Miyakogusa Predicted Gene
- Lj1g3v1810110.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v1810110.1 tr|A9RVE0|A9RVE0_PHYPA Predicted protein
(Fragment) OS=Physcomitrella patens subsp. patens
GN=PHYPAD,26.61,0.00000000004,CGI-12 PROTEIN-RELATED,NULL;
Mitochondrial termination factor repeats,Mitochodrial transcription
ter,CUFF.27991.1
(346 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G03050.1 | Symbols: EMB93, SOLDAT10 | Mitochondrial transcrip... 303 1e-82
AT2G34620.1 | Symbols: | Mitochondrial transcription terminatio... 202 3e-52
AT2G36000.1 | Symbols: | Mitochondrial transcription terminatio... 150 1e-36
AT2G36000.2 | Symbols: | Mitochondrial transcription terminatio... 150 2e-36
AT3G18870.1 | Symbols: | Mitochondrial transcription terminatio... 127 1e-29
AT1G78930.1 | Symbols: | Mitochondrial transcription terminatio... 110 2e-24
AT4G14605.1 | Symbols: | Mitochondrial transcription terminatio... 105 6e-23
AT5G55580.1 | Symbols: | Mitochondrial transcription terminatio... 100 2e-21
AT2G21710.1 | Symbols: EMB2219 | Mitochondrial transcription ter... 95 7e-20
AT4G38160.3 | Symbols: pde191 | Mitochondrial transcription term... 87 1e-17
AT4G38160.1 | Symbols: pde191 | Mitochondrial transcription term... 87 1e-17
AT4G38160.2 | Symbols: pde191 | Mitochondrial transcription term... 87 2e-17
AT2G44020.1 | Symbols: | Mitochondrial transcription terminatio... 74 1e-13
AT4G02990.1 | Symbols: | Mitochondrial transcription terminatio... 68 1e-11
AT5G64950.1 | Symbols: | Mitochondrial transcription terminatio... 59 4e-09
AT5G54180.1 | Symbols: PTAC15 | plastid transcriptionally active... 58 1e-08
AT1G62110.1 | Symbols: | Mitochondrial transcription terminatio... 54 2e-07
AT1G61960.1 | Symbols: | Mitochondrial transcription terminatio... 51 1e-06
AT1G61970.2 | Symbols: | Mitochondrial transcription terminatio... 49 4e-06
AT1G61970.1 | Symbols: | Mitochondrial transcription terminatio... 49 4e-06
>AT2G03050.1 | Symbols: EMB93, SOLDAT10 | Mitochondrial
transcription termination factor family protein |
chr2:900094-900945 REVERSE LENGTH=283
Length = 283
Score = 303 bits (775), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 152/253 (60%), Positives = 194/253 (76%), Gaps = 1/253 (0%)
Query: 48 DRGLIFREKSLYLHKLNINPEKAFRQNPTLRTCPLTTLKSVERCLSSMGIPRTAMGRILD 107
D G++FREK +YL LN++P KA R NP+LR+ P++++ SVE LSS G+ R A+GRILD
Sbjct: 27 DTGILFREKLIYLQDLNVDPHKALRVNPSLRSAPISSVVSVETLLSSTGLSRPAVGRILD 86
Query: 108 MLPQLLTRDPHRDLYPILDFLLHEVRIPYPDVQKSILRCPRLLVSSVEERLRPSLCFLRE 167
M P LLT DP ++ P+L FL +E+ I D+ KSI RCPRLL+SSV+ +LRP+L FL+
Sbjct: 87 MFPDLLTSDPESEILPVLRFLSNEISISEQDIPKSISRCPRLLISSVDYQLRPALTFLKT 146
Query: 168 LGFVGPHSLTCQTTLLLVSSVEDTLLPKVEFL-RGLGFTRLEVSNMIVRSPALLTLSVVN 226
LGFVG ++T + T+LLVS+VE TL+PK+E+L GLGFTR EV+ M+VRSPALLT SV N
Sbjct: 147 LGFVGRDTITSRNTVLLVSNVERTLIPKIEYLEEGLGFTREEVAKMVVRSPALLTYSVDN 206
Query: 227 NLAPKVEFFLKEMNGDVAELKRFPQYFSFSLEGRIKPRHALLVRHGVSLSLQQMLQVSDG 286
NL PKVEFF++EM GDV ELKRFPQYFSFSLE +IKPRH LL HG+ + L +ML+VSDG
