Miyakogusa Predicted Gene

Lj1g3v1900600.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1900600.1 Non Chatacterized Hit- tr|I1M0P2|I1M0P2_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.37461 PE,81.3,0,Ribosome
recycling factor, RRF,Ribosome recycling factor domain; no
description,NULL; RRF,Ribosome r,CUFF.28102.1
         (261 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G01800.1 | Symbols:  | Ribosome recycling factor | chr3:28602...   323   1e-88
AT3G63190.1 | Symbols: RRF, HFP108, cpRRF, AtcpRRF | ribosome re...   114   9e-26

>AT3G01800.1 | Symbols:  | Ribosome recycling factor |
           chr3:286020-287543 FORWARD LENGTH=267
          Length = 267

 Score =  323 bits (827), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 163/268 (60%), Positives = 209/268 (77%), Gaps = 11/268 (4%)

Query: 1   MSGYIRRAISCQNLLQ-LRNSA-------FHVCDVPGAIQIRALESNRVSTLPAAANFIV 52
           M+ ++RRA+S +N +  LR S+       F     P  + +   +     ++P   +F+ 
Sbjct: 2   MAMFVRRALSSRNAIGFLRRSSVVVQSRDFSFISSPNLMMMGGRDLQFDLSMP---DFLR 58

Query: 53  ESRRAFAKGRKSKDDAGMSTIEVPLVLGPTIKANAVSQMEAAISALSTELSKLRTGRASP 112
           +SRR FAKG+KSKDD+G   ++    +GPT+KA A SQMEAAI ALS +L+KLRTGRA+P
Sbjct: 59  DSRRGFAKGKKSKDDSGTGMVDAAPDIGPTVKAAASSQMEAAIDALSRDLTKLRTGRAAP 118

Query: 113 GMLDHIIVETGGVKIPLVRIALVSVIDPKTLSVNPYDPQTLKQLENAIVSSPLGLNPKAD 172
           GMLDHI+VETGGVK+PL  +ALVSV+DPKTLSVNPYDP T+K+LE AIV+SPLGLNPK D
Sbjct: 119 GMLDHIVVETGGVKMPLNHLALVSVLDPKTLSVNPYDPDTVKELEKAIVASPLGLNPKLD 178

Query: 173 GERLIAAIPPLTKEHMQAMNKLVTKSCEDARQSIRRARQKAMDAIKKLNSSLPKDDIKRL 232
           G+RL+A+IP LTKEH+QAM K+VTKS E  +QSIRRARQKA+D IKK  SSLPKD++KRL
Sbjct: 179 GQRLVASIPALTKEHIQAMCKIVTKSSEVVKQSIRRARQKALDTIKKAGSSLPKDEVKRL 238

Query: 233 EKEVDDLTKKFIKTAEDTCKAKEKEISQ 260
           EKEVD+LTKKF+K+AED CK+KEKEI++
Sbjct: 239 EKEVDELTKKFVKSAEDMCKSKEKEITE 266


>AT3G63190.1 | Symbols: RRF, HFP108, cpRRF, AtcpRRF | ribosome
           recycling factor, chloroplast precursor |
           chr3:23342861-23344640 REVERSE LENGTH=275
          Length = 275

 Score =  114 bits (284), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 64/178 (35%), Positives = 104/178 (58%), Gaps = 2/178 (1%)

Query: 83  IKANAVSQMEAAISALSTELSKLRTGRASPGMLDHIIVETGGVKIPLVRIALVSVIDPKT 142
           I+ +  S+ME  I  L T  + +RTGR++  MLD I VE  G  + L  IA +S  D  +
Sbjct: 95  IETDVKSKMEKTIETLRTSFNSIRTGRSNAAMLDKIEVEYYGSPVSLKSIAQISTPDGSS 154

Query: 143 LSVNPYDPQTLKQLENAIVSSPLGLNPKADGERLIAAIPPLTKEHMQAMNKLVTKSCEDA 202
           L + PYD  +LK +E AIV+S LG+ P  DG+ +  ++PPLT +  + ++K+V K  E+ 
Sbjct: 155 LLLQPYDKSSLKAIEKAIVNSDLGVTPNNDGDVIRLSLPPLTSDRRKELSKVVAKQSEEG 214

Query: 203 RQSIRRARQKAMDAIKKLNSS--LPKDDIKRLEKEVDDLTKKFIKTAEDTCKAKEKEI 258
           + ++R  R+ A+ +  KL     L +D++K L  ++  L   ++K  E+  K KEKE+
Sbjct: 215 KVALRNIRRDALKSYDKLEKEKKLSEDNVKDLSSDLQKLIDVYMKKIEELYKQKEKEL 272