Miyakogusa Predicted Gene
- Lj1g3v1819810.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v1819810.2 Non Chatacterized Hit- tr|C5Y5X2|C5Y5X2_SORBI
Putative uncharacterized protein Sb05g023880
OS=Sorghu,45.76,3e-18,seg,NULL; Tudor/PWWP/MBT,NULL; Tudor
domain,Tudor domain; ANDROGEN INDUCED INHIBITOR OF
PROLIFERATIO,CUFF.29087.2
(510 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G31880.2 | Symbols: | LOCATED IN: cytosol; EXPRESSED IN: 24 ... 109 4e-24
AT4G31880.1 | Symbols: | LOCATED IN: cytosol, chloroplast; EXPR... 109 4e-24
AT5G10950.1 | Symbols: | Tudor/PWWP/MBT superfamily protein | c... 108 8e-24
AT1G15940.1 | Symbols: | Tudor/PWWP/MBT superfamily protein | c... 96 6e-20
AT1G80810.2 | Symbols: | Tudor/PWWP/MBT superfamily protein | c... 91 1e-18
AT1G80810.1 | Symbols: | Tudor/PWWP/MBT superfamily protein | c... 91 2e-18
AT5G47690.1 | Symbols: | binding | chr5:19317899-19327014 FORWA... 85 1e-16
AT5G47690.3 | Symbols: | binding | chr5:19317899-19327014 FORWA... 85 1e-16
AT5G47690.2 | Symbols: | binding | chr5:19317899-19327014 FORWA... 85 1e-16
AT4G32970.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 73 4e-13
AT4G02070.2 | Symbols: MSH6 | MUTS homolog 6 | chr4:906079-91293... 60 5e-09
AT4G02070.1 | Symbols: MSH6, MSH6-1, ATMSH6 | MUTS homolog 6 | c... 60 5e-09
AT1G77600.2 | Symbols: | ARM repeat superfamily protein | chr1:... 57 3e-08
AT1G77600.1 | Symbols: | ARM repeat superfamily protein | chr1:... 57 3e-08
AT1G77600.3 | Symbols: | ARM repeat superfamily protein | chr1:... 57 3e-08
AT4G32620.2 | Symbols: | Enhancer of polycomb-like transcriptio... 56 6e-08
AT4G32620.1 | Symbols: | Enhancer of polycomb-like transcriptio... 56 6e-08
AT1G05830.2 | Symbols: ATX2 | trithorax-like protein 2 | chr1:17... 50 3e-06
AT1G05830.1 | Symbols: ATX2, SDG30 | trithorax-like protein 2 | ... 50 3e-06
>AT4G31880.2 | Symbols: | LOCATED IN: cytosol; EXPRESSED IN: 24
plant structures; EXPRESSED DURING: 14 growth stages;
BEST Arabidopsis thaliana protein match is:
Tudor/PWWP/MBT superfamily protein (TAIR:AT1G15940.1). |
chr4:15419435-15423939 REVERSE LENGTH=872
Length = 872
Score = 109 bits (273), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 66/152 (43%), Positives = 92/152 (60%), Gaps = 16/152 (10%)
Query: 111 GRGKANSEAAVAKSSAIDVDKEMTVYSPRSGTKSTKS-----ENTEEIPLTSAKRKRTPG 165
GRGKA E ++ SS D E S SG ++KS + EE P ++ KRKR+ G
Sbjct: 544 GRGKAIDEESLHTSSG---DNEKPAVS--SGKLASKSKKEAKQTVEESPNSNTKRKRSLG 598
