Miyakogusa Predicted Gene
- Lj1g3v1911640.4
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v1911640.4 Non Chatacterized Hit- tr|B6TQN1|B6TQN1_MAIZE
Putative uncharacterized protein OS=Zea mays PE=2
SV=1,40.13,1e-18,DUF4050,Domain of unknown function
DUF4050,CUFF.28111.4
(166 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G25360.2 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 147 3e-36
AT5G25360.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 147 3e-36
AT4G32342.1 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 120 3e-28
AT3G15770.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 117 3e-27
AT3G15770.2 | Symbols: | unknown protein; BEST Arabidopsis thal... 115 1e-26
AT1G15350.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 110 6e-25
AT1G15350.2 | Symbols: | unknown protein; BEST Arabidopsis thal... 110 6e-25
AT1G15350.3 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 95 2e-20
AT3G54880.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 87 5e-18
AT5G03440.2 | Symbols: | unknown protein; BEST Arabidopsis thal... 78 3e-15
AT5G03440.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 78 3e-15
>AT5G25360.2 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 15 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT4G32342.1). | chr5:8799934-8802333 REVERSE
LENGTH=169
Length = 169
Score = 147 bits (371), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 75/144 (52%), Positives = 98/144 (68%), Gaps = 5/144 (3%)
Query: 22 PKPISMDEASKGLITQGSAINNYDRSEDIWSSSSFYMDHSAGYSQRSFSSITIPNHPSDP 81
P +++DE SKGL QG + SED WS+S+ MD+S SQRS SSI+ N+ S
Sbjct: 29 PLIVAVDEPSKGLRIQGRLVKKPSVSEDFWSTSTCEMDNSTLQSQRSMSSISFTNNTSTS 88
Query: 82 QSSAGNQIDHPEEFVNHGLRLWKQTRKQWVGNKKTERRMQVGESRISWNATYESLLGTTR 141
S++ +P EFVNHGL LW QTR+QW+ N ++++ +V E ISWNATYESLLG +
Sbjct: 89 ASTS-----NPTEFVNHGLNLWNQTRQQWLANGTSQKKAKVREPTISWNATYESLLGMNK 143
Query: 142 PFRQPIPLGEMVEFLVDIWELEGL 165
F +PIPL EMV+FLVD+WE EGL
Sbjct: 144 RFSRPIPLPEMVDFLVDVWEQEGL 167
>AT5G25360.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT4G32342.1); Has 1807 Blast hits to 1807 proteins
in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736;
Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes
- 339 (source: NCBI BLink). | chr5:8799934-8802333
REVERSE LENGTH=169
Length = 169
Score = 147 bits (371), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 75/144 (52%), Positives = 98/144 (68%), Gaps = 5/144 (3%)
Query: 22 PKPISMDEASKGLITQGSAINNYDRSEDIWSSSSFYMDHSAGYSQRSFSSITIPNHPSDP 81
P +++DE SKGL QG + SED WS+S+ MD+S SQRS SSI+ N+ S
Sbjct: 29 PLIVAVDEPSKGLRIQGRLVKKPSVSEDFWSTSTCEMDNSTLQSQRSMSSISFTNNTSTS 88
Query: 82 QSSAGNQIDHPEEFVNHGLRLWKQTRKQWVGNKKTERRMQVGESRISWNATYESLLGTTR 141
