Miyakogusa Predicted Gene

Lj1g3v1819850.3
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1819850.3 Non Chatacterized Hit- tr|C6T5R2|C6T5R2_SOYBN
Putative uncharacterized protein OS=Glycine max PE=2
S,68.69,4e-16,seg,NULL,CUFF.29098.3
         (226 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G25110.1 | Symbols: SDF2, ATSDL, AtSDF2 | stromal cell-derive...   329   7e-91

>AT2G25110.1 | Symbols: SDF2, ATSDL, AtSDF2 | stromal cell-derived
           factor 2-like protein precursor | chr2:10684428-10685838
           FORWARD LENGTH=218
          Length = 218

 Score =  329 bits (844), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 153/186 (82%), Positives = 169/186 (90%), Gaps = 2/186 (1%)

Query: 40  EGVEVQVTYGSVLKLMHEKTKFRLHSHDVPYGSGSGQQSVTGFPDVDDANSYWIVRPEPG 99
           EGVE+  TYGS +KLMHEKTKFRLHSHDVPYGSGSGQQSVTGFP V D+NSYWIV+P PG
Sbjct: 33  EGVEI--TYGSAIKLMHEKTKFRLHSHDVPYGSGSGQQSVTGFPGVVDSNSYWIVKPVPG 90

Query: 100 TGAKQGDAIKSGTIIRLQHMRTRKWLHSHLHASPISGNLEVSCFGGESESDTGDYWKVFI 159
           T  KQGDA+KSG  IRLQHM+TRKWLHSHLHASPISGNLEVSCFG ++ SDTGD+WK+ I
Sbjct: 91  TTEKQGDAVKSGATIRLQHMKTRKWLHSHLHASPISGNLEVSCFGDDTNSDTGDHWKLII 150

Query: 160 EGSGKTWKQDQKIRLQHIDTGGYLHSHDKKYSRIAGGQQEVCAVREKRADNVWLAAEGVY 219
           EGSGKTWKQDQ++RLQHIDT GYLHSHDKKY RIAGGQQEVC +REK+ADN+WLAAEGVY
Sbjct: 151 EGSGKTWKQDQRVRLQHIDTSGYLHSHDKKYQRIAGGQQEVCGIREKKADNIWLAAEGVY 210

Query: 220 LPVTES 225
           LP+ ES
Sbjct: 211 LPLNES 216