Query: 166 KEKESDTKKYGENLVGLRVKVWWPEDREFYTGVVNSFDSARKKHKVLYDDGDEETLNLRE 225
+ K S GE+LVG R+KVWWP D+ +Y GVV S+D+A+KKH V+YDDGD+E L L+
Sbjct: 599 QGKAS-----GESLVGSRIKVWWPMDQAYYKGVVESYDAAKKKHLVIYDDGDQEILYLKN 653
Query: 226 EKWGVIKKADSDADGEEGSDQAGLDGSAEMPP 257
+KW + +++ D EE +DQ G + A P
Sbjct: 654 QKWSPLDESELSQD-EEAADQTGQEEDASTVP 684
>AT4G31880.1 | Symbols: | LOCATED IN: cytosol, chloroplast;
EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14
growth stages; BEST Arabidopsis thaliana protein match
is: Tudor/PWWP/MBT superfamily protein
(TAIR:AT1G15940.1); Has 137162 Blast hits to 70781
proteins in 2973 species: Archae - 289; Bacteria -
24182; Metazoa - 56725; Fungi - 20130; Plants - 6559;
Viruses - 758; Other Eukaryotes - 28519 (source: NCBI
BLink). | chr4:15419435-15423939 REVERSE LENGTH=873
Length = 873
Score = 109 bits (273), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 66/152 (43%), Positives = 92/152 (60%), Gaps = 16/152 (10%)
Query: 111 GRGKANSEAAVAKSSAIDVDKEMTVYSPRSGTKSTKS-----ENTEEIPLTSAKRKRTPG 165
GRGKA E ++ SS D E S SG ++KS + EE P ++ KRKR+ G
Sbjct: 545 GRGKAIDEESLHTSSG---DNEKPAVS--SGKLASKSKKEAKQTVEESPNSNTKRKRSLG 599
Query: 166 KEKESDTKKYGENLVGLRVKVWWPEDREFYTGVVNSFDSARKKHKVLYDDGDEETLNLRE 225
+ K S GE+LVG R+KVWWP D+ +Y GVV S+D+A+KKH V+YDDGD+E L L+
Sbjct: 600 QGKAS-----GESLVGSRIKVWWPMDQAYYKGVVESYDAAKKKHLVIYDDGDQEILYLKN 654
Query: 226 EKWGVIKKADSDADGEEGSDQAGLDGSAEMPP 257
+KW + +++ D EE +DQ G + A P
Sbjct: 655 QKWSPLDESELSQD-EEAADQTGQEEDASTVP 685
>AT5G10950.1 | Symbols: | Tudor/PWWP/MBT superfamily protein |
chr5:3459557-3461632 REVERSE LENGTH=395
Length = 395
Score = 108 bits (271), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 45/85 (52%), Positives = 70/85 (82%)
Query: 162 RTPGKEKESDTKKYGENLVGLRVKVWWPEDREFYTGVVNSFDSARKKHKVLYDDGDEETL 221
R+ GK+K SD +KYGE LVG R++VWWP D +FY GVV+S+ S++KKH+V Y+DGD+ETL
Sbjct: 20 RSSGKDKVSDARKYGEALVGSRIRVWWPMDSKFYKGVVDSYVSSKKKHRVFYEDGDKETL 79
Query: 222 NLREEKWGVIKKADSDADGEEGSDQ 246
+L++E+W +I++ D++++ +E S Q
Sbjct: 80 DLKKERWELIEEDDAESESDEISLQ 104
>AT1G15940.1 | Symbols: | Tudor/PWWP/MBT superfamily protein |
chr1:5473672-5478050 FORWARD LENGTH=990
Length = 990
Score = 95.9 bits (237), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 44/93 (47%), Positives = 63/93 (67%), Gaps = 2/93 (2%)
Query: 139 RSGTKSTKSENTEEIPLTSAKRKRTPGKEKESDTKKYGENLVGLRVKVWWPEDREFYTGV 198
R+ T +TK +E+ P + K KR G+E ES+T + GE LVG RV VWWP D++FY GV