S++ +P EFVNHGL LW QTR+QW+ N ++++ +V E ISWNATYESLLG +
Sbjct: 89 ASTS-----NPTEFVNHGLNLWNQTRQQWLANGTSQKKAKVREPTISWNATYESLLGMNK 143
Query: 142 PFRQPIPLGEMVEFLVDIWELEGL 165
F +PIPL EMV+FLVD+WE EGL
Sbjct: 144 RFSRPIPLPEMVDFLVDVWEQEGL 167
>AT4G32342.1 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN:
cellular_component unknown; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G25360.2);
Has 30201 Blast hits to 17322 proteins in 780 species:
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi -
3422; Plants - 5037; Viruses - 0; Other Eukaryotes -
2996 (source: NCBI BLink). | chr4:15615184-15616200
REVERSE LENGTH=161
Length = 161
Score = 120 bits (302), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 71/155 (45%), Positives = 88/155 (56%), Gaps = 16/155 (10%)
Query: 16 GCLGCFPKP----ISMDEASKGLITQGSAIN-NYDRSEDIWSSSSFYMDHSAGYSQRSFS 70
C GC + + +DE SKGL QG + + S+D WS+S+ MDH+ +S
Sbjct: 16 NCFGCCNRERRLVVEVDEPSKGLKIQGKIVKKDSASSDDFWSTSTCDMDHNITIQSQS-- 73
Query: 71 SITIPNHPSDPQSSAGNQIDHPEEFVNHGLRLWKQTRKQWVGNKKTERRMQVGESRISWN 130
N P DPQ S N EFVNHGL LW TR+QW T ++ V E ISWN
Sbjct: 74 ----SNPPFDPQCSTSNST----EFVNHGLILWNHTRQQW-RECLTRQQCLVPEPAISWN 124
Query: 131 ATYESLLGTTRPFRQPIPLGEMVEFLVDIWELEGL 165
+TY+SLL T + F QPIPL EMV FLVD+WE EGL
Sbjct: 125 STYDSLLSTNKLFPQPIPLKEMVHFLVDVWEEEGL 159
>AT3G15770.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT5G25360.2); Has 143 Blast hits to 143 proteins
in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0;
Fungi - 0; Plants - 136; Viruses - 0; Other Eukaryotes -
7 (source: NCBI BLink). | chr3:5340243-5341216 FORWARD
LENGTH=162
Length = 162
Score = 117 bits (293), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 69/163 (42%), Positives = 92/163 (56%), Gaps = 15/163 (9%)
Query: 14 GKGCLGCFPKPISMDEASKGLITQGSAINNYD----------RSEDIWSSSSFYMDHSAG 63
G CL CF K + L + D SED W++++ M+ +A
Sbjct: 2 GSSCLACFDKSKAKTSVDVPLNGTKDVLVEEDWSELRKPSVVASEDFWTNTTLDMESNA- 60
Query: 64 YSQRSFSSITIPNHPSDPQSSAGNQIDHPEEFVNHGLRLWKQTRKQWVGNKKTERRMQVG 123
S SSI+ N D Q G+ + P EFVNHGL LW QTR+QWVG+K++E R VG
Sbjct: 61 --HGSVSSISTTNLTIDSQG-CGSSSNEPAEFVNHGLVLWNQTRQQWVGDKRSESRKSVG 117
Query: 124 -ESRISWNATYESLLGTTRPFRQPIPLGEMVEFLVDIWELEGL 165
E ++ N TYESLLG+ + F +PIPL EMV+FLV++WE EGL
Sbjct: 118 REPILNENVTYESLLGSNKRFPRPIPLDEMVQFLVEVWEEEGL 160
>AT3G15770.2 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT1G15350.1); Has 35333 Blast hits to 34131
proteins in 2444 species: Archae - 798; Bacteria -
22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses
- 0; Other Eukaryotes - 9610 (source: NCBI BLink). |
chr3:5340243-5341216 FORWARD LENGTH=161
Length = 161
Score = 115 bits (289), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 68/160 (42%), Positives = 91/160 (56%), Gaps = 15/160 (9%)