Sbjct: 207 NLVPKVEFFIEEMRGDVKELKRFPQYFSFSLERKIKPRHRLLKEHGILMPLSEMLKVSDG 266
Query: 287 GLEDRLFEMRLRG 299
L E+RLR
Sbjct: 267 QFNHWLLELRLRS 279
>AT2G34620.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr2:14577196-14578203 FORWARD
LENGTH=303
Length = 303
Score = 202 bits (514), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 117/276 (42%), Positives = 166/276 (60%), Gaps = 3/276 (1%)
Query: 20 PFQNPTFNLRIKPLTSIAQFSQQP-NTLPDRG--LIFREKSLYLHKLNINPEKAFRQNPT 76
P Q+ + L KP T P T+ D+ L +EK L L + I+ KA NP
Sbjct: 19 PQQSQSTFLSTKPTTIKTNLHSHPLFTVADQTVTLQMKEKILCLELMGIDSGKALSLNPC 78
Query: 77 LRTCPLTTLKSVERCLSSMGIPRTAMGRILDMLPQLLTRDPHRDLYPILDFLLHEVRIPY 136
L + PL +++SV L S GI + RIL M P++LT D +LYP+ FL +++ +P
Sbjct: 79 LCSAPLDSIQSVLHFLQSKGIYPNDLPRILGMCPKILTSDVRTELYPVFMFLSNDLHVPE 138
Query: 137 PDVQKSILRCPRLLVSSVEERLRPSLCFLRELGFVGPHSLTCQTTLLLVSSVEDTLLPKV 196
++ I +CPRLL+SSVE++L+P+L +L+ LG +L Q +LLVSSVE TL+PK+
Sbjct: 139 NAFRRVIKKCPRLLISSVEDQLKPALFYLQRLGLKDLEALAYQDPILLVSSVEHTLIPKL 198
Query: 197 EFLRGLGFTRLEVSNMIVRSPALLTLSVVNNLAPKVEFFLKEMNGDVAELKRFPQYFSFS 256
FL +GF+R E MI+R PAL T S+ NN PK+++F+ E+ G + LK FPQYF+FS
Sbjct: 199 RFLESIGFSRPEAIGMILRCPALFTFSIENNFKPKLDYFMSEIKGKLENLKEFPQYFAFS 258
Query: 257 LEGRIKPRHALLVRHGVSLSLQQMLQVSDGGLEDRL 292
LE RIKPRH + G+ L L ML+ +D E L
Sbjct: 259 LEKRIKPRHLESMERGLELPLSLMLKSTDEEFEQLL 294
>AT2G36000.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr2:15117181-15118182 FORWARD
LENGTH=333
Length = 333
Score = 150 bits (379), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 90/241 (37%), Positives = 137/241 (56%), Gaps = 7/241 (2%)
Query: 55 EKSLYLHKLNINPEKAFRQNPTLRTCPLTTLKSVERCLSSMGIPRTAMG--RILDMLPQL 112
EK +YL L I+ ++P L + L+ ++SV +++ I T R++ M P+L
Sbjct: 75 EKLIYLDSLGIDFLTLINRHPPLLSTALSAVESVVDYMTTPPINFTLQDFRRLVSMCPEL 134
Query: 113 LTRDPHRDLYPILDFLLHEVRIPYP-DVQKSILRCPRLLVSSVEERLRPSLCFLRELGFV 171
LT P++ FLL EV + D+++++ R PRLL SV+ +LRP+L FL+ +G +
Sbjct: 135 LTSPLTSHTIPVITFLLREVGVDSIFDLRQALRRRPRLLACSVDHQLRPTLYFLQRIGIL 194
Query: 172 GPHSLTCQTTLLLVSSVEDTLLPKVEFLRGLGFTRLEVSNMIVRSPALLTLSVVNNLAPK 231
PH + T LL SV++ L+P++++ LGF+R + M R P L S+ N PK
Sbjct: 195 DPH----KHTYLLSCSVDNKLVPRIDYFEKLGFSRRSATAMFKRFPQLFNYSIAENYEPK 250
Query: 232 VEFFLKEMNGDVAELKRFPQYFSFSLEGRIKPRHALLVRHGVSLSLQQMLQVSDGGLEDR 291
+++ + EM DV E+ FPQYFSFSLE RIKPRH GV L ML+ ++ G D
Sbjct: 251 LKYLMVEMGRDVREVLEFPQYFSFSLENRIKPRHEACAAKGVRFPLPVMLKTNEAGFRDT 310
Query: 292 L 292
L
Sbjct: 311 L 311
>AT2G36000.2 | Symbols: | Mitochondrial transcription termination
factor family protein | chr2:15117181-15118333 FORWARD
LENGTH=318
Length = 318
Score = 150 bits (378), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 90/241 (37%), Positives = 137/241 (56%), Gaps = 7/241 (2%)
Query: 55 EKSLYLHKLNINPEKAFRQNPTLRTCPLTTLKSVERCLSSMGIPRTAMG--RILDMLPQL 112
EK +YL L I+ ++P L + L+ ++SV +++ I T R++ M P+L
Sbjct: 75 EKLIYLDSLGIDFLTLINRHPPLLSTALSAVESVVDYMTTPPINFTLQDFRRLVSMCPEL 134
Query: 113 LTRDPHRDLYPILDFLLHEVRIPYP-DVQKSILRCPRLLVSSVEERLRPSLCFLRELGFV 171
