Miyakogusa Predicted Gene

Lj1g3v1852280.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1852280.2 tr|A9TFH4|A9TFH4_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_92084
,26.62,0.0000000000003,seg,NULL; Neurochondrin,NULL; coiled-coil,NULL;
NEUROCHONDRIN-RELATED,NULL; NEUROCHONDRIN,Neurochond,CUFF.28079.2
         (281 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G32050.1 | Symbols:  | neurochondrin family protein | chr4:15...   302   1e-82

>AT4G32050.1 | Symbols:  | neurochondrin family protein |
           chr4:15496620-15500717 FORWARD LENGTH=618
          Length = 618

 Score =  302 bits (774), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 161/279 (57%), Positives = 198/279 (70%), Gaps = 4/279 (1%)

Query: 3   GEDWLIRQVSTNDTQDPTPADMCPLLVLEQSRVEIAVLLNELAYLKYEAPQDTSSTAEAY 62
           GE WL+  V   +     PAD C LLVLE S VEI+VLLN+LAY KYEAP+D +STAE  
Sbjct: 279 GEKWLLGGVKLPNVD--IPADRCLLLVLESSHVEISVLLNDLAYKKYEAPKD-NSTAEDI 335

Query: 63  SLKRQNVVVAYSLVEKIIKLISNVGENDGNLLDESTFTQLIQQLNETVAVILEYLEDAKE 122
            LK++ + + +SLVEKIIK IS+ GEN+G L DE+ F ++I+ LNETV  + EYL DAKE
Sbjct: 336 LLKQRYLPIVFSLVEKIIKYISSAGENEGTLSDEAVFQKVIKILNETVGAVFEYLRDAKE 395

Query: 123 RGQKKGDDLLASVRIIGSYLAEAPLACKEKVQDLLGYMLSVEGEDEQRPFYSVCFLLPML 182
            G KKG DLLASVR+IGSYLAE P+ACKE+VQDLL YMLSV+GEDE  PF S CFLLPML
Sbjct: 396 HGIKKGTDLLASVRVIGSYLAETPVACKEQVQDLLDYMLSVKGEDESSPFLSTCFLLPML 455

Query: 183 CQITMKVEGCKALASCGELKAVLDCLSNLIGSNGYTVEDSSCIFLACDIIMNLLMKKDKV 242
           CQITM  EGCK LA      AV++CL  LI   G +V++   IFLACD IMN+L+K++++
Sbjct: 456 CQITMNAEGCKLLAYSRGDVAVVECLIKLIERCGESVDEDRSIFLACDTIMNILLKREEI 515

Query: 243 QLTLDGSVFVDLLKALAYWSENXXXXXXXXXXASICALI 281
               + S F  LLKALAYW++           ASIC+LI
Sbjct: 516 S-PPEISTFASLLKALAYWADGSNDHSVVMMAASICSLI 553