Miyakogusa Predicted Gene
- Lj1g3v1911640.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v1911640.2 tr|Q0E301|Q0E301_ORYSJ Os02g0201000 protein
OS=Oryza sativa subsp. japonica GN=Os02g0201000 PE=4
SV=,57.45,8e-19,DUF4050,Domain of unknown function
DUF4050,CUFF.28111.2
(159 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G25360.2 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 120 3e-28
AT5G25360.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 120 3e-28
AT4G32342.1 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 97 5e-21
AT3G15770.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 91 2e-19
AT3G15770.2 | Symbols: | unknown protein; BEST Arabidopsis thal... 91 2e-19
AT1G15350.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 82 1e-16
AT1G15350.2 | Symbols: | unknown protein; BEST Arabidopsis thal... 82 1e-16
AT1G15350.3 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 68 2e-12
AT3G54880.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 64 3e-11
AT5G03440.2 | Symbols: | unknown protein; BEST Arabidopsis thal... 59 1e-09
AT5G03440.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 59 1e-09
>AT5G25360.2 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 15 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT4G32342.1). | chr5:8799934-8802333 REVERSE
LENGTH=169
Length = 169
Score = 120 bits (302), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 63/128 (49%), Positives = 84/128 (65%), Gaps = 5/128 (3%)
Query: 19 PKPISMDEASKGLITQGSAINNYDRSEDIWSSSSFYMDHSAGYSQRSFSSITIPNHPSDP 78
P +++DE SKGL QG + SED WS+S+ MD+S SQRS SSI+ N+ S
Sbjct: 29 PLIVAVDEPSKGLRIQGRLVKKPSVSEDFWSTSTCEMDNSTLQSQRSMSSISFTNNTSTS 88
Query: 79 QSSAGNQIDHPEEFVNHGLRLWKQTRKQWVGNKKTERRMQVGESRISWNATYESLLGTTR 138
S++ +P EFVNHGL LW QTR+QW+ N ++++ +V E ISWNATYESLLG +
Sbjct: 89 ASTS-----NPTEFVNHGLNLWNQTRQQWLANGTSQKKAKVREPTISWNATYESLLGMNK 143
Query: 139 PFRQPIPL 146
F +PIPL
Sbjct: 144 RFSRPIPL 151
>AT5G25360.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT4G32342.1); Has 1807 Blast hits to 1807 proteins
in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736;
Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes
- 339 (source: NCBI BLink). | chr5:8799934-8802333
REVERSE LENGTH=169
Length = 169
Score = 120 bits (302), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 63/128 (49%), Positives = 84/128 (65%), Gaps = 5/128 (3%)
Query: 19 PKPISMDEASKGLITQGSAINNYDRSEDIWSSSSFYMDHSAGYSQRSFSSITIPNHPSDP 78
P +++DE SKGL QG + SED WS+S+ MD+S SQRS SSI+ N+ S
Sbjct: 29 PLIVAVDEPSKGLRIQGRLVKKPSVSEDFWSTSTCEMDNSTLQSQRSMSSISFTNNTSTS 88
Query: 79 QSSAGNQIDHPEEFVNHGLRLWKQTRKQWVGNKKTERRMQVGESRISWNATYESLLGTTR 138
S++ +P EFVNHGL LW QTR+QW+ N ++++ +V E ISWNATYESLLG +
Sbjct: 89 ASTS-----NPTEFVNHGLNLWNQTRQQWLANGTSQKKAKVREPTISWNATYESLLGMNK 143
Query: 139 PFRQPIPL 146
F +PIPL
Sbjct: 144 RFSRPIPL 151
>AT4G32342.1 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN:
cellular_component unknown; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G25360.2);
Has 30201 Blast hits to 17322 proteins in 780 species:
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi -
3422; Plants - 5037; Viruses - 0; Other Eukaryotes -
2996 (source: NCBI BLink). | chr4:15615184-15616200
REVERSE LENGTH=161
Length = 161
Score = 97.1 bits (240), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 61/144 (42%), Positives = 77/144 (53%), Gaps = 16/144 (11%)