LT P++ FLL EV + D+++++ R PRLL SV+ +LRP+L FL+ +G +
Sbjct: 135 LTSPLTSHTIPVITFLLREVGVDSIFDLRQALRRRPRLLACSVDHQLRPTLYFLQRIGIL 194
Query: 172 GPHSLTCQTTLLLVSSVEDTLLPKVEFLRGLGFTRLEVSNMIVRSPALLTLSVVNNLAPK 231
PH + T LL SV++ L+P++++ LGF+R + M R P L S+ N PK
Sbjct: 195 DPH----KHTYLLSCSVDNKLVPRIDYFEKLGFSRRSATAMFKRFPQLFNYSIAENYEPK 250
Query: 232 VEFFLKEMNGDVAELKRFPQYFSFSLEGRIKPRHALLVRHGVSLSLQQMLQVSDGGLEDR 291
+++ + EM DV E+ FPQYFSFSLE RIKPRH GV L ML+ ++ G D
Sbjct: 251 LKYLMVEMGRDVREVLEFPQYFSFSLENRIKPRHEACAAKGVRFPLPVMLKTNEAGFRDT 310
Query: 292 L 292
L
Sbjct: 311 L 311
>AT3G18870.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr3:6508515-6509339 REVERSE
LENGTH=274
Length = 274
Score = 127 bits (318), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 88/237 (37%), Positives = 125/237 (52%), Gaps = 13/237 (5%)
Query: 54 REKSLYLHKLNINPEKAFRQNPTLR--TCPLTTLKSVERCLSSMGIPRTAMGRILDMLPQ 111
RE +L L I P QNP L L+ + S L S GI R++ + PQ
Sbjct: 37 RENLRHLSSLGIVP-----QNPRLAPPANDLSVILSAVNLLKSKGISDEDFPRLVFLCPQ 91
Query: 112 LLTRDPHRD---LYPILDFLLHEVRIPYPDVQKSILRCPRLLVSSVEERLRPSLCFLREL 168
L + P D L P+ DFL E+ + + I+ CP +L S VE LRP+L +L+EL
Sbjct: 92 LFS--PTFDISKLDPVFDFLTGELGASAEESRGLIVNCPNILFSDVEYCLRPTLVYLKEL 149
Query: 169 GFVGPHSLTCQTTLLLVSSVEDTLLPKVEFLRGLGFTRLEVSNMIVRSPALLTLSVVNNL 228
G + + +L + VE L K+ FL+ +GF E + + R PA+ SV +NL
Sbjct: 150 GVRNLNRASKTNAHVLNTRVE-KLRAKMRFLKSIGFEHEEAARVCGRIPAIFGYSVEDNL 208
Query: 229 APKVEFFLKEMNGDVAELKRFPQYFSFSLEGRIKPRHALLVRHGVSLSLQQMLQVSD 285
PK EF + +M ++ ELK+FPQYF+FSL RI+PRH L + V +SL +ML D
Sbjct: 209 RPKFEFLVYDMERELEELKKFPQYFAFSLGKRIRPRHWHLKKKNVRVSLSRMLMWGD 265
>AT1G78930.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr1:29678285-29680648 REVERSE
LENGTH=591
Length = 591
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 72/247 (29%), Positives = 122/247 (49%), Gaps = 9/247 (3%)
Query: 63 LNINPEKAFRQNPTLRTCPLTTLKSVERCLSSMGIPRTAMGRILDMLPQLLTRDPHRDLY 122
L ++ + A R+ P L C + ++ + + +G+ MG+++ +PQLL P L
Sbjct: 349 LKMDIDHAIRRWPLLLGCSASNMEMMVKEFDKLGVRDKRMGKVIPKMPQLLLCKPQEFLK 408
Query: 123 PILDFLLHEVRIPYPDVQKSILRCPRLLVSSVEERLRPSLCFLRELGFVGPH--SLTCQT 180
+ L ++ V + + RCP + S+E+ L+ L FL G H + +
Sbjct: 409 VVC--FLEDLGFQKEIVGQILCRCPEIFGCSIEKTLQKKLIFLTRFGVSTTHFPRIIKKY 466
Query: 181 TLLLVSSVEDTLLPKVEFLRGLGFTRLEVSNMIVRSPALLTLSVVNNLAPKVEFFLKEMN 240
L+ + T+LP++++L +G + E++ MI + +L S+ L PK EF + M
Sbjct: 467 PEFLIYDADKTVLPRLKYLMEIGISEREIAFMIRKFSPILGYSIDKVLRPKFEFLVNSME 526
Query: 241 GDVAELKRFPQYFSFSLEGRIKPRHALLVRHGVSLSLQQMLQVSDGGLEDRLFEMRLRGL 300
V E+ +P+YFS+SLE RIKPR +L + +LQ+ML G D F GL
Sbjct: 527 KPVREVIEYPRYFSYSLEKRIKPRFRVLKGRNIECTLQEML-----GKNDEEFAADFLGL 581
Query: 301 VGRQSHS 307
Q+HS
Sbjct: 582 GELQTHS 588
>AT4G14605.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr4:8378815-8380564 FORWARD
LENGTH=493
Length = 493
Score = 105 bits (261), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 72/207 (34%), Positives = 111/207 (53%), Gaps = 8/207 (3%)
Query: 84 TLKSVERCLSSMGIPRTAMGRILDMLPQLLTRDPHRDLYPILDFLLHEVRIPYPDVQKSI 143