Query: 17 CLGCFPKPISMDEASKGLITQGSAINNYD----------RSEDIWSSSSFYMDHSAGYSQ 66
CL CF K + L + D SED W++++ M+ +A
Sbjct: 4 CLACFDKSKAKTSVDVPLNGTKDVLVEEDWSELRKPSVVASEDFWTNTTLDMESNA---H 60
Query: 67 RSFSSITIPNHPSDPQSSAGNQIDHPEEFVNHGLRLWKQTRKQWVGNKKTERRMQVG-ES 125
S SSI+ N D Q G+ + P EFVNHGL LW QTR+QWVG+K++E R VG E
Sbjct: 61 GSVSSISTTNLTIDSQG-CGSSSNEPAEFVNHGLVLWNQTRQQWVGDKRSESRKSVGREP 119
Query: 126 RISWNATYESLLGTTRPFRQPIPLGEMVEFLVDIWELEGL 165
++ N TYESLLG+ + F +PIPL EMV+FLV++WE EGL
Sbjct: 120 ILNENVTYESLLGSNKRFPRPIPLDEMVQFLVEVWEEEGL 159
>AT1G15350.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT3G15770.2); Has 148 Blast hits to 148 proteins
in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0;
Fungi - 0; Plants - 141; Viruses - 0; Other Eukaryotes -
7 (source: NCBI BLink). | chr1:5278481-5279486 REVERSE
LENGTH=154
Length = 154
Score = 110 bits (274), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 69/154 (44%), Positives = 92/154 (59%), Gaps = 8/154 (5%)
Query: 16 GCLGCFPKPISMDEASKGLITQGSA--INNYDRSEDIWSSSSFYMDHSAGYSQRSFSSIT 73
GC+GC+ + S + K + A SED WS+S+ MD+ SQ S SS
Sbjct: 3 GCVGCYREHRSTAASLKDPPSNSIARPCKKPSVSEDFWSTSTVDMDNITFPSQGSLSSS- 61
Query: 74 IPNHPSDPQSSAGNQIDHPEEFVNHGLRLWKQTRKQWVGNKKTERRMQVGE-SRISWN-A 131
N D QS+A N + P E+VN GL LW QTR++WVG K + + ++++WN A
Sbjct: 62 --NQTFDSQSAARNS-NAPPEYVNQGLLLWNQTRERWVGKDKPNNPVDHNQGAKLNWNTA 118
Query: 132 TYESLLGTTRPFRQPIPLGEMVEFLVDIWELEGL 165
TY+SLLG+ + F QPIPL EMV+FLVDIWE EGL
Sbjct: 119 TYDSLLGSNKLFPQPIPLTEMVDFLVDIWEQEGL 152
>AT1G15350.2 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT3G15770.2); Has 148 Blast hits to 148 proteins
in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0;
Fungi - 0; Plants - 141; Viruses - 0; Other Eukaryotes -
7 (source: NCBI BLink). | chr1:5278481-5279486 REVERSE
LENGTH=154
Length = 154
Score = 110 bits (274), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 69/154 (44%), Positives = 92/154 (59%), Gaps = 8/154 (5%)
Query: 16 GCLGCFPKPISMDEASKGLITQGSA--INNYDRSEDIWSSSSFYMDHSAGYSQRSFSSIT 73
GC+GC+ + S + K + A SED WS+S+ MD+ SQ S SS
Sbjct: 3 GCVGCYREHRSTAASLKDPPSNSIARPCKKPSVSEDFWSTSTVDMDNITFPSQGSLSSS- 61
Query: 74 IPNHPSDPQSSAGNQIDHPEEFVNHGLRLWKQTRKQWVGNKKTERRMQVGE-SRISWN-A 131
N D QS+A N + P E+VN GL LW QTR++WVG K + + ++++WN A
Sbjct: 62 --NQTFDSQSAARNS-NAPPEYVNQGLLLWNQTRERWVGKDKPNNPVDHNQGAKLNWNTA 118
Query: 132 TYESLLGTTRPFRQPIPLGEMVEFLVDIWELEGL 165
TY+SLLG+ + F QPIPL EMV+FLVDIWE EGL
Sbjct: 119 TYDSLLGSNKLFPQPIPLTEMVDFLVDIWEQEGL 152
>AT1G15350.3 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast;
EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12
growth stages; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G15770.2); Has 145 Blast
