Miyakogusa Predicted Gene

Lj1g3v1852290.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1852290.2 Non Chatacterized Hit- tr|E1ZCG5|E1ZCG5_CHLVA
Putative uncharacterized protein OS=Chlorella
variabil,39.23,0.00000000001,NEUROCHONDRIN-RELATED,NULL;
NEUROCHONDRIN,Neurochondrin; Neurochondrin,NULL; seg,NULL,CUFF.28084.2
         (163 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G32050.1 | Symbols:  | neurochondrin family protein | chr4:15...   194   3e-50

>AT4G32050.1 | Symbols:  | neurochondrin family protein |
           chr4:15496620-15500717 FORWARD LENGTH=618
          Length = 618

 Score =  194 bits (492), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 97/161 (60%), Positives = 120/161 (74%), Gaps = 4/161 (2%)

Query: 3   PNQEQSPNLEECLKLLKGEQDEQRLAGLLLVTKFCKADDRSSLSRVYDAVGPVFLDRLLX 62
           P +E+SP+L++CLKLLKGE+DEQRLAGLLLVTKFCK DD  SL++VY+AVG  FLDRL  
Sbjct: 5   PQEERSPSLDDCLKLLKGERDEQRLAGLLLVTKFCKNDDIVSLNKVYEAVGTHFLDRLFR 64

Query: 63  XXXXXXXXXXXXXNNRDAYLSVAVTVLSTFCRVPEIASSEDMVVKIPLILEVMSTQSGSS 122
                        +NRD YL +++TVL+ FCRVPEIASSE+MV +IPLILEVMS    ++
Sbjct: 65  TGSGSGDGV----DNRDVYLQISITVLAAFCRVPEIASSEEMVSRIPLILEVMSKGITTN 120

Query: 123 ALEECYEFLYLVSTASENGLMRFYESKGIKILASQMSSLQD 163
            LE+CYE LYLVSTA E GLM    S G++++A QMS L D
Sbjct: 121 MLEDCYELLYLVSTACEAGLMTLINSGGLRVIAPQMSELPD 161