LK L ++GI + +I+ P +LT + L ++FL + + + + +
Sbjct: 267 NLKPTMAFLETLGIDKNQWAKIISRFPAILTYSRQK-LTSTVEFL-SQTGLTEEQIGRIL 324
Query: 144 LRCPRLLVSSVEERLRPSLCFLRELGF-VGPHSLTCQTTLLLVSSVEDTLLPKVEFLRGL 202
RCP ++ SVE++LRP++ + R L V C T L S+E L P EF
Sbjct: 325 TRCPNIMSYSVEDKLRPTMEYFRSLNVDVAVLLHRCPQTFGL--SIESNLKPVTEFFLEK 382
Query: 203 GFTRLEVSNMIVRSPALLTLSVVNNLAPKVEFFLKEMNGDVAELKRFPQYFSFSLEGRIK 262
GF E+ MI R AL T S+ N+ PK ++F + M+ +EL +FPQ+F +SL+ RIK
Sbjct: 383 GFGLDEIGIMISRYGALYTFSLKENVMPKWDYF-QTMDYPKSELVKFPQFFGYSLQERIK 441
Query: 263 PRHALLVRHGVSLSLQQMLQVSDGGLE 289
PR+ L+ R GV L L Q+L +S G+E
Sbjct: 442 PRYELVQRSGVRLLLNQVLSLS--GIE 466
>AT5G55580.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr5:22515601-22517408 FORWARD
LENGTH=496
Length = 496
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 64/203 (31%), Positives = 103/203 (50%), Gaps = 7/203 (3%)
Query: 72 RQNPTLRTCPLTTLKSVERCLSSMGIPRTAMGRILDMLPQLLTRDPHRDLYPILDFLLHE 131
RQ L+ LK+ L +GIP + +G+I+ P L + L P + +L+ E
Sbjct: 242 RQPQILQYTVENNLKAHISFLMGLGIPNSKIGQIVAATPSLFSYSVENSLRPTIRYLIEE 301
Query: 132 VRIPYPDVQKSILRCPRLLVSSVEERLRPSLCFL-RELGFVGPHSLTCQTT----LLLVS 186
V I DV K + P++LV ++ FL +ELG P + LL
Sbjct: 302 VGIKETDVGKVVQLSPQILVQRLDITWNTRYMFLSKELG--APRDSVVKMVKKHPQLLHY 359
Query: 187 SVEDTLLPKVEFLRGLGFTRLEVSNMIVRSPALLTLSVVNNLAPKVEFFLKEMNGDVAEL 246
S++D LP++ FLR +G ++ ++ +L+LS+ +NL PK + + E+N +V L
Sbjct: 360 SIDDGFLPRINFLRSIGMCNSDILKVLTSLTQVLSLSLEDNLKPKYMYLVNELNNEVHIL 419
Query: 247 KRFPQYFSFSLEGRIKPRHALLV 269
++P Y S SL+ RI+PRH LV
Sbjct: 420 TKYPMYLSLSLDQRIRPRHRFLV 442
>AT2G21710.1 | Symbols: EMB2219 | Mitochondrial transcription
termination factor family protein | chr2:9270886-9273307
FORWARD LENGTH=641
Length = 641
Score = 94.7 bits (234), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 81/283 (28%), Positives = 135/283 (47%), Gaps = 20/283 (7%)
Query: 52 IFREKSLYLHKLNINPEKAFR---QNPTLRTCPLTT-LKSVERCLSSMGIPRTAMGRILD 107
+ +K YL + ++ E+ R P L C + K + + +GIP+ M RIL
Sbjct: 351 VMEKKINYLKEFGLSTEEVGRLLAYKPHLMGCSIEERWKPLVKYFYYLGIPKEGMKRILV 410
Query: 108 MLPQLLTRDPHRDLYPILDFLLHEVRIPYPDVQKSILRCPRLLVSSVEERLRPSLCFLRE 167
+ P L D + + P + FL E+ IP + +++ P LL +S+ +++RP + FL
Sbjct: 411 VKPILYCIDLEKTIAPKVRFL-QEMGIPNEAIGNMLVKFPSLLTNSLYKKIRPVVIFLLT 469
Query: 168 LGFVGPHSLTCQTTL---LLVSSVEDTLLPKVEFLRGLGFTRLEVSNMIVRSPALLTLSV 224
V + + LL S+ L P + + LG ++ MI P LL +V
Sbjct: 470 RAGVTQKDIGKVIAMDPALLGCSIGTKLEPNMRYYISLGIRFYQLGEMIADFPMLLRYNV 529
Query: 225 VNNLAPKVEFFLKEMNGDVAELKRFPQYFSFSLEGRIKPRHALLVRHGVSLSLQQMLQVS 284
+NL PK + + M + +L FP++FS+SLE RI PRH ++V + V+ L+ ML +
Sbjct: 530 -DNLRPKYRYLRRTMIRPLQDLIEFPRFFSYSLERRIIPRHTIMVENRVNFKLRYMLACT 588
Query: 285 DGGLEDRLFEMRLRGLVGRQS------HSPPTVPASLSLSPPE 321
D FE R+R V R+ S + P+ ++S E
Sbjct: 589 -----DEEFERRVRDKVERRERFEAGLDSEDSQPSDENISDQE 626
>AT4G38160.3 | Symbols: pde191 | Mitochondrial transcription
termination factor family protein |
chr4:17902412-17903904 FORWARD LENGTH=378
Length = 378
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 108/218 (49%), Gaps = 9/218 (4%)
