQNIMSCQ 382
Query: 415 RLVITPTRAYCVPPEHELSNRVLRRYREVSNRFLRVTFMDEGMQTINVNALN------YY 468
R +TP++ Y + PE E +N V++ + E + F+RVTF++E + NAL+ Y+
Sbjct: 383 RAYVTPSKIYLLGPELETANYVVKNFAEHVSDFMRVTFVEEDWSKLPANALSVNSKEGYF 442
Query: 469 VAPIVKEITSNSFPQKTRIYKRVKTILEEGFHFCDRKYAFLAFSSNQLRDRSAWFFAEDD 528
V P +T IY RV +IL EG +++ FLAFS++QLR S W FA ++
Sbjct: 443 VKP-----------SRTNIYNRVLSILGEGITVGPKRFEFLAFSASQLRGNSVWMFASNE 491
Query: 529 KIKCDGIRDWMGRFSN-RNVAKCAARMGQCFSSTYATVEVPATEVNSMLPDIERNT---- 583
K+K + IR+WMG F R+++KCAARMGQ FS++ T+ V A +V +PDIE T
Sbjct: 492 KVKAEDIREWMGCFRKIRSISKCAARMGQLFSASRQTLIVRAQDVEQ-IPDIEVTTDGAD 550
Query: 584 YVFSDGIGIITPDLAGEVAEKLKLDIAPSAYQIRYAGFKGVVASWPAKGDGIRLSLRTSM 643
Y FSDGIG I+ A +VA+K L PSA+QIRY G+KGV+A + +LSLR SM
Sbjct: 551 YCFSDGIGKISLAFAKQVAQKCGLSHVPSAFQIRYGGYKGVIAV--DRSSFRKLSLRDSM 608
Query: 644 NKFQSSHTTLEICAWTRFQPGFLNRQIITLLSALEVSDEVFWKMQEVMISKLNQMLVNAD 703
KF S++ L + WT P FLNR+II LLS L + D +F MQ V +S L ML + D
Sbjct: 609 LKFDSNNRMLNVTRWTESMPCFLNREIICLLSTLGIEDAMFEAMQAVHLSMLGNMLEDRD 668
Query: 704 VAFDVLTKSCAEHG-NAAAIMLSCGFSPQTEPHLKGMLTSIRAAQLWGLREKSRIFVSSG 762
A +VL K E+ N ML G++P +EP+L ML +QL L+ + RI V G
Sbjct: 669 AALNVLQKLSGENSKNLLVKMLLQGYAPSSEPYLSMMLRVHHESQLSELKSRCRILVPKG 728
Query: 763 RWLMGVLDELGVLEQGQCFVQVSTPSLENCFSKHGSRFSET-KSLQVVKGYVVIAKNPCL 821
R L+G +DE+G+LE GQ +V+V+ E S+ S F + + VV G VV+ KNPCL
Sbjct: 729 RILIGCMDEMGILEYGQVYVRVTLTKAE-LKSRDQSYFRKIDEETSVVIGKVVVTKNPCL 787
Query: 822 HPGDVRILEAIDSPDLHH--LYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDDNLIPP 879
HPGD+R+L+AI DC++FPQKG+RPH NE SG DLDGD +FV+WD+ +IP
Sbjct: 788 HPGDIRVLDAIYEVHFEEKGYLDCIIFPQKGERPHPNECSGGDLDGDQFFVSWDEKIIPS 847
Query: 880 SKRSWIPMEYDAQESKLQTRKVTSRDIIDFFVRNMVNENLGAICNAHVVHADSSDHGALD 939
PM+Y +L VT +I FFV M+++ LG I AH+VHAD A
Sbjct: 848 EMDP--PMDYAGSRPRLMDHDVTLEEIHKFFVDYMISDTLGVISTAHLVHADRDPEKARS 905
Query: 940 EKCIILAEKAAAAVDFPKTGKLVIMPSELKPKLYPDFMGKDQHMSYKSKKILGRLYRRIK 999
+KC+ LA + AVDF KTG MP LKP+ +PDF+ + + +Y S+ + G+LYR +K
Sbjct: 906 QKCLELANLHSRAVDFAKTGAPAEMPYALKPREFPDFLERFEKPTYISESVFGKLYRAVK 965
Query: 1000 DAYDKDIDAPELNYVTGAIPYDTELEVPGSADFIADAWKQKCSYDGQLSGLLGQYKVKRE 1059
+ + PE + YD LE G FI A + Y +L+ L+ Y E
Sbjct: 966 SSLAQ--RKPEAE-SEDTVAYDVTLEEAGFESFIETAKAHRDMYGEKLTSLMIYYGAANE 1022
Query: 1060 EEVVTGQIWSMPKY---NSRKQGELKERLKHSYSALKKEFRQTFEKLDSDFRELGEEEKN 1116