Query: 8 LYGSRGCLGCFPKP----ISMDEASKGLITQGSAIN-NYDRSEDIWSSSSFYMDHSAGYS 62
L S C GC + + +DE SKGL QG + + S+D WS+S+ MDH+
Sbjct: 11 LINSINCFGCCNRERRLVVEVDEPSKGLKIQGKIVKKDSASSDDFWSTSTCDMDHNITIQ 70
Query: 63 QRSFSSITIPNHPSDPQSSAGNQIDHPEEFVNHGLRLWKQTRKQWVGNKKTERRMQVGES 122
+S N P DPQ S N EFVNHGL LW TR+QW T ++ V E
Sbjct: 71 SQS------SNPPFDPQCSTSNST----EFVNHGLILWNHTRQQW-RECLTRQQCLVPEP 119
Query: 123 RISWNATYESLLGTTRPFRQPIPL 146
ISWN+TY+SLL T + F QPIPL
Sbjct: 120 AISWNSTYDSLLSTNKLFPQPIPL 143
>AT3G15770.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT5G25360.2); Has 143 Blast hits to 143 proteins
in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0;
Fungi - 0; Plants - 136; Viruses - 0; Other Eukaryotes -
7 (source: NCBI BLink). | chr3:5340243-5341216 FORWARD
LENGTH=162
Length = 162
Score = 91.3 bits (225), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/144 (39%), Positives = 77/144 (53%), Gaps = 15/144 (10%)
Query: 14 CLGCFPKPISMDEASKGLITQGSAINNYD----------RSEDIWSSSSFYMDHSAGYSQ 63
CL CF K + L + D SED W++++ M+ +A
Sbjct: 5 CLACFDKSKAKTSVDVPLNGTKDVLVEEDWSELRKPSVVASEDFWTNTTLDMESNA---H 61
Query: 64 RSFSSITIPNHPSDPQSSAGNQIDHPEEFVNHGLRLWKQTRKQWVGNKKTERRMQVG-ES 122
S SSI+ N D Q G+ + P EFVNHGL LW QTR+QWVG+K++E R VG E
Sbjct: 62 GSVSSISTTNLTIDSQG-CGSSSNEPAEFVNHGLVLWNQTRQQWVGDKRSESRKSVGREP 120
Query: 123 RISWNATYESLLGTTRPFRQPIPL 146
++ N TYESLLG+ + F +PIPL
Sbjct: 121 ILNENVTYESLLGSNKRFPRPIPL 144
>AT3G15770.2 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT1G15350.1); Has 35333 Blast hits to 34131
proteins in 2444 species: Archae - 798; Bacteria -
22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses
- 0; Other Eukaryotes - 9610 (source: NCBI BLink). |
chr3:5340243-5341216 FORWARD LENGTH=161
Length = 161
Score = 91.3 bits (225), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/144 (39%), Positives = 77/144 (53%), Gaps = 15/144 (10%)
Query: 14 CLGCFPKPISMDEASKGLITQGSAINNYD----------RSEDIWSSSSFYMDHSAGYSQ 63
CL CF K + L + D SED W++++ M+ +A
Sbjct: 4 CLACFDKSKAKTSVDVPLNGTKDVLVEEDWSELRKPSVVASEDFWTNTTLDMESNA---H 60
Query: 64 RSFSSITIPNHPSDPQSSAGNQIDHPEEFVNHGLRLWKQTRKQWVGNKKTERRMQVG-ES 122
S SSI+ N D Q G+ + P EFVNHGL LW QTR+QWVG+K++E R VG E
Sbjct: 61 GSVSSISTTNLTIDSQG-CGSSSNEPAEFVNHGLVLWNQTRQQWVGDKRSESRKSVGREP 119
Query: 123 RISWNATYESLLGTTRPFRQPIPL 146
++ N TYESLLG+ + F +PIPL
Sbjct: 120 ILNENVTYESLLGSNKRFPRPIPL 143
>AT1G15350.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT3G15770.2); Has 148 Blast hits to 148 proteins
in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0;
Fungi - 0; Plants - 141; Viruses - 0; Other Eukaryotes -
7 (source: NCBI BLink). | chr1:5278481-5279486 REVERSE
LENGTH=154
Length = 154
Score = 82.0 bits (201), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/138 (40%), Positives = 78/138 (56%), Gaps = 8/138 (5%)
Query: 13 GCLGCFPKPISMDEASKGLITQGSA--INNYDRSEDIWSSSSFYMDHSAGYSQRSFSSIT 70
GC+GC+ + S + K + A SED WS+S+ MD+ SQ S SS
Sbjct: 3 GCVGCYREHRSTAASLKDPPSNSIARPCKKPSVSEDFWSTSTVDMDNITFPSQGSLSSS- 61
Query: 71 IPNHPSDPQSSAGNQIDHPEEFVNHGLRLWKQTRKQWVGNKKTERRMQVGE-SRISWN-A 128
N D QS+A N + P E+VN GL LW QTR++WVG K + + ++++WN A
Sbjct: 62 --NQTFDSQSAARNS-NAPPEYVNQGLLLWNQTRERWVGKDKPNNPVDHNQGAKLNWNTA 118
Query: 129 TYESLLGTTRPFRQPIPL 146
TY+SLLG+ + F QPIPL
Sbjct: 119 TYDSLLGSNKLFPQPIPL 136
>AT1G15350.2 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT3G15770.2); Has 148 Blast hits to 148 proteins
in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0;