Query: 78 RTCPLTTLKSVERCLSSMGIPRTAMGRILDMLPQLLTRDPHRDLYPILDFLLHEVRIPYP 137
+ CPL ++G+P T +G+++ P+L++ L I+ FL
Sbjct: 113 KLCPLLAF------FQALGVPETQLGKMILFNPRLISYSIDTKLTVIVSFLASLGLDQDG 166
Query: 138 DVQKSILRCPRLLVSSVEERLRPSLCFLRE---LGFVGPHSLTCQTTLLLVSSVEDTLLP 194
+ K +++ P L+ SV++RLRP+ FL+ L G S+ LL V L P
Sbjct: 167 MIGKVLVKNPFLMGYSVDKRLRPTTEFLKSSVGLSEDGIKSVVMNFPQLLCRDVNKILKP 226
Query: 195 KVEFLRGLGFTRLEVSNMIVRSPALLTLSVVNNLAPKVEFFLKEMNGDVAELKRFPQYFS 254
++L+ GF +++ M+ P +L SV N+L P++ F ++ M + E+ +P++F
Sbjct: 227 NYDYLKECGFGDSQIATMVTGYPQILIKSVKNSLQPRIRFLVQVMGRGMDEVASYPEFFH 286
Query: 255 FSLEGRIKPRHALLVRHGVSLSLQQMLQVSDGGLEDRL 292
L+ +++ R L+ ++ + SL++ML + ++
Sbjct: 287 HGLKKKVESRFKLVKKNNIDCSLREMLDCNTKKFHEKF 324
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 86/191 (45%), Gaps = 12/191 (6%)
Query: 95 MGIPRTAMGRILDMLPQLLTRDPHRDLYPILDFLLHEVRIPYPDVQKSILRCPRLLVSSV 154
+GI + I+ P++LT L P+++ L R P +V +I + P +L SV
Sbjct: 52 VGIQERKLPYIVSRCPKILTLRLDERLIPMVECLSSLGRNP-REVASAITKFPPILSHSV 110
Query: 155 EERLRPSLCFLRELGFVGPHSLTCQTTL----LLVSSVEDTLLPKVEFLRGLGFTRLE-V 209
EE+L P L F + LG P + + L L+ S++ L V FL LG + +
Sbjct: 111 EEKLCPLLAFFQALGV--PETQLGKMILFNPRLISYSIDTKLTVIVSFLASLGLDQDGMI 168
Query: 210 SNMIVRSPALLTLSVVNNLAPKVEFFLKEM----NGDVAELKRFPQYFSFSLEGRIKPRH 265
++V++P L+ SV L P EF + +G + + FPQ + +KP +
Sbjct: 169 GKVLVKNPFLMGYSVDKRLRPTTEFLKSSVGLSEDGIKSVVMNFPQLLCRDVNKILKPNY 228
Query: 266 ALLVRHGVSLS 276
L G S
Sbjct: 229 DYLKECGFGDS 239
>AT4G38160.1 | Symbols: pde191 | Mitochondrial transcription
termination factor family protein |
chr4:17902412-17903413 FORWARD LENGTH=333
Length = 333
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 108/218 (49%), Gaps = 9/218 (4%)
Query: 78 RTCPLTTLKSVERCLSSMGIPRTAMGRILDMLPQLLTRDPHRDLYPILDFLLHEVRIPYP 137
+ CPL ++G+P T +G+++ P+L++ L I+ FL
Sbjct: 113 KLCPLLAF------FQALGVPETQLGKMILFNPRLISYSIDTKLTVIVSFLASLGLDQDG 166
Query: 138 DVQKSILRCPRLLVSSVEERLRPSLCFLRE---LGFVGPHSLTCQTTLLLVSSVEDTLLP 194
+ K +++ P L+ SV++RLRP+ FL+ L G S+ LL V L P
Sbjct: 167 MIGKVLVKNPFLMGYSVDKRLRPTTEFLKSSVGLSEDGIKSVVMNFPQLLCRDVNKILKP 226
Query: 195 KVEFLRGLGFTRLEVSNMIVRSPALLTLSVVNNLAPKVEFFLKEMNGDVAELKRFPQYFS 254
++L+ GF +++ M+ P +L SV N+L P++ F ++ M + E+ +P++F
Sbjct: 227 NYDYLKECGFGDSQIATMVTGYPQILIKSVKNSLQPRIRFLVQVMGRGMDEVASYPEFFH 286
Query: 255 FSLEGRIKPRHALLVRHGVSLSLQQMLQVSDGGLEDRL 292
L+ +++ R L+ ++ + SL++ML + ++
Sbjct: 287 HGLKKKVESRFKLVKKNNIDCSLREMLDCNTKKFHEKF 324
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 86/191 (45%), Gaps = 12/191 (6%)
Query: 95 MGIPRTAMGRILDMLPQLLTRDPHRDLYPILDFLLHEVRIPYPDVQKSILRCPRLLVSSV 154
+GI + I+ P++LT L P+++ L R P +V +I + P +L SV
Sbjct: 52 VGIQERKLPYIVSRCPKILTLRLDERLIPMVECLSSLGRNP-REVASAITKFPPILSHSV 110
Query: 155 EERLRPSLCFLRELGFVGPHSLTCQTTL----LLVSSVEDTLLPKVEFLRGLGFTRLE-V 209
EE+L P L F + LG P + + L L+ S++ L V FL LG + +
Sbjct: 111 EEKLCPLLAFFQALGV--PETQLGKMILFNPRLISYSIDTKLTVIVSFLASLGLDQDGMI 168
Query: 210 SNMIVRSPALLTLSVVNNLAPKVEFFLKEM----NGDVAELKRFPQYFSFSLEGRIKPRH 265