EE++TG + + Y ++R+ G++K+R+ S L KE FEK D E++K
Sbjct: 1023 EEILTGILKTKEMYLARDNRRYGDMKDRITLSVKDLHKEAMGWFEKSCED-----EQQK- 1076
Query: 1117 LLYEKKASAWYQVTYHPTWVKKSLELQDKSPENLESNSLGETVMLSFPWIAVDYLARTKI 1176
+K ASAWY VTY+P + L LSFPWI D L K
Sbjct: 1077 ---KKLASAWYYVTYNPNHRDEKL------------------TFLSFPWIVGDVLLDIKA 1115
Query: 1177 RN 1178
N
Sbjct: 1116 EN 1117
>AT2G05370.2 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; BEST Arabidopsis thaliana
protein match is: RNA-dependent RNA polymerase 6
(TAIR:AT3G49500.1); Has 31 Blast hits to 31 proteins in
11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink). | chr2:1961012-1961443 REVERSE
LENGTH=143
Length = 143
Score = 119 bits (298), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 66/151 (43%), Positives = 95/151 (62%), Gaps = 12/151 (7%)
Query: 1 MDLGGSEKESVVTQVSIGGFDSEVKAHDLAEFLENRIGL-VYRCRLKTSWTPPESYPEFN 59
M+ G+ K VV+QV+I GF K +L ++LEN++GL V+RCRLKTSWTP SYP F
Sbjct: 1 MESEGNMKNLVVSQVTISGFGESTKTKELTDYLENKVGLLVWRCRLKTSWTPHGSYPNFE 60
Query: 60 VADTALVKRTDDYKKVEPHAFVHFALPESATEALDASGSCDLMWEGKPLKVISGPQNPYF 119
+ DT+ + + D Y++V PHAFVH ++ +DA+ L+ G+PLK +NPY
Sbjct: 61 IIDTSNIPKFDCYERVVPHAFVHC---DAHKSLMDAAEQSKLILGGQPLKFSLSSENPYT 117
Query: 120 LNQRRRKETPFKLSDVLVEIGTLVSPEEFVV 150
LN P+KL+ V +EIGT VS ++F +
Sbjct: 118 LN-------PYKLTGVSLEIGT-VSQDDFFL 140
>AT2G05370.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: RNA-dependent RNA polymerase 6 (TAIR:AT3G49500.1);
Has 65 Blast hits to 37 proteins in 13 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 65;
Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
| chr2:1960413-1961425 REVERSE LENGTH=211
Length = 211
Score = 118 bits (295), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 63/138 (45%), Positives = 87/138 (63%), Gaps = 11/138 (7%)
Query: 8 KESVVTQVSIGGFDSEVKAHDLAEFLENRIGL-VYRCRLKTSWTPPESYPEFNVADTALV 66
K VV+QV+I GF K +L ++LEN++GL V+RCRLKTSWTP SYP F + DT+ +
Sbjct: 2 KNLVVSQVTISGFGESTKTKELTDYLENKVGLLVWRCRLKTSWTPHGSYPNFEIIDTSNI 61
Query: 67 KRTDDYKKVEPHAFVHFALPESATEALDASGSCDLMWEGKPLKVISGPQNPYFLNQRRRK 126
+ D Y++V PHAFVH ++ +DA+ L+ G+PLK +NPY LN
Sbjct: 62 PKFDCYERVVPHAFVHC---DAHKSLMDAAEQSKLILGGQPLKFSLSSENPYTLN----- 113
Query: 127 ETPFKLSDVLVEIGTLVS 144
P+KL+ V +EIGTL S
Sbjct: 114 --PYKLTGVSLEIGTLAS 129
Score = 101 bits (252), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/91 (57%), Positives = 60/91 (65%)