Sbjct: 533 RATTPATK--KSEQAPKSHPKMKRIAGEEVESNTNELGEELVGKRVNVWWPLDKKFYEGV 590
Query: 199 VNSFDSARKKHKVLYDDGDEETLNLREEKWGVI 231
+ S+ +K H+V Y DGD E LNL++E++ +I
Sbjct: 591 IKSYCRVKKMHQVTYSDGDVEELNLKKERFKII 623
>AT1G80810.2 | Symbols: | Tudor/PWWP/MBT superfamily protein |
chr1:30365575-30368898 FORWARD LENGTH=774
Length = 774
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 42/96 (43%), Positives = 65/96 (67%), Gaps = 4/96 (4%)
Query: 147 SENTEEIPLTSAKRKRTPGKEKESDTKKYGENLVGLRVKVWWPEDREFYTGVVNSFDSAR 206
+E+ EE P + R+RT KE + +GE+LVG RV +WWP D+ FY GV++S+ + +
Sbjct: 476 NESEEETPKSHPTRRRTVRKEV---SDGFGEDLVGKRVNIWWPLDKTFYEGVIDSYCTRK 532
Query: 207 KKHKVLYDDGDEETLNLREEKWGVIKKADSDADGEE 242
K H+V+Y DGD E LNL EE+W +++ D+ AD ++
Sbjct: 533 KMHRVIYSDGDSEELNLTEERWELLED-DTSADEQD 567
>AT1G80810.1 | Symbols: | Tudor/PWWP/MBT superfamily protein |
chr1:30365575-30368898 FORWARD LENGTH=773
Length = 773
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/99 (43%), Positives = 66/99 (66%), Gaps = 4/99 (4%)
Query: 147 SENTEEIPLTSAKRKRTPGKEKESDTKKYGENLVGLRVKVWWPEDREFYTGVVNSFDSAR 206
+E+ EE P + R+RT KE + +GE+LVG RV +WWP D+ FY GV++S+ + +
Sbjct: 476 NESEEETPKSHPTRRRTVRKEV---SDGFGEDLVGKRVNIWWPLDKTFYEGVIDSYCTRK 532
Query: 207 KKHKVLYDDGDEETLNLREEKWGVIKKADSDADGEEGSD 245
K H+V+Y DGD E LNL EE+W +++ D+ AD ++ D
Sbjct: 533 KMHRVIYSDGDSEELNLTEERWELLED-DTSADEDKEID 570
>AT5G47690.1 | Symbols: | binding | chr5:19317899-19327014 FORWARD
LENGTH=1605
Length = 1605
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 51/75 (68%), Gaps = 2/75 (2%)
Query: 159 KRKRTPGKEKES--DTKKYGENLVGLRVKVWWPEDREFYTGVVNSFDSARKKHKVLYDDG 216
KRK G K S + K + L+G R++VWWP D+ FY G V S+DS +++H +LY+DG
Sbjct: 1345 KRKNVSGLAKCSTKENKLVNDELIGCRIEVWWPMDKRFYEGTVKSYDSTKQRHVILYEDG 1404
Query: 217 DEETLNLREEKWGVI 231
D E LNL++E+W +I
Sbjct: 1405 DVEVLNLKKEQWELI 1419
>AT5G47690.3 | Symbols: | binding | chr5:19317899-19327014 FORWARD
LENGTH=1607
Length = 1607
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 51/75 (68%), Gaps = 2/75 (2%)
Query: 159 KRKRTPGKEKES--DTKKYGENLVGLRVKVWWPEDREFYTGVVNSFDSARKKHKVLYDDG 216
KRK G K S + K + L+G R++VWWP D+ FY G V S+DS +++H +LY+DG
Sbjct: 1346 KRKNVSGLAKCSTKENKLVNDELIGCRIEVWWPMDKRFYEGTVKSYDSTKQRHVILYEDG 1405
Query: 217 DEETLNLREEKWGVI 231
D E LNL++E+W +I
Sbjct: 1406 DVEVLNLKKEQWELI 1420
>AT5G47690.2 | Symbols: | binding | chr5:19317899-19327014 FORWARD
LENGTH=1606
Length = 1606