hits to 145 proteins in 25 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 138; Viruses - 0;
Other Eukaryotes - 7 (source: NCBI BLink). |
chr1:5278481-5279056 REVERSE LENGTH=108
Length = 108
Score = 95.1 bits (235), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/110 (50%), Positives = 72/110 (65%), Gaps = 6/110 (5%)
Query: 58 MDHSAGYSQRSFSSITIPNHPSDPQSSAGNQIDHPEEFVNHGLRLWKQTRKQWVGNKKTE 117
MD+ SQ S SS N D QS+A N + P E+VN GL LW QTR++WVG K
Sbjct: 1 MDNITFPSQGSLSS---SNQTFDSQSAARNS-NAPPEYVNQGLLLWNQTRERWVGKDKPN 56
Query: 118 RRMQVGE-SRISWN-ATYESLLGTTRPFRQPIPLGEMVEFLVDIWELEGL 165
+ + ++++WN ATY+SLLG+ + F QPIPL EMV+FLVDIWE EGL
Sbjct: 57 NPVDHNQGAKLNWNTATYDSLLGSNKLFPQPIPLTEMVDFLVDIWEQEGL 106
>AT3G54880.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT5G25360.2); Has 137 Blast hits to 137 proteins
in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0;
Fungi - 0; Plants - 136; Viruses - 0; Other Eukaryotes -
1 (source: NCBI BLink). | chr3:20337078-20337786 REVERSE
LENGTH=112
Length = 112
Score = 87.0 bits (214), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 56/86 (65%)
Query: 80 DPQSSAGNQIDHPEEFVNHGLRLWKQTRKQWVGNKKTERRMQVGESRISWNATYESLLGT 139
D +SS ++ VNHG ++W++ R++WVG++ +R+ + ISW+ TYE LL T
Sbjct: 25 DEKSSVKTNSENTLTLVNHGAKMWQENREKWVGDQSRQRKNTAKDQIISWSTTYEDLLST 84
Query: 140 TRPFRQPIPLGEMVEFLVDIWELEGL 165
PF + IPL EMV+FLVDIW EGL
Sbjct: 85 HEPFSESIPLPEMVDFLVDIWYDEGL 110
>AT5G03440.2 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT3G54880.1); Has 35333 Blast hits to 34131
proteins in 2444 species: Archae - 798; Bacteria -
22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses
- 0; Other Eukaryotes - 9610 (source: NCBI BLink). |
chr5:857179-857898 REVERSE LENGTH=98
Length = 98
Score = 77.8 bits (190), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 48/84 (57%)
Query: 82 QSSAGNQIDHPEEFVNHGLRLWKQTRKQWVGNKKTERRMQVGESRISWNATYESLLGTTR 141
SS + E FVNH W++ RK+WVG+ E I +NATYE LL +
Sbjct: 13 NSSNDKEKSSEEIFVNHAEIAWQEMRKKWVGDPSNRTSEMPDEPVIGFNATYEDLLTSNT 72
Query: 142 PFRQPIPLGEMVEFLVDIWELEGL 165
PF +PIPL EMV+FL DIW +GL
Sbjct: 73 PFNKPIPLAEMVDFLFDIWHGDGL 96
>AT5G03440.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT3G54880.1); Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses -
0; Other Eukaryotes - 2996 (source: NCBI BLink). |
chr5:857179-857898 REVERSE LENGTH=98
Length = 98
Score = 77.8 bits (190), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 48/84 (57%)
Query: 82 QSSAGNQIDHPEEFVNHGLRLWKQTRKQWVGNKKTERRMQVGESRISWNATYESLLGTTR 141
SS + E FVNH W++ RK+WVG+ E I +NATYE LL +
Sbjct: 13 NSSNDKEKSSEEIFVNHAEIAWQEMRKKWVGDPSNRTSEMPDEPVIGFNATYEDLLTSNT 72
Query: 142 PFRQPIPLGEMVEFLVDIWELEGL 165
PF +PIPL EMV+FL DIW +GL
Sbjct: 73 PFNKPIPLAEMVDFLFDIWHGDGL 96