++V++P L+ SV L P EF + +G + + FPQ + +KP +
Sbjct: 169 GKVLVKNPFLMGYSVDKRLRPTTEFLKSSVGLSEDGIKSVVMNFPQLLCRDVNKILKPNY 228
Query: 266 ALLVRHGVSLS 276
L G S
Sbjct: 229 DYLKECGFGDS 239
>AT4G38160.2 | Symbols: pde191 | Mitochondrial transcription
termination factor family protein |
chr4:17902412-17903784 FORWARD LENGTH=363
Length = 363
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 108/218 (49%), Gaps = 9/218 (4%)
Query: 78 RTCPLTTLKSVERCLSSMGIPRTAMGRILDMLPQLLTRDPHRDLYPILDFLLHEVRIPYP 137
+ CPL ++G+P T +G+++ P+L++ L I+ FL
Sbjct: 113 KLCPLLAF------FQALGVPETQLGKMILFNPRLISYSIDTKLTVIVSFLASLGLDQDG 166
Query: 138 DVQKSILRCPRLLVSSVEERLRPSLCFLRE---LGFVGPHSLTCQTTLLLVSSVEDTLLP 194
+ K +++ P L+ SV++RLRP+ FL+ L G S+ LL V L P
Sbjct: 167 MIGKVLVKNPFLMGYSVDKRLRPTTEFLKSSVGLSEDGIKSVVMNFPQLLCRDVNKILKP 226
Query: 195 KVEFLRGLGFTRLEVSNMIVRSPALLTLSVVNNLAPKVEFFLKEMNGDVAELKRFPQYFS 254
++L+ GF +++ M+ P +L SV N+L P++ F ++ M + E+ +P++F
Sbjct: 227 NYDYLKECGFGDSQIATMVTGYPQILIKSVKNSLQPRIRFLVQVMGRGMDEVASYPEFFH 286
Query: 255 FSLEGRIKPRHALLVRHGVSLSLQQMLQVSDGGLEDRL 292
L+ +++ R L+ ++ + SL++ML + ++
Sbjct: 287 HGLKKKVESRFKLVKKNNIDCSLREMLDCNTKKFHEKF 324
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 86/191 (45%), Gaps = 12/191 (6%)
Query: 95 MGIPRTAMGRILDMLPQLLTRDPHRDLYPILDFLLHEVRIPYPDVQKSILRCPRLLVSSV 154
+GI + I+ P++LT L P+++ L R P +V +I + P +L SV
Sbjct: 52 VGIQERKLPYIVSRCPKILTLRLDERLIPMVECLSSLGRNP-REVASAITKFPPILSHSV 110
Query: 155 EERLRPSLCFLRELGFVGPHSLTCQTTL----LLVSSVEDTLLPKVEFLRGLGFTRLE-V 209
EE+L P L F + LG P + + L L+ S++ L V FL LG + +
Sbjct: 111 EEKLCPLLAFFQALGV--PETQLGKMILFNPRLISYSIDTKLTVIVSFLASLGLDQDGMI 168
Query: 210 SNMIVRSPALLTLSVVNNLAPKVEFFLKEM----NGDVAELKRFPQYFSFSLEGRIKPRH 265
++V++P L+ SV L P EF + +G + + FPQ + +KP +
Sbjct: 169 GKVLVKNPFLMGYSVDKRLRPTTEFLKSSVGLSEDGIKSVVMNFPQLLCRDVNKILKPNY 228
Query: 266 ALLVRHGVSLS 276
L G S
Sbjct: 229 DYLKECGFGDS 239
>AT2G44020.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr2:18217737-18219260 REVERSE
LENGTH=507
Length = 507
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 104/217 (47%), Gaps = 14/217 (6%)
Query: 83 TTLKSVERCLSSMGIPRTAMGRILDMLPQLLTRDPHRDLYPILDFLLHEVRIPYPDVQKS 142
T +K + L S+G+P+ + R+L+ ++ + + P +D L+ V+K
Sbjct: 250 TMIKPLVDYLISIGLPKKIVARMLEKRSYIVGYNLEETVKPNVDCLISF------GVKKE 303
Query: 143 IL-----RCPRLLVSSVEERLRPSLCFLRELGFVGPHSLT--CQTTLLLVSSVEDTLLPK 195
+L + P++L V+ ++ F + P + +VS ++ ++
Sbjct: 304 LLPLLIAQYPQILGLPVKAKMSTQQYFFSLKLKIDPEGFARVVEKMPQIVSLKQNVIMKP 363
Query: 196 VEFLRGLGFTRLEVSNMIVRSPALLTLSVVNNLAPKVEFFLKEMNGDVAELKRFPQYFSF 255
+EFL G F +++ M+VR P +L S V + F+ EM + EL +P+YF++
Sbjct: 364 IEFLLGRAFQVEDIAKMVVRCPQILC-SRVELMKNSYYFYKTEMGRPMKELVEYPEYFTY 422
Query: 256 SLEGRIKPRHALLVRHGVSLSLQQMLQVSDGGLEDRL 292
SLE RIKPR+ L G+ SL L SD E+RL
Sbjct: 423 SLESRIKPRYQKLQSKGIRSSLNWFLNCSDQRFEERL 459
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 52/97 (53%), Gaps = 5/97 (5%)
Query: 182 LLLVSSVEDTLLPKVEFLRGLGFTRLEVSNMIVRSPALLTLSVVNNLAPKVEFFLKEMNG 241
L+L SV L+P + +L +G +R ++ + P +L SVV LAP V+ FL+ ++