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 51/75 (68%), Gaps = 2/75 (2%)
Query: 159 KRKRTPGKEKES--DTKKYGENLVGLRVKVWWPEDREFYTGVVNSFDSARKKHKVLYDDG 216
KRK G K S + K + L+G R++VWWP D+ FY G V S+DS +++H +LY+DG
Sbjct: 1346 KRKNVSGLAKCSTKENKLVNDELIGCRIEVWWPMDKRFYEGTVKSYDSTKQRHVILYEDG 1405
Query: 217 DEETLNLREEKWGVI 231
D E LNL++E+W +I
Sbjct: 1406 DVEVLNLKKEQWELI 1420
>AT4G32970.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT4G32960.1); Has 552 Blast hits to 489 proteins
in 85 species: Archae - 4; Bacteria - 14; Metazoa - 187;
Fungi - 12; Plants - 225; Viruses - 0; Other Eukaryotes
- 110 (source: NCBI BLink). | chr4:15910671-15914300
REVERSE LENGTH=638
Length = 638
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 41/91 (45%), Positives = 55/91 (60%), Gaps = 10/91 (10%)
Query: 122 AKSSAIDVDKEMTVYSPRSGTKSTKS--ENTEEIPLTSAKRKRTPGKEKESDTKKYGENL 179
AK A+ DK S + STK + E+ P T+ KR + GKEK SD KKY E +
Sbjct: 234 AKKPAVSCDK--------SASDSTKGAKQPLEKKPKTNTKRIHSLGKEKTSDFKKYDEKI 285
Query: 180 VGLRVKVWWPEDREFYTGVVNSFDSARKKHK 210
VG RVK+WWP DR +Y VV S+ SA+++H+
Sbjct: 286 VGSRVKIWWPLDRAYYEAVVISYCSAKERHR 316
>AT4G02070.2 | Symbols: MSH6 | MUTS homolog 6 | chr4:906079-912930
FORWARD LENGTH=1321
Length = 1321
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 43/64 (67%), Gaps = 2/64 (3%)
Query: 169 ESDTKKYGENLVGLRVKVWWPEDREFYTGVVNSFDSARKKHKVLYDDGDEETLNLREEK- 227
+S YG+ +VG +V+V+WP D+++Y G V +D KH V Y+DG+EE+L+L +EK
Sbjct: 114 QSVVITYGDEVVGKQVRVYWPLDKKWYDGSVTFYDKGEGKHVVEYEDGEEESLDLGKEKT 173
Query: 228 -WGV 230
W V
Sbjct: 174 EWVV 177
>AT4G02070.1 | Symbols: MSH6, MSH6-1, ATMSH6 | MUTS homolog 6 |
chr4:906079-912930 FORWARD LENGTH=1324
Length = 1324
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 43/64 (67%), Gaps = 2/64 (3%)
Query: 169 ESDTKKYGENLVGLRVKVWWPEDREFYTGVVNSFDSARKKHKVLYDDGDEETLNLREEK- 227
+S YG+ +VG +V+V+WP D+++Y G V +D KH V Y+DG+EE+L+L +EK
Sbjct: 114 QSVVITYGDEVVGKQVRVYWPLDKKWYDGSVTFYDKGEGKHVVEYEDGEEESLDLGKEKT 173
Query: 228 -WGV 230
W V
Sbjct: 174 EWVV 177
>AT1G77600.2 | Symbols: | ARM repeat superfamily protein |
chr1:29152890-29162156 REVERSE LENGTH=1410
Length = 1410
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%)
Query: 171 DTKKYGENLVGLRVKVWWPEDREFYTGVVNSFDSARKKHKVLYDDGDEETLNLREEKW 228
D +GE ++G R+K+ P D FY G V F+S HK+++D+GD E + L E W
Sbjct: 1249 DISNHGEAIIGQRIKLLSPTDGCFYPGTVEKFNSKSNSHKIIFDNGDVELVCLDSESW 1306
>AT1G77600.1 | Symbols: | ARM repeat superfamily protein |
chr1:29152890-29162156 REVERSE LENGTH=1367
