Miyakogusa Predicted Gene

Lj1g3v1812240.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1812240.1 tr|C1DZE8|C1DZE8_MICSR Predicted protein
OS=Micromonas sp. (strain RCC299 / NOUM17) GN=MICPUN_56563
,33.9,0.0000000003,Sas10_Utp3,Sas10/Utp3/C1D; SUN-COR STEROID HORMONE
RECEPTOR CO-REPRESSOR,Exosome-associated factor R,CUFF.28001.1
         (213 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G25080.1 | Symbols:  | Sas10/Utp3/C1D family | chr5:8643782-8...   239   7e-64

>AT5G25080.1 | Symbols:  | Sas10/Utp3/C1D family |
           chr5:8643782-8646306 FORWARD LENGTH=217
          Length = 217

 Score =  239 bits (611), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 111/202 (54%), Positives = 157/202 (77%), Gaps = 2/202 (0%)

Query: 9   AVPESVTDSVTTTLSNLQELRTHFHQFLSLTDPETLSQLPPLQRAQSLFLLSKITSTLLA 68
            VPES  ++V  TL+ L+EL+    Q L+L +PE L+ + PLQRA+++ LL++ T+TL  
Sbjct: 15  VVPESAIEAVNQTLAYLKELKPQLEQMLTLAEPEVLAAMQPLQRAKTMHLLAEATTTLYE 74

Query: 69  LNLRCSGINPDDHPVKSELDRVNLYEDKLDRLLDLSKAPLRPSTTLNYQAATRFIEHSLP 128
           L LRC+G++PDDH VKSE++R+N+Y +K  + +D SK PLRP+T LN QAATRFIEHSLP
Sbjct: 75  LRLRCTGVDPDDHRVKSEIERINVYREKFQKCVDQSKGPLRPTTVLNRQAATRFIEHSLP 134

Query: 129 DLTSEQRQNMRNISRGEGPKKNHQERAAKKRKYQSSEKTSVQAAAQEFLEKAAREILGHN 188
           DLTS Q+Q++R++S+GE  +  + E +A+KRKYQS+EK SVQ+AA++FLEKAAREI+GHN
Sbjct: 135 DLTSTQKQSIRDLSKGEKSRIRYSETSARKRKYQSNEKQSVQSAAKDFLEKAAREIIGHN 194

Query: 189 DGGVKGPMQINNSEDGDDDEEL 210
           + G+KGP+    + DG DD E+
Sbjct: 195 ENGLKGPLVA--AADGSDDVEV 214