Sbjct: 134 LMLGCSVRKNLIPVLAYLEKIGISRSKLGEFVKNYPQVLHASVVVELAPVVK-FLRGLDV 192
Query: 242 DVAELK----RFPQYFSFSLEGRIKPRHALLVRHGVS 274
+ +L ++P+ F LEG + A LV GVS
Sbjct: 193 EKQDLGYVLMKYPELLGFKLEGTMSTSVAYLVSIGVS 229
>AT4G02990.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr4:1322158-1323783 FORWARD
LENGTH=541
Length = 541
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 100/212 (47%), Gaps = 22/212 (10%)
Query: 92 LSSMGIPRTAMGRILDMLPQLLTRDPHRDLYP----ILDFLLHEVRIP-----YPDVQKS 142
L +GIPR A R+++ P +L + + P + DF + E +P YP++
Sbjct: 294 LEVLGIPRLAAARLIEKRPHILGFELDDTVKPNVQILQDFNVRETSLPSIIAQYPEIIGI 353
Query: 143 ILRCPRLLVSSVEERLRPSLCFLRELGFVGPHSLTCQTTLL--LVSSVEDTLLPKVEFLR 200
L+ P+L + R LC L P L + VS E +L ++FL
Sbjct: 354 DLK-PKL------DTQRKLLCSAIHLN---PEDLGSLIERMPQFVSLSESPMLKHIDFLT 403
Query: 201 GLGFTRLEVSNMIVRSPALLTLSVVNNLAPKVEFFLKEMNGDVAELKRFPQYFSFSLEGR 260
GF+ + M++ P +L L++ + E+F KEM + +L FP +F++ LE
Sbjct: 404 KCGFSIDQTREMVIGCPQVLALNL-GIMKLSFEYFQKEMKRPLQDLVDFPAFFTYGLEST 462
Query: 261 IKPRHALLVRHGVSLSLQQMLQVSDGGLEDRL 292
+KPRH +++ G+ SL ML SD E R+
Sbjct: 463 VKPRHKKIIKKGIKCSLAWMLNCSDEKFEQRM 494
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/230 (23%), Positives = 100/230 (43%), Gaps = 10/230 (4%)
Query: 46 LPDRGLIFREKSLYLHKLNINPEKAFRQNPTLRTCPLT-TLKSVERCLSSMGIPRTAMGR 104
LP + +E+ +LHKL + E P + C + + V L +G+ ++
Sbjct: 140 LPVTADVMKERVEFLHKLGLTIED-INNYPLVLGCSVKKNMVPVLDYLGKLGVRKSTFTE 198
Query: 105 ILDMLPQLLTRDPHRDLYPILDFLLHEVRIPYPDVQKSILRCPRLLVSSVEERLRPSLCF 164
L PQ+L DL P++ +L + I DV + + R P +L +E + S+ +
Sbjct: 199 FLRRYPQVLHSSVVIDLAPVVKYL-QGLDIKPSDVPRVLERYPEVLGFKLEGTMSTSVAY 257
Query: 165 LRELGFVGPH--SLTCQTTLLLVSSVEDTLLPKVEFLRGLGFTRLEVSNMIVRSPALLTL 222
L +G + + +L V + P VE+L LG RL + +I + P +L
Sbjct: 258 LVGIGVARREIGGILTRYPEILGMRVARIIKPLVEYLEVLGIPRLAAARLIEKRPHILGF 317
Query: 223 SVVNNLAPKVEFFLKEMNGDVAEL----KRFPQYFSFSLEGRIKPRHALL 268
+ + + P V+ L++ N L ++P+ L+ ++ + LL
Sbjct: 318 ELDDTVKPNVQ-ILQDFNVRETSLPSIIAQYPEIIGIDLKPKLDTQRKLL 366
>AT5G64950.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr5:25953887-25955062 FORWARD
LENGTH=391
Length = 391
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 77/157 (49%), Gaps = 3/157 (1%)
Query: 112 LLTRDPHRDLYPILDFLLHEVRIPYPDVQKSILRCPRLLVSSVEERLRPSLCFLRELGFV 171
LL+RDP+ L P + +L I + + R PR+ S EE+LR + +LGF
Sbjct: 172 LLSRDPNLFLLPNISYL-ETCGIVGSQLASLLRRQPRIFNLS-EEKLRGYVSRALDLGFT 229
Query: 172 GPHSLTCQTTLLLVSSVEDTLLPKVEFLRGLGFTRLEVSNMIVRSPALLTLSVVNNLAPK 231
+ + L S E T KV+ GF+ E++++I RSP L+ S + L
Sbjct: 230 LNSRMLVHAVISLSSLSEKTFDRKVKLFMANGFSEDEITDIIRRSPGLIRCS-EDKLTLG 288
Query: 232 VEFFLKEMNGDVAELKRFPQYFSFSLEGRIKPRHALL 268
EF+LK M + L + P S++LE R+ PR +L
Sbjct: 289 FEFYLKRMGLEREALAKRPCVLSYNLEKRVIPRLKVL 325
>AT5G54180.1 | Symbols: PTAC15 | plastid transcriptionally active 15
| chr5:21988544-21990183 FORWARD LENGTH=500
Length = 500
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/229 (24%), Positives = 99/229 (43%), Gaps = 11/229 (4%)
Query: 64 NINPEKAFRQNPTLRTCPLTTLKSVERC-------LSSMGIPRTAMGRILDMLPQLLTRD 116