Length = 1367
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%)
Query: 171 DTKKYGENLVGLRVKVWWPEDREFYTGVVNSFDSARKKHKVLYDDGDEETLNLREEKW 228
D +GE ++G R+K+ P D FY G V F+S HK+++D+GD E + L E W
Sbjct: 1213 DISNHGEAIIGQRIKLLSPTDGCFYPGTVEKFNSKSNSHKIIFDNGDVELVCLDSESW 1270
>AT1G77600.3 | Symbols: | ARM repeat superfamily protein |
chr1:29152890-29162156 REVERSE LENGTH=1424
Length = 1424
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%)
Query: 171 DTKKYGENLVGLRVKVWWPEDREFYTGVVNSFDSARKKHKVLYDDGDEETLNLREEKW 228
D +GE ++G R+K+ P D FY G V F+S HK+++D+GD E + L E W
Sbjct: 1263 DISNHGEAIIGQRIKLLSPTDGCFYPGTVEKFNSKSNSHKIIFDNGDVELVCLDSESW 1320
>AT4G32620.2 | Symbols: | Enhancer of polycomb-like transcription
factor protein | chr4:15731968-15737222 FORWARD
LENGTH=1540
Length = 1540
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 35/53 (66%)
Query: 179 LVGLRVKVWWPEDREFYTGVVNSFDSARKKHKVLYDDGDEETLNLREEKWGVI 231
L+ ++KV+WP D +Y G V+ FD + H V YDD DEE +NL+ E++ ++
Sbjct: 355 LLNKKIKVFWPLDERWYHGFVDGFDGDKNLHHVKYDDRDEEWINLQGERFKIL 407
>AT4G32620.1 | Symbols: | Enhancer of polycomb-like transcription
factor protein | chr4:15731968-15737222 FORWARD
LENGTH=1539
Length = 1539
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 35/53 (66%)
Query: 179 LVGLRVKVWWPEDREFYTGVVNSFDSARKKHKVLYDDGDEETLNLREEKWGVI 231
L+ ++KV+WP D +Y G V+ FD + H V YDD DEE +NL+ E++ ++
Sbjct: 355 LLNKKIKVFWPLDERWYHGFVDGFDGDKNLHHVKYDDRDEEWINLQGERFKIL 407
>AT1G05830.2 | Symbols: ATX2 | trithorax-like protein 2 |
chr1:1754452-1761225 FORWARD LENGTH=1083
Length = 1083
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 41/79 (51%), Gaps = 8/79 (10%)
Query: 178 NLVGLRVKVWWPEDREFYTGVVNSFDSARKKHKVLYDDGDEETLNLREEKWGVIKKADSD 237
+ +GL+ KV+WP D +Y G + ++ K H V Y DGD E L LR EK IK S
Sbjct: 219 HFIGLQCKVFWPLDAVWYPGSIVGYNVETKHHIVKYGDGDGEELALRREK---IKFLISR 275
Query: 238 ADGE-----EGSDQAGLDG 251
D E G++ +DG
Sbjct: 276 DDMELLNMKFGTNDVVVDG 294
>AT1G05830.1 | Symbols: ATX2, SDG30 | trithorax-like protein 2 |
chr1:1754452-1761225 FORWARD LENGTH=1083
Length = 1083
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 41/79 (51%), Gaps = 8/79 (10%)
Query: 178 NLVGLRVKVWWPEDREFYTGVVNSFDSARKKHKVLYDDGDEETLNLREEKWGVIKKADSD 237
+ +GL+ KV+WP D +Y G + ++ K H V Y DGD E L LR EK IK S
Sbjct: 219 HFIGLQCKVFWPLDAVWYPGSIVGYNVETKHHIVKYGDGDGEELALRREK---IKFLISR 275
Query: 238 ADGE-----EGSDQAGLDG 251
D E G++ +DG
Sbjct: 276 DDMELLNMKFGTNDVVVDG 294