Fungi - 0; Plants - 141; Viruses - 0; Other Eukaryotes -
7 (source: NCBI BLink). | chr1:5278481-5279486 REVERSE
LENGTH=154
Length = 154
Score = 82.0 bits (201), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/138 (40%), Positives = 78/138 (56%), Gaps = 8/138 (5%)
Query: 13 GCLGCFPKPISMDEASKGLITQGSA--INNYDRSEDIWSSSSFYMDHSAGYSQRSFSSIT 70
GC+GC+ + S + K + A SED WS+S+ MD+ SQ S SS
Sbjct: 3 GCVGCYREHRSTAASLKDPPSNSIARPCKKPSVSEDFWSTSTVDMDNITFPSQGSLSSS- 61
Query: 71 IPNHPSDPQSSAGNQIDHPEEFVNHGLRLWKQTRKQWVGNKKTERRMQVGE-SRISWN-A 128
N D QS+A N + P E+VN GL LW QTR++WVG K + + ++++WN A
Sbjct: 62 --NQTFDSQSAARNS-NAPPEYVNQGLLLWNQTRERWVGKDKPNNPVDHNQGAKLNWNTA 118
Query: 129 TYESLLGTTRPFRQPIPL 146
TY+SLLG+ + F QPIPL
Sbjct: 119 TYDSLLGSNKLFPQPIPL 136
>AT1G15350.3 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast;
EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12
growth stages; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G15770.2); Has 145 Blast
hits to 145 proteins in 25 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 138; Viruses - 0;
Other Eukaryotes - 7 (source: NCBI BLink). |
chr1:5278481-5279056 REVERSE LENGTH=108
Length = 108
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/94 (45%), Positives = 58/94 (61%), Gaps = 6/94 (6%)
Query: 55 MDHSAGYSQRSFSSITIPNHPSDPQSSAGNQIDHPEEFVNHGLRLWKQTRKQWVGNKKTE 114
MD+ SQ S SS N D QS+A N + P E+VN GL LW QTR++WVG K
Sbjct: 1 MDNITFPSQGSLSS---SNQTFDSQSAARNS-NAPPEYVNQGLLLWNQTRERWVGKDKPN 56
Query: 115 RRMQVGE-SRISWN-ATYESLLGTTRPFRQPIPL 146
+ + ++++WN ATY+SLLG+ + F QPIPL
Sbjct: 57 NPVDHNQGAKLNWNTATYDSLLGSNKLFPQPIPL 90
>AT3G54880.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT5G25360.2); Has 137 Blast hits to 137 proteins
in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0;
Fungi - 0; Plants - 136; Viruses - 0; Other Eukaryotes -
1 (source: NCBI BLink). | chr3:20337078-20337786 REVERSE
LENGTH=112
Length = 112
Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 43/70 (61%)
Query: 77 DPQSSAGNQIDHPEEFVNHGLRLWKQTRKQWVGNKKTERRMQVGESRISWNATYESLLGT 136
D +SS ++ VNHG ++W++ R++WVG++ +R+ + ISW+ TYE LL T
Sbjct: 25 DEKSSVKTNSENTLTLVNHGAKMWQENREKWVGDQSRQRKNTAKDQIISWSTTYEDLLST 84
Query: 137 TRPFRQPIPL 146
PF + IPL
Sbjct: 85 HEPFSESIPL 94
>AT5G03440.2 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT3G54880.1); Has 35333 Blast hits to 34131
proteins in 2444 species: Archae - 798; Bacteria -
22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses
- 0; Other Eukaryotes - 9610 (source: NCBI BLink). |
chr5:857179-857898 REVERSE LENGTH=98
Length = 98
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 90 EEFVNHGLRLWKQTRKQWVGNKKTERRMQVGESRISWNATYESLLGTTRPFRQPIPLGVS 149
E FVNH W++ RK+WVG+ E I +NATYE LL + PF +PIPL +
Sbjct: 24 EIFVNHAEIAWQEMRKKWVGDPSNRTSEMPDEPVIGFNATYEDLLTSNTPFNKPIPL--A 81
Query: 150 SCILTCFFIW 159
+ F IW
Sbjct: 82 EMVDFLFDIW 91
>AT5G03440.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT3G54880.1); Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses -
0; Other Eukaryotes - 2996 (source: NCBI BLink). |
chr5:857179-857898 REVERSE LENGTH=98
Length = 98
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 90 EEFVNHGLRLWKQTRKQWVGNKKTERRMQVGESRISWNATYESLLGTTRPFRQPIPLGVS 149
E FVNH W++ RK+WVG+ E I +NATYE LL + PF +PIPL +
Sbjct: 24 EIFVNHAEIAWQEMRKKWVGDPSNRTSEMPDEPVIGFNATYEDLLTSNTPFNKPIPL--A 81
Query: 150 SCILTCFFIW 159
+ F IW
Sbjct: 82 EMVDFLFDIW 91