Query: 205 YEVRRYDDTSYRVVLLHLASSPLVWYRTADDDIEESVSFDLLDDDDPWIRTTDFTPSGAI 264
Y + Y T + + LASSP VWYRTADDDI E+ + DLLDD+DPWIRTTDFT SGAI
Sbjct: 110 YTLNPYKLTGVSLEIGTLASSPRVWYRTADDDIYETSAVDLLDDNDPWIRTTDFTQSGAI 169
Query: 265 GRCNFYRISIPPRHGAKLMKAMAYLNFQRVQ 295
RC YR+ I PR K K + YL QRV
Sbjct: 170 RRCLGYRVFISPRDHNKWTKVLDYLKTQRVN 200
>AT2G19930.1 | Symbols: | RNA-dependent RNA polymerase family
protein | chr2:8607533-8612441 REVERSE LENGTH=977
Length = 977
Score = 96.7 bits (239), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 84/356 (23%), Positives = 154/356 (43%), Gaps = 46/356 (12%)
Query: 666 LNRQIITLLSALEVSDEVFWKMQEVMISKLNQMLVNADVAFDVLTKSCAEHGNAAAIMLS 725
L++ ++ LLS + +E F + + + + N A + AA M+
Sbjct: 504 LSKNLVALLSYGGIPNEFFLDILLNTLEESKSIFYNKRAALNAALNYGEMDDQNAAQMIL 563
Query: 726 CGFSPQTEPHLKGMLTSIRAAQLWGLREKSRIFVSSGRWLMGVLDELGVLEQGQCFVQVS 785
G P EPHLK L+ + + L+ ++ V+ +LMG +D G L++ + V +
Sbjct: 564 VGI-PLDEPHLKNYLSILLKTEKNDLK-AGKLPVTESYYLMGTVDPTGALKEDEVCVILE 621
Query: 786 TPSLENCFSKHGSRFSETKSLQVVKGYVVIAKNPCLHPGDVRILEAIDSPDLHHLYD--- 842
+ + G V++ +NP LH GD+ IL+A L
Sbjct: 622 SGQ--------------------ISGEVLVYRNPGLHFGDIHILKATYVKALEEYVGNSK 661
Query: 843 -CLVFPQKGDRPHTNEASGSDLDGDLYFVTWDDNLI-------------PPSKRSWIPME 888
+ FPQKG R +E +G D DGD+YF++ + L+ PPSK +
Sbjct: 662 FAVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPELLENFKPSEPWVSLTPPSKSNSGRAP 721
Query: 889 YDAQESKLQTRKVTSRDIIDFFVRNMVN---ENLGAICNAHVVHAD--SSDHGALDEKCI 943
+L+ F N++ ++ I + ++ D + + + +K +
Sbjct: 722 SQLSPEELEEELFEMFLTAGFHASNVIGIAADSWLTIMDRFLILGDDRAEEKAEMKKKML 781
Query: 944 ILAEKAAAAVDFPKTGKLVIMPSELKPKLYPDFMGKDQHMSYKSKKILGRLYRRIK 999
L + A+D PK G V +P++LKP ++P +M +D+ ++S ILG ++ +K
Sbjct: 782 ELIDIYYDALDAPKKGDKVYLPNKLKPDIFPHYMERDK--KFQSTSILGLIFDFVK 835
>AT2G19910.1 | Symbols: | RNA-dependent RNA polymerase family
protein | chr2:8595820-8600757 REVERSE LENGTH=992
Length = 992
Score = 83.6 bits (205), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 82/355 (23%), Positives = 147/355 (41%), Gaps = 46/355 (12%)
Query: 666 LNRQIITLLSALEVSDEVFWKMQEVMISKLNQMLVNADVAFDVLTKSCAEHGNAAAIMLS 725
L+R ++ LLS V ++ F + + + + + AF + A I++
Sbjct: 517 LSRNLVALLSYGGVPNDFFLNILRNTLEESKTIFYSERAAFKAAINYGDDQYTADMILVG 576
Query: 726 CGFSPQTEPHLKGMLTSIRAAQLWGLREKSRIFVSSGRWLMGVLDELGVLEQGQCFVQVS 785