N++ E F LR P SVE S G+ + +I+ + P +++
Sbjct: 259 NLSGEDDFATGTVLRRLPAILSYSVEHMNGQVEFLKSFAGLTSEQVFKIVHVFPNVISTS 318
Query: 117 PHRDLYPILDFLLHEVRIPYPDVQKSILRCPRLLVSSVEERLRPSLCFLRELGFVGPHSL 176
R L P ++FL E P + K + + P +L S E L L FL ++G+
Sbjct: 319 KERKLRPRIEFL-KECGFDSPGMFKFLSKAPLILALS-ENNLSHKLGFLVKIGYKHRTKE 376
Query: 177 TCQTTLLLVSSVEDTLLPKVEFLRGLGFTRLEVSNMIVRSPALLTLSVVNNLAPKVEFFL 236
+ + D + + G + ++ M + P +L + +L K+E+ +
Sbjct: 377 LAFAMGAVTRTSSDNMQRVIGLYLSYGLSFEDILAMSTKHPQVLQYNY-TSLEEKLEYLI 435
Query: 237 KEMNGDVAELKRFPQYFSFSLEGRIKPRH-ALLVRHGVSLSLQQMLQVS 284
+ M +V EL FP + + L+ RIK R+ L G ++SL ++L VS
Sbjct: 436 EYMGREVEELLAFPAFLGYKLDSRIKHRYEEKLKSRGENMSLNKLLTVS 484
>AT1G62110.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr1:22958094-22959482 REVERSE
LENGTH=462
Length = 462
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 63/128 (49%), Gaps = 3/128 (2%)
Query: 138 DVQKSILRCPRLLVSSVEERLRPSLCFLRELGFVGPHSLTCQTTL-LLVSSVEDTLLPKV 196
DV +CP L SS E+++ ++ L++ G + ++ + + E +L +
Sbjct: 275 DVWAMFKKCPYFLNSS-EKKIGQTIETLKKCGLLEDEVISVLKKYPQCIGTSEQKILNSI 333
Query: 197 EFLRGLGFTRLEVSNMIVRSPALLTLSVVNNLAPKVEFFLKEMNGDVAELKRFPQYFSFS 256
E GLGF+R E M+ R P L LS + K+EF +K+MN + ++ P ++
Sbjct: 334 EIFLGLGFSRDEFITMVKRFPQCLILS-AETVKKKIEFVVKKMNWPLKDVVSNPTVLGYN 392
Query: 257 LEGRIKPR 264
LE R PR
Sbjct: 393 LEKRTVPR 400
>AT1G61960.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr1:22902239-22903612 FORWARD
LENGTH=457
Length = 457
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 185 VSSVEDTLLPKVEFLRGLGFTRLEVSNMIVRSPALLTLSVVNNLAPKVEFFLKEMNGDVA 244
+ S E ++ +E GLGF+R E + M+ R P + + + K EF +K MN +
Sbjct: 321 ICSSEQKIVNSIETFLGLGFSRDEFAMMVKRYPQCIDYTA-ETVKKKTEFIVKNMNWPLE 379
Query: 245 ELKRFPQYFSFSLEGRIKPR 264
L PQ F +SLE R PR
Sbjct: 380 ALVSIPQVFGYSLEKRTVPR 399
>AT1G61970.2 | Symbols: | Mitochondrial transcription termination
factor family protein | chr1:22904713-22905969 FORWARD
LENGTH=418
Length = 418
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 56/115 (48%), Gaps = 2/115 (1%)
Query: 155 EERLRPSLCFLRELGF-VGPHSLTCQTTLLLVSSVEDTLLPKVEFLRGLGFTRLEVSNMI 213
E+ + + + LGF VG + + + + E +L +E GLGF+R E + M+
Sbjct: 254 EKTIEEKVHLYKSLGFDVGDVWSSFKKWPISLRVSEKKMLDSIETFLGLGFSRDEFAKMV 313
Query: 214 VRSPALLTLSVVNNLAPKVEFFLKEMNGDVAELKRFPQYFSFSLEGRIKPRHALL 268
P + LS + K EF +K+MN + + P F +SLE RI PR ++
Sbjct: 314 KHFPPCIGLST-ETVKKKTEFLVKKMNWPLKAVVSNPAVFGYSLEKRIVPRGNVI 367
>AT1G61970.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr1:22904713-22905969 FORWARD
LENGTH=418
Length = 418
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 56/115 (48%), Gaps = 2/115 (1%)
Query: 155 EERLRPSLCFLRELGF-VGPHSLTCQTTLLLVSSVEDTLLPKVEFLRGLGFTRLEVSNMI 213
E+ + + + LGF VG + + + + E +L +E GLGF+R E + M+
Sbjct: 254 EKTIEEKVHLYKSLGFDVGDVWSSFKKWPISLRVSEKKMLDSIETFLGLGFSRDEFAKMV 313
Query: 214 VRSPALLTLSVVNNLAPKVEFFLKEMNGDVAELKRFPQYFSFSLEGRIKPRHALL 268
P + LS + K EF +K+MN + + P F +SLE RI PR ++
Sbjct: 314 KHFPPCIGLST-ETVKKKTEFLVKKMNWPLKAVVSNPAVFGYSLEKRIVPRGNVI 367