Miyakogusa Predicted Gene

Lj1g3v1852280.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1852280.1 tr|A9TFH4|A9TFH4_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_92084
,26.62,0.0000000000004,seg,NULL; Neurochondrin,NULL; coiled-coil,NULL;
NEUROCHONDRIN-RELATED,NULL; NEUROCHONDRIN,Neurochond,CUFF.28079.1
         (285 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G32050.1 | Symbols:  | neurochondrin family protein | chr4:15...   300   7e-82

>AT4G32050.1 | Symbols:  | neurochondrin family protein |
           chr4:15496620-15500717 FORWARD LENGTH=618
          Length = 618

 Score =  300 bits (768), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 166/306 (54%), Positives = 204/306 (66%), Gaps = 25/306 (8%)

Query: 1   MAILQNRV---------------------DWLIRQVSTNDTQDPTPADMCPLLVLEQSRV 39
           +AILQNRV                      WL+  V   +     PAD C LLVLE S V
Sbjct: 252 VAILQNRVAPSEKLHALILAENMMSILGEKWLLGGVKLPNVD--IPADRCLLLVLESSHV 309

Query: 40  EIAVLLNELAYLKYEAPQDTSSTAEAYSLKRQNVVVAYSLVEKIIKLISNVGENDGNLLD 99
           EI+VLLN+LAY KYEAP+D +STAE   LK++ + + +SLVEKIIK IS+ GEN+G L D
Sbjct: 310 EISVLLNDLAYKKYEAPKD-NSTAEDILLKQRYLPIVFSLVEKIIKYISSAGENEGTLSD 368

Query: 100 ESTFTQLIQQLNETVAVILEYLEDAKERGQKKGDDLLASVRIIGSYLAEAPLACKEKVQD 159
           E+ F ++I+ LNETV  + EYL DAKE G KKG DLLASVR+IGSYLAE P+ACKE+VQD
Sbjct: 369 EAVFQKVIKILNETVGAVFEYLRDAKEHGIKKGTDLLASVRVIGSYLAETPVACKEQVQD 428

Query: 160 LLGYMLSVEGEDEQRPFYSVCFLLPMLCQITMKVEGCKALASCGELKAVLDCLSNLIGSN 219
           LL YMLSV+GEDE  PF S CFLLPMLCQITM  EGCK LA      AV++CL  LI   
Sbjct: 429 LLDYMLSVKGEDESSPFLSTCFLLPMLCQITMNAEGCKLLAYSRGDVAVVECLIKLIERC 488

Query: 220 GYTVEDSSCIFLACDIIMNLLMKKDKVQLTLDGSVFVDLLKALAYWSENXXXXXXXXXXA 279
           G +V++   IFLACD IMN+L+K++++    + S F  LLKALAYW++           A
Sbjct: 489 GESVDEDRSIFLACDTIMNILLKREEIS-PPEISTFASLLKALAYWADGSNDHSVVMMAA 547

Query: 280 SICALI 285
           SIC+LI
Sbjct: 548 SICSLI 553