P EP+LK L+ + + L+ R + ++MG +D G L++
Sbjct: 577 I---PLDEPYLKDRLSYLLKTERNALKA-GRFPIDESYYIMGTVDPTGELKEN------- 625
Query: 786 TPSLENCFSKHGSRFSETKSLQVVKGYVVIAKNPCLHPGDVRILEAIDSPDLHHLYD--- 842
E C H + S G V++ +NP LH GD+ +L+A L
Sbjct: 626 ----EICVILHSGQIS---------GDVLVYRNPGLHFGDIHVLKATYVKALEDYVGNAK 672
Query: 843 -CLVFPQKGDRPHTNEASGSDLDGDLYFVTWDDNLIPPSKRS--WIPME-----YDAQES 894
+ FPQKG R +E +G D DGD+YF++ + L+ K S W+ Y ++
Sbjct: 673 FAVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPKLLEHFKPSEPWVSSSKPSKIYCGRKP 732
Query: 895 KLQTRKVTSRDIIDFFVR---------NMVNENLGAICNAHVVHADSSDHGALDEKCIIL 945
+ + ++ F++ M + I + + D S + K IL
Sbjct: 733 SELSEEELEEELFKMFLKARFCKRDVIGMAADCWLGIMDPFLTLGDESAKEKYERKKNIL 792
Query: 946 A--EKAAAAVDFPKTGKLVIMPSELKPKLYPDFMGKDQHMSYKSKKILGRLYRRI 998
+ A+D PK G V +P +L+ K +P +M +D ++S ILG ++ +
Sbjct: 793 KLIDIYYDALDAPKKGAKVDLPPDLEIKNFPHYMERDPKRDFRSTSILGLIFDTV 847
>AT2G19920.1 | Symbols: | RNA-dependent RNA polymerase family
protein | chr2:8602222-8606887 REVERSE LENGTH=927
Length = 927
Score = 73.2 bits (178), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 82/359 (22%), Positives = 158/359 (44%), Gaps = 58/359 (16%)
Query: 666 LNRQIITLLSALEVSDEVFWKMQEVMISKLNQMLVNADVAFDVLTKSCAEHGNA----AA 721
L++ ++ LLS V ++ F + + K + A K+ +GN A
Sbjct: 508 LSKNLVALLSYGGVPNDFFLDILLNTLEKKKTIFFKVRAA----GKAALHYGNMDDKNAL 563
Query: 722 IMLSCGFSPQTEPHLKGMLTSIRAAQLWGLREKSRIFVSSGRWLMGVLDELGVLEQGQCF 781
M+ G P EP+LK L+ + + L+ ++ + +LMG +D G L++ +
Sbjct: 564 QMIMAGI-PLDEPYLKHYLSKLLKLEKDDLK-AGKLPIDESYYLMGTVDPTGELKEDEV- 620
Query: 782 VQVSTPSLENCFSKHGSRFSETKSLQVVKGYVVIAKNPCLHPGDVRILEAIDSPDLHHLY 841
S ++++ V++ +NP LH GD+ IL+A L
Sbjct: 621 ----------------SGLAKSQD-------VLVYRNPGLHFGDIHILKATYVKSLEQYV 657
Query: 842 D----CLVFPQKGDRPHTNEASGSDLDGDLYFVTWDDNLIPPSKRS--WIPME-----YD 890
+ FPQKG R +E +G D DGD+YF++ + L+ K S W+ Y
Sbjct: 658 GNSKYGVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPKLLEHYKPSEPWVSSSPRSKIYT 717
Query: 891 AQESKLQTRKVTSRDIIDFFVRNMVNEN--LG-------AICNAHVVHADSS--DHGALD 939
++ + + ++ F++ + + +G AI + + D + + +
Sbjct: 718 GRQPSELSPEQLEEELFKIFLKTGFSPSSVIGQAADSWLAIMDRFLTLGDENVKEKAEMK 777
Query: 940 EKCIILAEKAAAAVDFPKTGKLVIMPSELKPKLYPDFMGKDQHMSYKSKKILGRLYRRI 998
+K + L + A+D PKTG V +P ++K L+P +M +++ ++KS ILG ++ +
Sbjct: 778 KKMLKLTDIYYDAIDAPKTGTEVNLPLDVKVDLFPHYMERNK--TFKSTSILGLIFDTV 834